mRNA_H-fluviatilis_contig10294.613.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10294.613.1
Unique NamemRNA_H-fluviatilis_contig10294.613.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A6H5LDQ8_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDQ8_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 1.880e-107
Identity = 208/253 (82.21%), Postives = 218/253 (86.17%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGGSGETL----AASGAGDAHRRIRRRFKQSRPVADVGGGGGDRGGMDPAVLQSVFGSSRG 735
            YN+ LAKRGVVYLSRVPPFMKPAK+KHLMEQHGVVTRVYLVEEDQA RRARKK GGNSGKRY EGWVEFEDKK+ARA A+SLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVR+QKLRLETMQAKRENARYVELV SGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       G GE +    A +G GD+HRRIRRRFKQS PV DVGG       MD  VL+S+FG   G
Sbjct:   96 YNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKGGGNSGKRYAEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGGGEGVPGNPAPAGVGDSHRRIRRRFKQSNPVGDVGGXXXXX--MDAKVLRSLFGGDDG 346
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A2D4BVT2_PYTIN (Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVT2_PYTIN)

HSP 1 Score: 218 bits (556), Expect = 2.740e-66
Identity = 104/158 (65.82%), Postives = 126/158 (79.75%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            Y +R AKRGVVY+SRVPPFMKP K+KHL+ Q+G + RVYLV ED+A ++ R  AGGN   +YTEGW+EFEDKKVA+++A  LN   IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   + F KMEER
Sbjct:   38 YRERAAKRGVVYISRVPPFMKPEKLKHLLGQYGAINRVYLVPEDKAQQKRRVAAGGNRKTKYTEGWIEFEDKKVAKSVAAMLNTKQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIREQKLRMEIAQAKKENDAYLERVEQSKQFQKMEER 195
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: K3WDP5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP5_GLOUD)

HSP 1 Score: 211 bits (536), Expect = 4.010e-63
Identity = 115/247 (46.56%), Postives = 148/247 (59.92%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSGETLAASGAGDAHRRIRRRFKQSRPVADVGGGGGDRGGMDPAVLQSVFGSSRGKRK 744
            + ++  KRGVVY+SRVPPFMKP K+KHL+ Q+G + R+YLV ED+   + R  AGGN  + YTEGW+EFEDKKVA+ +A  LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   + F KMEER                                SG    A+     +++IRR F+Q  P +          G    +L+ VF S+  KRK
Sbjct:   44 FKKKAEKRGVVYISRVPPFMKPEKVKHLLGQYGDINRIYLVPEDKTHHKKRVAAGGNRKQSYTEGWIEFEDKKVAKQVAKVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLEKVEQSKKFEKMEERK-------------------------------SGANGGANDRDAQYQQIRRTFQQKAPTSSKQHSSL---GSSDTLLEKVFASAHKKRK 256
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A8K1FEZ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ1_PYTOL)

HSP 1 Score: 209 bits (533), Expect = 7.570e-63
Identity = 98/158 (62.03%), Postives = 125/158 (79.11%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            Y +R+AKRGVVY+SRVPP+MKP K+KHL+ ++G + R+YLV ED+  ++ R  AGGN   +YTEGWVEFE+KKVA+ +A  LN   IGGRKR+YYHDD+WNLKYL+ FKW+HLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   + F KMEER
Sbjct:   38 YRERVAKRGVVYISRVPPYMKPEKLKHLLSKYGDINRIYLVPEDKVQQKKRVAAGGNRKTKYTEGWVEFENKKVAKTVATMLNTKQIGGRKRDYYHDDIWNLKYLKGFKWEHLTEKIAYENRIRDQKLRMEIAQAKKENDAYLERVEQSKQFTKMEER 195
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A5D6Y296_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y296_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.180e-62
Identity = 101/159 (63.52%), Postives = 122/159 (76.73%), Query Frame = 1 
Query:    1 SYNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            ++ +R  KRGVVYLSRVPPFMKP K+KHL+ Q G + R+YLV ED+   + R  AGGN  + YTEGW+EFEDKKVAR +A  LN   IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLRLE  QAK+EN  Y++ V   + F KMEER
Sbjct:   29 AFKKRADKRGVVYLSRVPPFMKPEKVKHLLGQFGDINRIYLVPEDKTNHKKRVAAGGNRKQSYTEGWIEFEDKKVARQVAAVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRLEIAQAKKENEAYLDKVEQSKQFEKMEER 187
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A0P1B2U2_PLAHL (Pre-rrna-processing protein esf2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2U2_PLAHL)

HSP 1 Score: 207 bits (527), Expect = 4.540e-62
Identity = 109/249 (43.78%), Postives = 149/249 (59.84%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSGETLAASGAGDAHRRIRRRFKQSRPVADVGGGGGDRGGMDPAVLQSVFGSSRGKRKAK 750
            + ++  +RGVVY++RVPPFMKP K++HL+ ++G + R+YLV ED+ + + R  AGGN   +YTEGW+EFEDKKVA+ +A  LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   +   KMEER                                S +    +   DA +++RR F Q  P +        +  +    L+ VF +SR  +K +
Sbjct:   24 FKEKTERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRMKYTEGWIEFEDKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEVYLERVEQSKQLEKMEERK-------------------------------SEKNRDQNATNDAMQQVRRTFHQKAPTSSK-----QKQSLGDDDLEKVFDASRKNKKCR 236
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: H3HB09_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB09_PHYRM)

