mRNA_H-fluviatilis_contig102943.616.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102943.616.1
Unique NamemRNA_H-fluviatilis_contig102943.616.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A7S1LVJ3_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LVJ3_ALECA)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-12
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 2
Query:   20 GSREDALF-----LLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGTGQ 214
            GSRE+        +LD I T LF  EF+LK +AWG  +   RSY R+ WNWLDFVV++   + FIPG   
Sbjct:   25 GSREETWNWLVDNVLDRILTVLFTQEFILKVIAWGF-FLDKRSYLRELWNWLDFVVVITALVSFIPGMDS 93          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A813G2J2_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2J2_POLGL)

HSP 1 Score: 64.3 bits (155), Expect = 2.790e-10
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 2
Query:    2 SNHIGIGSREDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGT 208
            S+  G G    A  ++D I T  F LEFVLK +A+G  +   +SY RD WNWLDFVV+V   I +IPG 
Sbjct:  126 SDDNGSGFNWVANTVIDPILTGFFTLEFVLKVIAFGF-FLDQKSYLRDAWNWLDFVVVVTANITYIPGV 193          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: L1IFM0_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFM0_GUITC)

HSP 1 Score: 63.9 bits (154), Expect = 3.850e-10
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 2
Query:   26 REDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGTG 211
              D L     I++A FILEFV K +A G +  GP +Y RD WNWLD +V++  C+ F+P + 
Sbjct:  322 HRDFLDFSSKIFSAFFILEFVAKIIALGFM-VGPNTYLRDAWNWLDLLVVIIGCLDFMPSSN 382          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.140e-8
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 2
Query:   26 REDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPG 205
            R   LF  +A++TA F LEFVLK +A G  + G  SY RD WN LDF+V+V   +  IPG
Sbjct:  106 RNALLFESEAVFTAFFTLEFVLKVIAQGF-YLGRGSYLRDSWNILDFMVVVTALMTSIPG 164          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: L1IVS0_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IVS0_GUITC)

HSP 1 Score: 58.9 bits (141), Expect = 2.240e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 2
Query:   29 EDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGTGQ 214
            ++ L + + I+TALF  E V+K +A G V     +Y RDGWNW+DFVV++   I  +PG  Q
Sbjct:  198 QNVLQVFEYIFTALFTAEMVVKIIARGFV-LHKHAYLRDGWNWIDFVVVICGLISLVPGLIQ 258          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.240e-8
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 2
Query:   26 REDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPG 205
            R   LF  +A++TA F LEFVLK +A G  + G  SY RD WN LDF+V+V   +  IPG
Sbjct:  106 RNALLFESEAVFTAFFTLEFVLKVIAQGF-YLGRGSYLRDSWNILDFMVVVTALMTSIPG 164          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A7S0HKR1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HKR1_9CRYP)

HSP 1 Score: 58.5 bits (140), Expect = 3.050e-8
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 2
Query:   26 REDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGT 208
              D L     I++  FILEF+ K +A G V+ G  +Y RD WNWLD +V++  C+ F+P +
Sbjct:  313 HRDFLDFSSKIFSLFFILEFLAKTIALG-VFVGRNTYLRDAWNWLDLLVVIIGCLDFMPSS 372          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A7S4DBJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ0_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 4.700e-8
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 2
Query:   26 REDALFLLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFI 199
            R + L + + I++A+FILE VLK  A+G +  G  +Y RDGWN LDFVV+V   ++F+
Sbjct:   18 RNNLLDVTEYIFSAVFILECVLKVCAYGFI-LGKNTYLRDGWNCLDFVVVVAGLVEFV 74          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: G0QTB6_ICHMG (EF-hand domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QTB6_ICHMG)

