mRNA_H-fluviatilis_contig102949.617.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102949.617.1
Unique NamemRNA_H-fluviatilis_contig102949.617.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102949.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102949contigH-fluviatilis_contig102949:2..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size414
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102949.617.1prot_H-fluviatilis_contig102949.617.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102949 15..317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.9377363-UTR-H-fluviatilis_contig102949:1..141622929071.9377363-UTR-H-fluviatilis_contig102949:1..14Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 2..14 -
1691135172.0018542-UTR-H-fluviatilis_contig102949:1..141691135172.0018542-UTR-H-fluviatilis_contig102949:1..14Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 2..14 -
1622929072.086515-UTR-H-fluviatilis_contig102949:317..3671622929072.086515-UTR-H-fluviatilis_contig102949:317..367Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 318..367 -
1691135172.0290768-UTR-H-fluviatilis_contig102949:317..3671691135172.0290768-UTR-H-fluviatilis_contig102949:317..367Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 318..367 -
1622929072.1328986-UTR-H-fluviatilis_contig102949:399..5101622929072.1328986-UTR-H-fluviatilis_contig102949:399..510Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 400..510 -
1691135172.037366-UTR-H-fluviatilis_contig102949:399..5101691135172.037366-UTR-H-fluviatilis_contig102949:399..510Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102949 400..510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.0285974-CDS-H-fluviatilis_contig102949:14..1361622929072.0285974-CDS-H-fluviatilis_contig102949:14..136Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102949 15..136 -
1691135172.01329-CDS-H-fluviatilis_contig102949:14..1361691135172.01329-CDS-H-fluviatilis_contig102949:14..136Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102949 15..136 -
1622929072.0526867-CDS-H-fluviatilis_contig102949:199..3171622929072.0526867-CDS-H-fluviatilis_contig102949:199..317Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102949 200..317 -
1691135172.0211987-CDS-H-fluviatilis_contig102949:199..3171691135172.0211987-CDS-H-fluviatilis_contig102949:199..317Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102949 200..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102949.617.1

>prot_H-fluviatilis_contig102949.617.1 ID=prot_H-fluviatilis_contig102949.617.1|Name=mRNA_H-fluviatilis_contig102949.617.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=80bp
MIVPDGQTSLLTCNTSYVPSGPDVQCDDGAFVGPVPICLALCAGIPASFP
VGINASACAKLPAGVQWLVGAGLCSPTHS*
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mRNA from alignment at H-fluviatilis_contig102949:2..510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102949.617.1 ID=mRNA_H-fluviatilis_contig102949.617.1|Name=mRNA_H-fluviatilis_contig102949.617.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=509bp|location=Sequence derived from alignment at H-fluviatilis_contig102949:2..510- (Heribaudiella fluviatilis SAG_13_90)
AGTTTCCTGTCCAATGGGCGTCAGGGCCCGACAATACCCTGACCGTCAAG
CTACAGGTCCTCTCCTCGGAAGGTGGCGAAATCCTCCGCTTCAATAATGT
TGAGTTTGAATGTAAGTTGCTCAAATGCACATGGTTTGTTTAGCGAGGGC
ATCGTGTCCGACGCCCAACCAGACGCTCGGTAGTTTTACACCGATGATTG
TACCGGATGGTCAAACCTCGTTGCTGACATGCAACACAAGTTATGTTCCA
AGTGGACCGGATGTACAGTGCGACGATGGTGCGTTCGTTGGCCCTGTTCC
TATCTGCCTGGGTCAGTTTCCCTCCACTGCTTTCACTCTCCGTCACTTTT
ATCAAAAAAGTGTGTATTTTGCAGCCCTGTGCGCGGGGATTCCTGCCTCA
TTCCCTGTGGGTATCAACGCCTCGGCCTGCGCCAAACTGCCGGCAGGTGT
GCAGTGGTTGGTTGGAGCAGGACTATGCAGTCCTACGCATTCCTGATCTT
ACGAAGCAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102949:2..510-

>mRNA_H-fluviatilis_contig102949.617.1 ID=mRNA_H-fluviatilis_contig102949.617.1|Name=mRNA_H-fluviatilis_contig102949.617.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=480bp|location=Sequence derived from alignment at H-fluviatilis_contig102949:2..510- (Heribaudiella fluviatilis SAG_13_90)
ATGATTGTACCGGATGGTCAAACCTCGTTGCTGACATGCAACACAAGTTA
TGTTCCAAGTGGACCGGATGTACAGTGCGACGATGGTGCGTTCGTTGGCC
CTGTTCCTATCTGCCTGGATGATTGTACCGGATGGTCAAACCTCGTTGCT
GACATGCAACACAAGTTATGTTCCAAGTGGACCGGATGTACAGTGCGACG
ATGGTGCGTTCGTTGGCCCTGTTCCTATCTGCCTGGCCCTGTGCGCGGGG
ATTCCTGCCTCATTCCCTGTGGGTATCAACGCCTCGGCCTGCGCCAAACT
GCCGGCAGGTGTGCAGTGGTTGGTTGGAGCAGGACTATGCAGTCCTACGC
ATTCCTGACCCTGTGCGCGGGGATTCCTGCCTCATTCCCTGTGGGTATCA
ACGCCTCGGCCTGCGCCAAACTGCCGGCAGGTGTGCAGTGGTTGGTTGGA
GCAGGACTATGCAGTCCTACGCATTCCTGA
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