mRNA_H-fluviatilis_contig103050.636.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig103050.636.1
Unique NamemRNA_H-fluviatilis_contig103050.636.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103050.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig103050contigH-fluviatilis_contig103050:420..747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig103050.636.1prot_H-fluviatilis_contig103050.636.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig103050 420..660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.930387-CDS-H-fluviatilis_contig103050:419..4671622929073.930387-CDS-H-fluviatilis_contig103050:419..467Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103050 420..467 -
1691135172.7624075-CDS-H-fluviatilis_contig103050:419..4671691135172.7624075-CDS-H-fluviatilis_contig103050:419..467Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103050 420..467 -
1622929073.9427881-CDS-H-fluviatilis_contig103050:489..6601622929073.9427881-CDS-H-fluviatilis_contig103050:489..660Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103050 490..660 -
1691135172.7706728-CDS-H-fluviatilis_contig103050:489..6601691135172.7706728-CDS-H-fluviatilis_contig103050:489..660Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig103050 490..660 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.9564486-UTR-H-fluviatilis_contig103050:660..7471622929073.9564486-UTR-H-fluviatilis_contig103050:660..747Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103050 661..747 -
1691135172.7786326-UTR-H-fluviatilis_contig103050:660..7471691135172.7786326-UTR-H-fluviatilis_contig103050:660..747Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig103050 661..747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig103050.636.1

>prot_H-fluviatilis_contig103050.636.1 ID=prot_H-fluviatilis_contig103050.636.1|Name=mRNA_H-fluviatilis_contig103050.636.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=73bp
MHMRGDGPTQPSTEIAEGPIKQQPPIRGCRLCMASPHVGRANGRKLEGTA
TTTPVRRSDISNESSDNPWAESE
back to top

mRNA from alignment at H-fluviatilis_contig103050:420..747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig103050.636.1 ID=mRNA_H-fluviatilis_contig103050.636.1|Name=mRNA_H-fluviatilis_contig103050.636.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=328bp|location=Sequence derived from alignment at H-fluviatilis_contig103050:420..747- (Heribaudiella fluviatilis SAG_13_90)
CATCGAGAACCGGGGACGATGACTTCGAGTGGACTGACGCCGGAGTCAAT
GAAGTCGAGGCAACCGTCTGGGCACCGCCCATGAGGAATGCACATGCGCG
GGGATGGGCCTACACAGCCCTCGACCGAGATCGCCGAAGGCCCCATCAAG
CAGCAACCTCCGATCCGCGGGTGCCGATTGTGCATGGCGAGTCCCCACGT
CGGGAGGGCGAACGGGAGGAAACTGGAGGGAACAGCAACAACGACTCCAG
TGAGAAGAGCGACAACGACCCAGTGAGAAGAGCGACATCTCCAATGAGTC
ATCGGACAACCCCTGGGCGGAGAGTGAG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig103050:420..747-

>mRNA_H-fluviatilis_contig103050.636.1 ID=mRNA_H-fluviatilis_contig103050.636.1|Name=mRNA_H-fluviatilis_contig103050.636.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=438bp|location=Sequence derived from alignment at H-fluviatilis_contig103050:420..747- (Heribaudiella fluviatilis SAG_13_90)
ATGCACATGCGCGGGGATGGGCCTACACAGCCCTCGACCGAGATCGCCGA
AGGCCCCATCAAGCAGCAACCTCCGATCCGCGGGTGCCGATTGTGCATGG
CGAGTCCCCACGTCGGGAGGGCGAACGGGAGGAAACTGGAGGGAACAGCA
ACAACGACTCCAGTGAGAAGAATGCACATGCGCGGGGATGGGCCTACACA
GCCCTCGACCGAGATCGCCGAAGGCCCCATCAAGCAGCAACCTCCGATCC
GCGGGTGCCGATTGTGCATGGCGAGTCCCCACGTCGGGAGGGCGAACGGG
AGGAAACTGGAGGGAACAGCAACAACGACTCCAGTGAGAAGAAGCGACAT
CTCCAATGAGTCATCGGACAACCCCTGGGCGGAGAGTGAGAGCGACATCT
CCAATGAGTCATCGGACAACCCCTGGGCGGAGAGTGAG
back to top