mRNA_H-fluviatilis_contig102992.622.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102992.622.1
Unique NamemRNA_H-fluviatilis_contig102992.622.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102992.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102992contigH-fluviatilis_contig102992:60..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.5236347-CDS-H-fluviatilis_contig102992:59..3461622929072.5236347-CDS-H-fluviatilis_contig102992:59..346Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102992 60..346 -
1691135172.1694994-CDS-H-fluviatilis_contig102992:59..3461691135172.1694994-CDS-H-fluviatilis_contig102992:59..346Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102992 60..346 -
1622929072.5363297-CDS-H-fluviatilis_contig102992:401..4711622929072.5363297-CDS-H-fluviatilis_contig102992:401..471Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102992 402..471 -
1691135172.177737-CDS-H-fluviatilis_contig102992:401..4711691135172.177737-CDS-H-fluviatilis_contig102992:401..471Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102992 402..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102992.622.1prot_H-fluviatilis_contig102992.622.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102992 60..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102992.622.1

>prot_H-fluviatilis_contig102992.622.1 ID=prot_H-fluviatilis_contig102992.622.1|Name=mRNA_H-fluviatilis_contig102992.622.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=119bp
SSSSLLTKDIFSALDVDSDNLSDELNKLLVTRQTQQQSKTTTAVPELVGK
KTAKKRPKKITNAAKTLPAKTMSTASAVRSHDVLASAETEDEVFPVTPET
LAHYTHNNSASSSSGSSSS
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mRNA from alignment at H-fluviatilis_contig102992:60..471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102992.622.1 ID=mRNA_H-fluviatilis_contig102992.622.1|Name=mRNA_H-fluviatilis_contig102992.622.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=412bp|location=Sequence derived from alignment at H-fluviatilis_contig102992:60..471- (Heribaudiella fluviatilis SAG_13_90)
TCCTCATCCTCGTTGCTCACCAAAGACATATTCTCTGCGTTGGACGTGGA
CAGCGACAATCTGTCTGACGGTGAGCAGAAGCTAAAACAAGGACCGCGTT
TACTATTTTTCGCGTGTTTTGTTAGAACTCAACAAACTGCTTGTCACACG
ACAAACACAGCAGCAGTCCAAAACCACCACGGCCGTGCCCGAGCTCGTCG
GCAAAAAGACTGCGAAGAAAAGGCCAAAGAAAATAACGAACGCAGCAAAG
ACGCTTCCCGCCAAGACAATGTCAACCGCGAGTGCGGTGCGATCCCACGA
TGTATTGGCGAGCGCTGAGACAGAGGATGAAGTCTTTCCGGTCACACCGG
AGACACTCGCCCATTACACCCACAACAATAGTGCCAGCAGCAGTAGCGGA
AGCAGTAGCAGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102992:60..471-

>mRNA_H-fluviatilis_contig102992.622.1 ID=mRNA_H-fluviatilis_contig102992.622.1|Name=mRNA_H-fluviatilis_contig102992.622.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=714bp|location=Sequence derived from alignment at H-fluviatilis_contig102992:60..471- (Heribaudiella fluviatilis SAG_13_90)
TCCTCATCCTCGTTGCTCACCAAAGACATATTCTCTGCGTTGGACGTGGA
CAGCGACAATCTGTCTGACGTCCTCATCCTCGTTGCTCACCAAAGACATA
TTCTCTGCGTTGGACGTGGACAGCGACAATCTGTCTGACGAACTCAACAA
ACTGCTTGTCACACGACAAACACAGCAGCAGTCCAAAACCACCACGGCCG
TGCCCGAGCTCGTCGGCAAAAAGACTGCGAAGAAAAGGCCAAAGAAAATA
ACGAACGCAGCAAAGACGCTTCCCGCCAAGACAATGTCAACCGCGAGTGC
GGTGCGATCCCACGATGTATTGGCGAGCGCTGAGACAGAGGATGAAGTCT
TTCCGGTCACACCGGAGACACTCGCCCATTACACCCACAACAATAGTGCC
AGCAGCAGTAGCGGAAGCAGTAGCAGCAACTCAACAAACTGCTTGTCACA
CGACAAACACAGCAGCAGTCCAAAACCACCACGGCCGTGCCCGAGCTCGT
CGGCAAAAAGACTGCGAAGAAAAGGCCAAAGAAAATAACGAACGCAGCAA
AGACGCTTCCCGCCAAGACAATGTCAACCGCGAGTGCGGTGCGATCCCAC
GATGTATTGGCGAGCGCTGAGACAGAGGATGAAGTCTTTCCGGTCACACC
GGAGACACTCGCCCATTACACCCACAACAATAGTGCCAGCAGCAGTAGCG
GAAGCAGTAGCAGC
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