mRNA_H-fluviatilis_contig103.623.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE) HSP 1 Score: 285 bits (730), Expect = 1.060e-81 Identity = 174/433 (40.18%), Postives = 251/433 (57.97%), Query Frame = 1
Query: 265 LVVFFRARNVFEIRARSAKLVTLLGLAFLAAEMQLVELAIVNLYGQNGSIAWKKSTIYREYFRTFITTMAYVSRVIRLCVAYEPSFRRVVPWLLSENLLLCVCLSVGVLSMAIPLHGHLAIKGPTEEETHSMFEDEQEEHLWSCKVAMRVLECSLIPAVWMIDDIFNISHELMILIVFGITETVLSRLCAENAFNS-VSRWINGGNFETISCGIVFWFSVANPARRLIFHPMSGTRAAEIAENAKPCEIKEDIPGVKRTLRSDSGLEGGGTADNTPTEDTAH--WNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDYSAITPGGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKVTQTTRPPPTPSRRV 1554
LV+FFRAR+VFEIRARS LVT LGL L E V+L + L+G + ++ F TF Y+SRVIRL V + P RR +P L+SE LL+ V LS+GV+S++IP++ + + P E+ + D Q W C + +++ + L+P VW IDD+F+IS ELM++IV G+ ++V +L E + +IN N + ++ ++F SV +P RRL F PM A+++ P +T + G TP+E+ A W Y+ IA A+A AF FA RALCQESV FLEEV+RY+N DY+ +P G I AFEAI K+F+ DGAPDE+N+S+ KK I+ + G S D++L +FD+AY I++M+ESNI+ F++TDEF K + PP RR+
Sbjct: 8 LVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPANYFTNNLLVF---FVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKITV--PNED-----YRDHQAGVKWLCTLVLQITQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLFIEEELTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPM--------AQSSAPMTRAVLRSSASKTQKPRRGXXXXQQRKITPSEEAAQHMWTYDKIALDNAMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEPS--DEELSGIFDRAYSHIRYMIESNIVHKFLETDEFRKAANSV-PPSRRERRL 419
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI) HSP 1 Score: 164 bits (414), Expect = 9.480e-40 Identity = 120/357 (33.61%), Postives = 178/357 (49.86%), Query Frame = 1
Query: 184 DGTPMDRTLHLVRLVVGSALVVIGGITLVVFFRARNVFEIRARSAKLVTLLGLAFLAAEMQLVELAIVNLYGQNGSIAWKKSTIYREYFRTFITTMA----YVSRVIRLCVAYEPSFRRVVPWLLSENLLLCVCLSVGVLSMAIPLHGHLAI-KGPTEEETHSMFEDEQEEHLWSCKVAMRVLECSLIPAVWMIDDIFNISHELMILIVFGITETVLSRLCAENAFNSVSRWINGGNFETISCGIVFWFSVANPARRLIFHPM--SGTRAAEIAENAKPCEIKEDIPGVKRTLRSDSGLEGGGTADNTPTEDTAHWNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGD 1233
D TP D + LVV S L+V+ + + + R+VFEIRARSA LV LLG + + A +N+ GQ+ I +Y + F + Y SR IRL V + RRVVPWL SE +C+CL +G S+ PL+ + GP E +F + LW +A + + SL P VW DDIFNIS EL ++IV + T++ ++ V+RW+N IS ++F+ S+ P R+L+F P+ S R + + + + S +G E G NT A W YE + P+++ AFH F+++ALCQES+ FL++V N D
Sbjct: 51 DHTPTDVGIAWFLLVVSSGLLVVMTGVMFLLIKNRHVFEIRARSACLVMLLGASTMTA-------LAMNMVGQSVVIFNALPNLYTFFMLYFFILVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCMCLVLGAGSLGFPLYVMYDVGDGPFAE---LLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVIVLTFSTTLIGHFGDNHSSEDVARWVNTRIMGFISATVIFFLSLGLPIRQLVFDPLESSDPRVSRALAKRRQGRLGPEST-TTPCCTSSAGSEFSGV--NT----LALWTYEKVEAMPSVSVAFHEFSRKALCQESIFFLKDVTNSGNKD 390
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 137 bits (346), Expect = 4.000e-30 Identity = 120/464 (25.86%), Postives = 187/464 (40.30%), Query Frame = 1
Query: 472 AYVSRVIRLCVAYEPSFRRVVPWLLSENLLLCVCLSVGVLSMAIPLHGHLAIKGPTEEETHSMFE--DEQEEHLWSCKVAMRVLECSLIPAVWMIDDIFNISHELMILIVFGITETVLSRLCAENAFNSVSRWINGGNFETISCGIVFWFSVANPARRLIFHPMSGTR----------------------AAEIAENAKPCEIKEDIP------------------------------------GVKRTLRSDS----------------------------------------------------GLEGGGTADNTPT-EDTAHWNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDYSAITP----GGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKV 1512