HSP 1 Score: 57.4 bits (137), Expect = 7.810e-8
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 2
Query:   44 LLDAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGTGQ 214
            L D I+T +F+LE +LK +A+G  + GP SYFR   N LDF +++F    F     Q
Sbjct: 1087 LFDKIFTCIFVLEMILKIIAYGAFFNGPNSYFRQSQNILDFFIVIFSLFTFFDSIKQ 1143          
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Match: A0A8J2E4L1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2E4L1_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 7.820e-8
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   14 GIGSREDALFLL----DAIYTALFILEFVLKAVAWGLVWCGPRSYFRDGWNWLDFVVIVFCCIQFIPGT 208
            G G  ED+L  L    D ++  +FILE  LK +++GL+  G ++Y RD WNWLDF+V++   I F+  T
Sbjct:  293 GCGRDEDSLNKLIDIADPVFLCIFILECGLKIISYGLIQ-GKKTYLRDSWNWLDFIVVLTGIITFVLET 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102943.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1LVJ3_ALECA1.840e-1247.14Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A813G2J2_POLGL2.790e-1047.83Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
L1IFM0_GUITC3.850e-1043.55Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6H5JJ68_9PHAE2.140e-850.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
L1IVS0_GUITC2.240e-843.55Uncharacterized protein n=3 Tax=Guillardia theta T... [more]
D7FVE6_ECTSI2.240e-850.00Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A7S0HKR1_9CRYP3.050e-840.98Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4DBJ0_HETAK4.700e-846.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
G0QTB6_ICHMG7.810e-842.11EF-hand domain-containing protein n=1 Tax=Ichthyop... [more]
A0A8J2E4L1_9DINO7.820e-842.03Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102943contigH-fluviatilis_contig102943:385..760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.7724478-CDS-H-fluviatilis_contig102943:386..4311622929071.7724478-CDS-H-fluviatilis_contig102943:386..431Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102943 387..431 -
1691135171.960465-CDS-H-fluviatilis_contig102943:386..4311691135171.960465-CDS-H-fluviatilis_contig102943:386..431Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102943 387..431 -
1622929071.7869473-CDS-H-fluviatilis_contig102943:577..7601622929071.7869473-CDS-H-fluviatilis_contig102943:577..760Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102943 578..760 -
1691135171.9762855-CDS-H-fluviatilis_contig102943:577..7601691135171.9762855-CDS-H-fluviatilis_contig102943:577..760Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102943 578..760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102943.616.1prot_H-fluviatilis_contig102943.616.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102943 387..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102943.616.1

>prot_H-fluviatilis_contig102943.616.1 ID=prot_H-fluviatilis_contig102943.616.1|Name=mRNA_H-fluviatilis_contig102943.616.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=76bp
QQSHWDRLARGRAVSAGRHLHGALHPRVCAESGGVGPSVVRTALLLSRRL
ELARFCRHCVLLHSIHPGHGPSHFRA
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mRNA from alignment at H-fluviatilis_contig102943:385..760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102943.616.1 ID=mRNA_H-fluviatilis_contig102943.616.1|Name=mRNA_H-fluviatilis_contig102943.616.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=376bp|location=Sequence derived from alignment at H-fluviatilis_contig102943:385..760- (Heribaudiella fluviatilis SAG_13_90)
CAGCAATCACATTGGGATCGGCTCGCGCGAGGACGCGCTGTTTCTGCTGG ACGCCATCTACACGGCGCTCTTCATCCTCGAGTTTGTGCTGAAAGCGGTG GCGTGGGGCCTAGTGTGGTGCGGACCGCGCTCCTACTTTCGCGACGGCTG GAACTGGCTCGATTTTGTCGTCATTGTGTTTTGGTAACACACAAAATTTT CAAACAAATTCAACAAAACAAACCAAAACAGGCATCAGCCAGTGATGGGA GTGTGTGGGGTAATGTGTGTATGTCTGTGTGGGGTGATGTAGGCCATACG CACGTTGTGGTGTGGTGTGATTGCTGCAGTTGCATTCAATTCATCCCGGG CACGGGCCAAGTCATTTTCGTGCGTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102943:385..760-

>mRNA_H-fluviatilis_contig102943.616.1 ID=mRNA_H-fluviatilis_contig102943.616.1|Name=mRNA_H-fluviatilis_contig102943.616.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=456bp|location=Sequence derived from alignment at H-fluviatilis_contig102943:385..760- (Heribaudiella fluviatilis SAG_13_90)
CAGCAATCACATTGGGATCGGCTCGCGCGAGGACGCGCTGTTTCTGCTGG
ACGCCATCTACACGGCGCTCTTCATCCTCGAGTTTGTGCTGAAAGCGGTG
GCGTGGGGCCTAGTGTGGTGCGGACCGCGCTCCTACTTTCGCGACGGCTG
GAACTGGCTCGATTTTGTCGTCATTGTGTTTTGCAGCAATCACATTGGGA
TCGGCTCGCGCGAGGACGCGCTGTTTCTGCTGGACGCCATCTACACGGCG
CTCTTCATCCTCGAGTTTGTGCTGAAAGCGGTGGCGTGGGGCCTAGTGTG
GTGCGGACCGCGCTCCTACTTTCGCGACGGCTGGAACTGGCTCGATTTTG
TCGTCATTGTGTTTTGTTGCATTCAATTCATCCCGGGCACGGGCCAAGTC
ATTTTCGTGCGTTGCATTCAATTCATCCCGGGCACGGGCCAAGTCATTTT
CGTGCG
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