mRNA_H-fluviatilis_contig1030.624.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1030.624.1
Unique NamemRNA_H-fluviatilis_contig1030.624.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1030.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1030contigH-fluviatilis_contig1030:2660..4210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size848
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1030.624.1prot_H-fluviatilis_contig1030.624.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1030 2661..4113 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.898612-UTR-H-fluviatilis_contig1030:2659..26601622929072.898612-UTR-H-fluviatilis_contig1030:2659..2660Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 2660..2660 -
1691135172.3457272-UTR-H-fluviatilis_contig1030:2659..26601691135172.3457272-UTR-H-fluviatilis_contig1030:2659..2660Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 2660..2660 -
1622929072.9592278-UTR-H-fluviatilis_contig1030:4113..42101622929072.9592278-UTR-H-fluviatilis_contig1030:4113..4210Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 4114..4210 -
1691135172.3715844-UTR-H-fluviatilis_contig1030:4113..42101691135172.3715844-UTR-H-fluviatilis_contig1030:4113..4210Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1030 4114..4210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.9168363-CDS-H-fluviatilis_contig1030:2660..27321622929072.9168363-CDS-H-fluviatilis_contig1030:2660..2732Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 2661..2732 -
1691135172.3537858-CDS-H-fluviatilis_contig1030:2660..27321691135172.3537858-CDS-H-fluviatilis_contig1030:2660..2732Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 2661..2732 -
1622929072.9390972-CDS-H-fluviatilis_contig1030:3435..41131622929072.9390972-CDS-H-fluviatilis_contig1030:3435..4113Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 3436..4113 -
1691135172.361621-CDS-H-fluviatilis_contig1030:3435..41131691135172.361621-CDS-H-fluviatilis_contig1030:3435..4113Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1030 3436..4113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1030.624.1

>prot_H-fluviatilis_contig1030.624.1 ID=prot_H-fluviatilis_contig1030.624.1|Name=mRNA_H-fluviatilis_contig1030.624.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=250bp
MDVSDVEYRADALPDEDDYEAGPTCPSIAGVNDQTSAKIQNRPSREDSTA
QHRTQTKSNAERLRPSITSLISYTTAAAPVPDHFTDLPDDASSATRRESR
NPHQRRLTSNTPTAKLDAAKHHTITPTSRTSSSSPTVLSGDDRPAAWGTE
NLLGPRGPRTLHGVGGKSGFRTPLAISGGVLGVGAGDGSVGDGIHHCPYT
AMGGGPIESPPTAHKRGDAGEREDGNRPAEKSCNSRRTRRNGNRLSRQK*
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mRNA from alignment at H-fluviatilis_contig1030:2660..4210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1030.624.1 ID=mRNA_H-fluviatilis_contig1030.624.1|Name=mRNA_H-fluviatilis_contig1030.624.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-fluviatilis_contig1030:2660..4210- (Heribaudiella fluviatilis SAG_13_90)
GTGCAAAATATGTCAGTAGCCATACTAGTTGTAGGCCAGATCATGCGAGG
ACAGTGCAGTCGAACGCTGTTGTAGAACGTCGCGGTGTGAGGAAACGATG
GACGTTTCGGATGTGGAGTATCGTGCTGACGCTTTGCCTGATGAGGATGA
TTATGAGGCAGGCCCAACTTGCCCATCTATCGCAGGGGTGAATGACCAAA
CATCCGCGAAAATCCAAAATCGGCCTTCGAGAGAAGACAGCACAGCCCAA
CACCGGACCCAAACCAAGTCGAATGCAGAGCGTCTGAGGCCCTCGATAAC
