mRNA_H-fluviatilis_contig103058.637.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103058.637.1
Unique NamemRNA_H-fluviatilis_contig103058.637.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.370e-21
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            RYLCPQ+PP G+NTV KCAH+V LL FLEDWQMFEGV DMWCTSQQFL
Sbjct: 1494 RYLCPQEPPGGINTVCKCAHYVSLLTFLEDWQMFEGVGDMWCTSQQFL 1541
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.860e-14
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMF------EGVTDMWCTSQQFL 144
            R+L PQ+PP GL+T  K AHFVRL+PFLEDWQ        E   DMWCTSQQFL
Sbjct: 1408 RFLVPQEPPEGLDTPQKLAHFVRLVPFLEDWQAVPVRAAAEAANDMWCTSQQFL 1461
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A7S3XNL5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNL5_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 1.840e-12
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            RYL PQ PP  +  V   AH+V LLPFLED Q F+G  D+WCTSQQFL
Sbjct:   29 RYLTPQAPPDDVRDVAGAAHYVALLPFLEDRQAFDGDLDLWCTSQQFL 76
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: F0YL45_AURAN (CC2D2AN-C2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL45_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVT-DMWCTSQQFL 144
            RYL PQ PPPG++++ + A FV L+PFL+DWQ F     D+WCTSQ+FL
Sbjct: 1314 RYLLPQNPPPGIDSLLRAARFVSLIPFLDDWQTFGCANLDVWCTSQEFL 1362
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A7S4QYU0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.420e-11
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCT 129
            R+L  Q PPPG +++ KCAHFV L+PFLE+WQ F+   DMWCT
Sbjct:  429 RFLKSQAPPPGFDSIYKCAHFVSLIPFLENWQAFKCKLDMWCT 471
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A2D4CD37_PYTIN (CC2D2AN-C2 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD37_PYTIN)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 PQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            P  PPPGL+T+ +   +V L+PFL+DW +F+G  D+WCT  +FL
Sbjct:  931 PLAPPPGLSTLAQLVRYVSLVPFLQDWHLFDGELDVWCTPHEFL 974
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A7S1NY71_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NY71_9ALVE)

HSP 1 Score: 52.4 bits (124), Expect = 2.840e-7
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNT------VPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            RY+ P  PPP + +      + K A +V L+PFLED+Q+F G TD+W + Q+F+
Sbjct:   69 RYVHPLSPPPDVTSLDDPLAIEKAAAYVALIPFLEDYQVFLGSTDLWLSPQEFI 122
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: K3XAE6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAE6_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 4.070e-7
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 RYLCPQQPP-------PGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            +YL  QQPP       P L TV K   FV L+PFL DW +F+G  D+W TSQ+FL
Sbjct:  236 QYLRAQQPPRSGIFSKPPL-TVQKLVRFVSLIPFLNDWHLFDGDKDIWSTSQEFL 289
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A5D6Y285_9STRA (C2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y285_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.080e-7
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 RYLCPQQPP------PGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            +++  QQPP          T+ K   FV+LLPFL+DW +F+G  D+W TSQ+FL
Sbjct:  476 QFIGVQQPPRSGPFSQSRTTLQKLVRFVKLLPFLDDWHLFDGEKDVWSTSQEFL 529
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BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Match: A0A0G4GCE8_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GCE8_VITBC)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 RYLCPQQPPPGLNT------VPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL 144
            RY+ P  PPP + +      + K A +V L+PFLED+Q+F G TD+W + Q+F+
Sbjct: 1496 RYVHPLSPPPDVTSLDDPLAIEKAAAYVALIPFLEDYQVFLGSTDLWLSPQEFI 1549
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103058.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FPN2_ECTSI2.370e-2183.33CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CHA3_9STRA4.860e-1462.96C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3XNL5_HETAK1.840e-1262.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YL45_AURAN1.340e-1157.14CC2D2AN-C2 domain-containing protein n=1 Tax=Aureo... [more]
A0A7S4QYU0_9STRA3.420e-1160.47Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A2D4CD37_PYTIN2.000e-950.00CC2D2AN-C2 domain-containing protein (Fragment) n=... [more]
A0A7S1NY71_9ALVE2.840e-742.59Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
K3XAE6_GLOUD4.070e-750.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y285_9STRA4.080e-744.44C2 domain-containing protein n=1 Tax=Pythium brass... [more]
A0A0G4GCE8_VITBC1.430e-642.59Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103058contigH-fluviatilis_contig103058:459..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.0231354-CDS-H-fluviatilis_contig103058:458..6021622929074.0231354-CDS-H-fluviatilis_contig103058:458..602Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103058 459..602 -
1691135172.7968423-CDS-H-fluviatilis_contig103058:458..6021691135172.7968423-CDS-H-fluviatilis_contig103058:458..602Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103058 459..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103058.637.1prot_H-fluviatilis_contig103058.637.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103058 459..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103058.637.1

>prot_H-fluviatilis_contig103058.637.1 ID=prot_H-fluviatilis_contig103058.637.1|Name=mRNA_H-fluviatilis_contig103058.637.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=48bp
RYLCPQQPPPGLNTVPKCAHFVRLLPFLEDWQMFEGVTDMWCTSQQFL
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mRNA from alignment at H-fluviatilis_contig103058:459..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103058.637.1 ID=mRNA_H-fluviatilis_contig103058.637.1|Name=mRNA_H-fluviatilis_contig103058.637.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=144bp|location=Sequence derived from alignment at H-fluviatilis_contig103058:459..602- (Heribaudiella fluviatilis SAG_13_90)
AGGTACTTGTGCCCACAACAGCCTCCTCCGGGGCTGAACACGGTGCCGAA
GTGCGCTCATTTCGTTCGGCTTTTGCCGTTTCTGGAAGACTGGCAGATGT
TCGAAGGCGTGACCGACATGTGGTGTACCAGCCAACAGTTCTTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig103058:459..602-

>mRNA_H-fluviatilis_contig103058.637.1 ID=mRNA_H-fluviatilis_contig103058.637.1|Name=mRNA_H-fluviatilis_contig103058.637.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=288bp|location=Sequence derived from alignment at H-fluviatilis_contig103058:459..602- (Heribaudiella fluviatilis SAG_13_90)
AGGTACTTGTGCCCACAACAGCCTCCTCCGGGGCTGAACACGGTGCCGAA
GTGCGCTCATTTCGTTCGGCTTTTGCCGTTTCTGGAAGACTGGCAGATGT
TCGAAGGCGTGACCGACATGTGGTGTACCAGCCAACAGTTCTTGAGGTAC
TTGTGCCCACAACAGCCTCCTCCGGGGCTGAACACGGTGCCGAAGTGCGC
TCATTTCGTTCGGCTTTTGCCGTTTCTGGAAGACTGGCAGATGTTCGAAG
GCGTGACCGACATGTGGTGTACCAGCCAACAGTTCTTG
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