mRNA_H-fluviatilis_contig1030.626.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1030.626.1
Unique NamemRNA_H-fluviatilis_contig1030.626.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1030.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1030contigH-fluviatilis_contig1030:8715..10613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size464
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1030.626.1prot_H-fluviatilis_contig1030.626.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1030 8720..10499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.0035353-UTR-H-fluviatilis_contig1030:8714..87191622929073.0035353-UTR-H-fluviatilis_contig1030:8714..8719Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 8715..8719 -
1691135172.3795516-UTR-H-fluviatilis_contig1030:8714..87191691135172.3795516-UTR-H-fluviatilis_contig1030:8714..8719Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 8715..8719 -
1622929073.063876-UTR-H-fluviatilis_contig1030:10499..106131622929073.063876-UTR-H-fluviatilis_contig1030:10499..10613Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 10500..10613 -
1691135172.4037476-UTR-H-fluviatilis_contig1030:10499..106131691135172.4037476-UTR-H-fluviatilis_contig1030:10499..10613Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 10500..10613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.0200942-CDS-H-fluviatilis_contig1030:8719..87771622929073.0200942-CDS-H-fluviatilis_contig1030:8719..8777Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 8720..8777 -
1691135172.387468-CDS-H-fluviatilis_contig1030:8719..87771691135172.387468-CDS-H-fluviatilis_contig1030:8719..8777Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 8720..8777 -
1622929073.0433526-CDS-H-fluviatilis_contig1030:10212..104991622929073.0433526-CDS-H-fluviatilis_contig1030:10212..10499Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 10213..10499 -
1691135172.3957253-CDS-H-fluviatilis_contig1030:10212..104991691135172.3957253-CDS-H-fluviatilis_contig1030:10212..10499Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 10213..10499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1030.626.1

>prot_H-fluviatilis_contig1030.626.1 ID=prot_H-fluviatilis_contig1030.626.1|Name=mRNA_H-fluviatilis_contig1030.626.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=115bp
MLSVLFYRQPLHLVGAFRTSQAVKWTEGQVLPTPTSPALCSNKQFPVLAS
ASLKHAKHQQQHQRLQEPPHSRANTWKASCDDSLLPIGVRRVLLPPWIAL
PRSWFVAWYCRCAE*
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mRNA from alignment at H-fluviatilis_contig1030:8715..10613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1030.626.1 ID=mRNA_H-fluviatilis_contig1030.626.1|Name=mRNA_H-fluviatilis_contig1030.626.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1899bp|location=Sequence derived from alignment at H-fluviatilis_contig1030:8715..10613- (Heribaudiella fluviatilis SAG_13_90)
GTGCGTTACCCCAACATACCATACAACACCTTCTCCACCGTATCTTTACT
TTTCTGCCAAAAAAACTGCGATCTGGTTCCATTCCGTAGCTTACAGCAAG