CTCTCTCATCTCATACACAACGGCAGCCGCCCCTGTTCCCGACCACTTTA
CCGACCTTCCAGACGATGCGTCATCTGCCACACGCAGGGAATCGCGGAAT
CCTCACCAGCGACGCTTGACTTCAAATACTCCCACCGCAAAACTTGATGC
CGCAAAACATCACACCATAACGCCTACAAGTCGCACAAGTTCCAGCTCGC
CCACGGTATTGTCAGGCGATGATAGACCCGCTGCGTGGGGCACAGAAAAT
CTCTTAGGGCCGAGAGGACCGCGGACTTTGCACGGAGTTGGTGGGAAAAG
CGGGTTCAGGACTCCATTGGCCATATCCGGCGGGGTGTTGGGAGTTGGGG
CCGGTGATGGGAGCGTTGGCGACGGAATCCACCATTGTCCTTACACCGCC
ATGGGCGGAGGTCCTATCGAATCGCCCCCCACAGCACACAAGAGGGGTGA
CGCCGGGGAAAGAGAGGATGGAAATGTGAGCCGTCTTGACTTTGCTGTGG
TTGTAAGGCGGTACACCTGTGCCGTAATGTTTCACGGACGAAAACGATTG
CGGTACAGACTATCGGGAGGGGTTCCGTATGGGAAACTCTCAAAACGCCC
AGCGTTTTCTCTTGATGTATCACACTATGCAGAGAACACCCTGTAGAACA
CGGGTACGTTCCTACCAGTGTCCGTCGAGGAGAGTACCCTCTTTTCACAA
TAGCAACACCGGTGAGATGTCCACTGTCTGAAGGTAAGCTGCATTCTGCC
AGGCTGGCTTCAGGGTGTGGGACACGACGCGAAGACCGGGGGTGGCACTT
TCTCTCTCAGAATGTCAGACAGGTTGGGGGGTGGCGCACATTTCCAGAAG
CCTCTGGAACGGTTTGAACACCTTTCCGCCAGACGTGAAGAACAAGAGTG
GAACTCCTCACCGCCAACCGGTCGGGTTCCTGTTACCCCTAGTAGCCTCT
TGCGAGCAAGAGACTCGTGAAGGGGGGGGAGATGTGGAGAATACCAAGAA
GAAGGGGTAAGCTCCCACAAATGTCCGTCAAGGACAGTCGCCTCTTTTCG
CGACCAGTATTCCATTCATGTTGGGAGCAGCGTTGGATGAAGGGATTTCC
TGTTTTTCTGGGGCTTATTTCACCTCCTGTCGCCATCGCCGGGTATCCTC
CTGCACCACTGTACGACGAGTATTTTAGAGGCCTGCAGAAAAGAGCTGCA
ACTCACGAAGAACGAGGAGGAATGGAAATCGGCTTTCAAGACAGAAATGA
A
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1030:2660..4210-

>mRNA_H-fluviatilis_contig1030.624.1 ID=mRNA_H-fluviatilis_contig1030.624.1|Name=mRNA_H-fluviatilis_contig1030.624.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1500bp|location=Sequence derived from alignment at H-fluviatilis_contig1030:2660..4210- (Heribaudiella fluviatilis SAG_13_90)
ATGGACGTTTCGGATGTGGAGTATCGTGCTGACGCTTTGCCTGATGAGGA
TGATTATGAGGCAGGCCCAACTTGCCCATCTATCGCAGGGGTGAATGACC
AAACATCCGCGAAAATCCAAAATCGGCCTTCGAGAGAAGACAGCACAGCC
CAACACCGGACCCAAACCAAGTCGAATGCAGAGCGTCTGAGGCCCTCGAT
AACCTCTCTCATCTCATACACAACGGCAGCCGCCCCTGTTCCCGACCACT
TTACCGACCTTCCAGACGATGCGTCATCTGCCACACGCAGGGAATCGCGG
AATCCTCACCAGCGACGCTTGACTTCAAATACTCCCACCGCAAAACTTGA
TGCCGCAAAACATCACACCATAACGCCTACAAGTCGCACAAGTTCCAGCT
CGCCCACGGTATTGTCAGGCGATGATAGACCCGCTGCGTGGGGCACAGAA
AATCTCTTAGGGCCGAGAGGACCGCGGACTTTGCACGGAGTTGGTGGGAA
AAGCGGGTTCAGGACTCCATTGGCCATATCCGGCGGGGTGTTGGGAGTTG
GGGCCGGTGATGGGAGCGTTGGCGACGGAATCCACCATTGTCCTTACACC
GCCATGGGCGGAGGTCCTATCGAATCGCCCCCCACAGCACACAAGAGGGG
TGACGCCGGGGAAAGAGAGGATGGAAATATGGACGTTTCGGATGTGGAGT
ATCGTGCTGACGCTTTGCCTGATGAGGATGATTATGAGGCAGGCCCAACT
TGCCCATCTATCGCAGGGGTGAATGACCAAACATCCGCGAAAATCCAAAA
TCGGCCTTCGAGAGAAGACAGCACAGCCCAACACCGGACCCAAACCAAGT
CGAATGCAGAGCGTCTGAGGCCCTCGATAACCTCTCTCATCTCATACACA
ACGGCAGCCGCCCCTGTTCCCGACCACTTTACCGACCTTCCAGACGATGC
GTCATCTGCCACACGCAGGGAATCGCGGAATCCTCACCAGCGACGCTTGA
CTTCAAATACTCCCACCGCAAAACTTGATGCCGCAAAACATCACACCATA
ACGCCTACAAGTCGCACAAGTTCCAGCTCGCCCACGGTATTGTCAGGCGA
TGATAGACCCGCTGCGTGGGGCACAGAAAATCTCTTAGGGCCGAGAGGAC
CGCGGACTTTGCACGGAGTTGGTGGGAAAAGCGGGTTCAGGACTCCATTG
GCCATATCCGGCGGGGTGTTGGGAGTTGGGGCCGGTGATGGGAGCGTTGG
CGACGGAATCCACCATTGTCCTTACACCGCCATGGGCGGAGGTCCTATCG
AATCGCCCCCCACAGCACACAAGAGGGGTGACGCCGGGGAAAGAGAGGAT
GGAAATAGGCCTGCAGAAAAGAGCTGCAACTCACGAAGAACGAGGAGGAA
TGGAAATCGGCTTTCAAGACAGAAATGAAGGCCTGCAGAAAAGAGCTGCA
ACTCACGAAGAACGAGGAGGAATGGAAATCGGCTTTCAAGACAGAAATGA
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