+Y+ R +RL V + P +R +PWL+ E + V L V V MAIP++ +E T ++E +Q L + + V + P + +DD+FNIS EL+++ V + V+ + AE RW+ G N ++F S+ +P RRL P++ T+ + P I+ + GV T +D+ G GGG P E+ WN+E +A P LA AF +++RALC ESV FL EV+RY++ DY+ T F I FI G+P+E+NIS A KK IL L Q G+ ++++ R++F +AY ++K MLE+N+L+ F++TD F V
Sbjct: 54 SYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIY---------QEYTLEVWEIIPKQTTILTTEALVFAVTLACIYPFIRNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYEQRWV-GNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPSRIRANSEEEARLEEGDLGGVLDKDETTTAGDVSNVVASAVVGNGVITTSTADTNDAVAAGTWNEREPINTSVFTKQSSSVSNDTSIGGNRRDVVQRGPRERAFFRGRRGGGGGRGRPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDAIRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFE-DVNEEERRLIFGRAYLEVKSMLEANLLRRFLNTDRFKSV 506
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: D7G1D4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D4_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.410e-25 Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 1
Query: 1078 DNTPTEDTAHWNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDYSAITPGGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKVTQTTRPPPTP 1542
D T + W+Y+ + P +A AF FA RALCQES+ FLE V +Y++GDYS P AF AIVK+F+ DGA DEINI K+ IL++ Q G +D R+V +KAY +I+ MLE+N+L F+ T+ F + P P P
Sbjct: 58 DETASTVRTKWSYDTMTTVPEVAEAFRGFAHRALCQESIMFLEAVTQYESGDYSIAKPIAS-QFAAFNAIVKRFVADGALDEINIGGTDKERILKIFQCGSTAF-FEMNDAGRRLVLNKAYIEIRDMLETNLLYRFLHTEAFRTLLAEADPDPGP 210
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: A0A6H5KIU5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU5_9PHAE) HSP 1 Score: 112 bits (279), Expect = 7.480e-25 Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 1
Query: 1123 IAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDYSAITPGGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKVTQTTRPPPTP 1542
+A+ P +A AF FA RALCQES+ FLEEV +Y++GDYS P AF AIVK+F+VDGA DEINI K+ IL++ Q G ++ R+V +KAY +I+ MLE+N+L F+ T+ F + P P P
Sbjct: 1 MAKVPEVAEAFRGFAHRALCQESIMFLEEVTKYESGDYSIAKPIAS-QFAAFNAIVKRFVVDGALDEINIGGTDKERILKIFQSGSTAF-FEMNEAGRRLVLNKAYIEIRDMLETNLLHRFLHTEAFRTLLAGADPNPGP 138
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE) HSP 1 Score: 120 bits (302), Expect = 7.950e-25 Identity = 112/449 (24.94%), Postives = 176/449 (39.20%), Query Frame = 1
Query: 472 AYVSRVIRLCVAYEPSFRRVVPWLLSENLLLCVCLSVGVLSMAIPLHGHLAIKGPTEEETHSMFEDEQEEHLWSCKVAMRVLECSLIPAVWMIDDIFNISHELMILIVFGITETVLSRLCAENAFNSVSRWINGGNFETISCGIVFWFSVANPARRLIFHPMSG---------------TRAAEIAENAKPCEIKEDIPGVKRTLRSDS-----GLEGGGTADN-------TPT--------------------------------------------------------------------------EDTAHWNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDYSAITP-GGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKV 1512
+Y+ R +RL V + P ++ +PWL+ E L + V + +P++ + ++ VW +DD+FNIS EL+I+ + + +L+ + V W GGN VF SV P R L P++G TR+ +++ +AK DI G R +R S GL G G +N TP E W++E +A P +AAAF A+ ++ALC E V FL EV+RY++GD+ G AF I FI G+ +E++IS +K ++ L GDV L +G++++ R+VF +AY ++K MLE N+L+ F+ TD F V