CCATACGGTGTGCCATGTTGTCCGTACTATTTTACAGACAGCCCCTGCAT
TTGGTAGGCGCATTCCGCACGAGCCAAGCAGTAAAATGGACCGAGGGACA
GGTGCTACCTACTCCCACGTCGCCCGCACTGTGCTCAAATAAACAATTCC
CGGTTTTGGCATCTGCCTCTCTCAAACACGCAAAACACCAGCAGCAGCAC
CAGCGCCTTCAGGAACCTCCTCACTCGCGGGCCAACACCTGGAAGGCGTC
ATGTGACGATTCTCTACTCCCGATAGGCGTCCGCCGCGTGCTTCTTCCAC
CCGGATTGTGGCAGACGGTATTGGTCACGTTAACGATTGGCATGGGCATC
ACGCATGAGCCACGAACCCCTGCTCCCGCACTGTTTGTAAAGCCGTTTGC
ACTTGCCCTCAATAGCAGCGAATAATACTTCGCCGTGTGCTTTCAAAACA
CGGTAAAGCGATGCATCGTACAGCTCTCGCACGCCACAAAAGCCTAGCAG
AAACGTTCGAGTTCAGCACGCAACTGGACCGCACTCAAGTCTGTGCATCG
TCCGCTCCCACAAGCAGGTACCAAAATAAAAAAGACGATGCTTGAACACT
GACATCAACCATTACCGTCGACGTTGGTCCGATTTCAACAAACAAAAATC
CAAAGCTTCTTCGCCACGGTAAGGTGCTACAATCAGCACAGTCGATGAAT
CATTTTTACAGATCAAGACTAAGGTACATCATCTCACGAGTTAGCTGACT
TCACCGATCATGAAGGTAGCACTCAAGCATCGGCATGCCGTACTGCGGTT
AAATCTTGACCAGCCTCGGATGACAGTCGCTATTAACCAGACCGTGTGCG
AGCCAACTCGCATATTGCATAACCAATCGAAGAACCTGCCAGGTTTTACT
CGCTTTTACCCGCCATCCTGTTGTTGTCACCACACGGTCTGTTATTTCAA
ATGCGGCAAACACATGCCCAAACAGCTCACCGACCAGATTGCAACTCCCC
ACAGCCGAGTATAGGATTCGCTAGCGTTGCTTCGATCACTCGCATAAAAG
CAGAATTTTCAGCCGACACCAGAATGGAGCCTTCACACAATCTCCACCAA
AAGACAAAAAAACAGTATAGATGTTCCGATGAGCACTTATGCTCGTGCCG
AGCACTGCGACGCAATAAGACTAAACCGACACGCCACAACAAGCAAAAGC
AAAGCTAAGCAGGGCACGGTCAGCACCCCACTACAAAAGTGCACGGCACG
AAAGAACGGAACTCATATCGTGACACATCTCGAACGCCGTGTATGCCAGA
GCTCTCTCGATATTCCTCACTCGGAGAATATGTCAATACAATGAGATCAC
AAGTAGTCGGTCTGTATGCTGTCCGACCATCCTCCCTCTCGCATCACCTC
AGAGCCCCGCGACGCTTTCCTTCAAAGACATGACAAAACTTTAAAATGTC
CAACACGACACAGATCATGTGCTAGACTTGGGAACACGGATATTGCTCTT
CTCTTGTGCATTCAAGAAACGGAGCGACGCTCGCATCTGCCAGGACCGCA
GTAGATTACTATCCTCATACTGTACTCACTATGAGCACAAGAGAGAGAGT
CAGTGCAAAGCAAGGACTTGATGTCTATGCCCTTGAACCGTGCTTGGTAT
CGTAATCAGCATCTGCCTGCACAGAAAGAGCGAAACATGTACTTAGCATG
GGGTACACGGAGCCTGGGACGTCGTGGGTGCTTGCCTTGGATTGCGCTGC
CGCGCTCGTGGTTCGTTGCATGGTACTGCAGATGTGCAGAGTAAGTGTT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1030:8715..10613-

>mRNA_H-fluviatilis_contig1030.626.1 ID=mRNA_H-fluviatilis_contig1030.626.1|Name=mRNA_H-fluviatilis_contig1030.626.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=690bp|location=Sequence derived from alignment at H-fluviatilis_contig1030:8715..10613- (Heribaudiella fluviatilis SAG_13_90)
ATGTTGTCCGTACTATTTTACAGACAGCCCCTGCATTTGGTAGGCGCATT
CCGCACGAGCCAAGCAGTAAAATGGACCGAGGGACAGGTGCTACCTACTC
CCACGTCGCCCGCACTGTGCTCAAATAAACAATTCCCGGTTTTGGCATCT
GCCTCTCTCAAACACGCAAAACACCAGCAGCAGCACCAGCGCCTTCAGGA
ACCTCCTCACTCGCGGGCCAACACCTGGAAGGCGTCATGTGACGATTCTC
TACTCCCGATAGGCGTCCGCCGCGTGCTTCTTCCACCATGTTGTCCGTAC
TATTTTACAGACAGCCCCTGCATTTGGTAGGCGCATTCCGCACGAGCCAA
GCAGTAAAATGGACCGAGGGACAGGTGCTACCTACTCCCACGTCGCCCGC
ACTGTGCTCAAATAAACAATTCCCGGTTTTGGCATCTGCCTCTCTCAAAC
ACGCAAAACACCAGCAGCAGCACCAGCGCCTTCAGGAACCTCCTCACTCG
CGGGCCAACACCTGGAAGGCGTCATGTGACGATTCTCTACTCCCGATAGG
CGTCCGCCGCGTGCTTCTTCCACCTTGGATTGCGCTGCCGCGCTCGTGGT
TCGTTGCATGGTACTGCAGATGTGCAGAGTAATTGGATTGCGCTGCCGCG
CTCGTGGTTCGTTGCATGGTACTGCAGATGTGCAGAGTAA
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