Sbjct: 47 SYICRALRLAVIFHPRAKQALPWLIPERNHLFFLSATVVAFLIVPIYQDMTLE------------------------------------VWKVDDLFNISRELIIVTILFL---ILAIGIKCGLYYEVDMW-TGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRSEDVSYSAK---ATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXATSLYDEPPPANLSPSPSPGDPGAGNWQYQGINFCTSRGGGAGXXXXXXXXXXXXXXXXEEMVEAWDFERLARKPLVAAAFEAYTRKALCHECVLFLREVSRYQSGDFPEPAGLSGPSQYQAFCRINDVFIRPGSREEVSISGVERKRLMELAHKGDV-LFEAGTEEERRLVFARAYLEVKTMLEDNLLRRFLQTDRFKSV 451
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 7.930e-17 Identity = 75/262 (28.63%), Postives = 126/262 (48.09%), Query Frame = 1
Query: 199 DRTLHLVRLVVGSALVVIGGITLVVFFRARNVFEIRARSAKLVTLLGLAFLAAEMQLVELAIVNLYGQNGSIAWKKSTIYREYFRTFITTMAYVSRVIRLCVAYEPSFRRVVPWLLSENLLLCVCLSVGVLSMAIPLHGH--LAIKGPTEEETHSMFEDEQEEHLWSCKVAMRVLECSLI---PAVWMIDDIFNISHELMILIVFGITETVLSRLCAENAFNSVSRWINGGNFETISCGIVFWFSVANPARRLIFHPMSGTR 969
D+ L LVRL +G +V+G LV F+R+R + +IR RSA LVTL G++ L + + V A ++ W ++ F + +Y+ R +RL V + P + +PWL+ E L V L + +AIP++ L + ++T + K RVL L+ P + +DD+FNIS EL+ + V + T++ + + N RW+ N + ++F S+ P RRL P++ T+
Sbjct: 60 DKALALVRLGLGCCFIVLGTYALVRFYRSRWILDIRTRSAHLVTLQGVSLLLSMLVTVNGATTIVWDSGLDWFWISLLLF---FVSPALFGSYICRALRLAVVFNPRAKSALPWLIPERNYLAVLLLASIGILAIPIYHEYTLEVWDAIPKQTSIL------------KAQARVLAVMLVCIYPFIRNVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFEQRWLTS-NISVVFVAVLFCISIVAPLRRLALDPLAATK 305
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 9.980e-13 Identity = 59/196 (30.10%), Postives = 90/196 (45.92%), Query Frame = 1
Query: 964 TRAAEIAENAKPCEIKEDIPGVKRTLRSDSGLEGGG------TADNTPTEDTAHWNYEMIAECPALAAAFHAFAQRALCQESVCFLEEVARYKNGDY-------SAITPGGRCPIVAFEAIVKKFIVDGAPDEINISHARKKAILRLCQPGDVGLRVSGSDDQLRVVFDKAYFDIKFMLESNILQSFIDTDEFCKV 1512
T ++ +AE + G + + G G + + E+ W++E IA P LAAAF +++RALC ESV FL EV+RY+N +Y SA +P R +F I FI G+ +E+NI R++F +AY D+K MLE+N++ F++TD F V
Sbjct: 286 TNSSVVAEGSSSVSNDNSTRGRRGAFQRVQRARGSGRDRGCSSRSRSDREEMEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSP--RIQFGSFCYITDTFIKAGSSEEVNI----------------------------RMIFSRAYRDVKNMLEANLVLRFLNTDRFKNV 451 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig103.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig103.623.1 >prot_H-fluviatilis_contig103.623.1 ID=prot_H-fluviatilis_contig103.623.1|Name=mRNA_H-fluviatilis_contig103.623.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=466bp MSVVDGTPMDRTLHLVRLVVGSALVVIGGITLVVFFRARNVFEIRARSAKback to top mRNA from alignment at H-fluviatilis_contig103:15739..29763+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig103.623.1 ID=mRNA_H-fluviatilis_contig103.623.1|Name=mRNA_H-fluviatilis_contig103.623.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=14025bp|location=Sequence derived from alignment at H-fluviatilis_contig103:15739..29763+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig103:15739..29763+ >mRNA_H-fluviatilis_contig103.623.1 ID=mRNA_H-fluviatilis_contig103.623.1|Name=mRNA_H-fluviatilis_contig103.623.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2796bp|location=Sequence derived from alignment at H-fluviatilis_contig103:15739..29763+ (Heribaudiella fluviatilis SAG_13_90)back to top |