HSP 1 Score: 207 bits (526), Expect = 7.990e-62
Identity = 95/158 (60.13%), Postives = 125/158 (79.11%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            + +   +RGVVY++RVPPFMKP K++HL+ ++G + R+YLV ED+++ + R  AGGN  ++YTEGW+EFEDKKVA+ +A  LN TLIGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   + F KM+ R
Sbjct:   29 FKEMAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKSLHKKRVSAGGNRRQKYTEGWLEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMDAR 186
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: D0MVG4_PHYIT (Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVG4_PHYIT)

HSP 1 Score: 206 bits (524), Expect = 1.500e-61
Identity = 94/158 (59.49%), Postives = 125/158 (79.11%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            + ++  +RGVVY++RVPPFMKP K++HL+ ++G + R+YLV ED+A+ + R  +GGN  ++YTEGW+EFE+KKVA+ +A  LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E  QAK+EN  Y+E V   + F KME R
Sbjct:   29 FKEKAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEAR 186
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BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A7S1TZ85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ85_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.550e-61
Identity = 94/158 (59.49%), Postives = 128/158 (81.01%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            YN ++A+RGV+YLSR+PPFMKP K++HL+  HG VTRV+L  ED++ R+AR+++GG+  KRY EGWVEF +KKVA+ +A SLNNT IGG +R+YYH+D+WN+KYL+ FKWDHLTEK+AYERRVR  ++R E +QA+RENA  ++L   G++   ME R
Sbjct:   45 YNAKMARRGVLYLSRIPPFMKPQKVRHLLAVHGEVTRVFLAAEDRSNRKARRRSGGSKAKRYDEGWVEFAEKKVAKRVALSLNNTKIGGSRRSYYHEDIWNIKYLKGFKWDHLTEKLAYERRVREHRMRAEMLQARRENAMLLDLADQGKALRAMEGR 202
[Close]
BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Match: A0A3R7J166_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J166_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.730e-61
Identity = 94/158 (59.49%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:    4 YNQRLAKRGVVYLSRVPPFMKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEFEDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEER 477
            + Q+  KRGVVY++RVPPFMKP K++HL+ ++G + R+YLV ED+ + + R  AGGN    YTEGW+EFEDKK+A+ +A  LN T IGGRKR+YYHDDMWN KYL+ FKWDHLTEK+AYE R+R QKLR+E  Q+K+EN  Y+E V   + F KME R
Sbjct:   28 FKQKAEKRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRTNYTEGWIEFEDKKIAKRVAKMLNTTQIGGRKRDYYHDDMWNFKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQSKKENEAYLERVDQSKQFEKMEAR 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10294.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDQ8_9PHAE1.880e-10782.21RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2D4BVT2_PYTIN2.740e-6665.82Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium i... [more]
K3WDP5_GLOUD4.010e-6346.56RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1FEZ1_PYTOL7.570e-6362.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y296_9STRA1.180e-6263.52RRM domain-containing protein n=1 Tax=Pythium bras... [more]
A0A0P1B2U2_PLAHL4.540e-6243.78Pre-rrna-processing protein esf2 n=1 Tax=Plasmopar... [more]
H3HB09_PHYRM7.990e-6260.13RRM domain-containing protein n=1 Tax=Phytophthora... [more]
D0MVG4_PHYIT1.500e-6159.49Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophth... [more]
A0A7S1TZ85_9STRA1.550e-6159.49Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A3R7J166_9STRA2.730e-6159.49RRM domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10294contigH-fluviatilis_contig10294:2..2572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue8.9e-45
Seed eggNOG ortholog65071.PYU1_T003086
Preferred nameABT1
KEGG koko:K14785
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001671,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030234,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0032991,GO:0034462,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048513,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051704,GO:0051707,GO:0060255,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097659,GO:0098542,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Pre-rRNA-processing protein ESF2. Source PGD
EggNOG OGs1MBIF@121069,KOG3152@1,KOG3152@2759
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_002630.1
Exons4
Model size1056
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10294.613.1prot_H-fluviatilis_contig10294.613.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10294 62..2287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.4789336-UTR-H-fluviatilis_contig10294:1..611622929071.4789336-UTR-H-fluviatilis_contig10294:1..61Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10294 2..61 +
1691135171.8292832-UTR-H-fluviatilis_contig10294:1..611691135171.8292832-UTR-H-fluviatilis_contig10294:1..61Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10294 2..61 +
1622929071.5461214-UTR-H-fluviatilis_contig10294:2287..25721622929071.5461214-UTR-H-fluviatilis_contig10294:2287..2572Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10294 2288..2572 +
1691135171.8760307-UTR-H-fluviatilis_contig10294:2287..25721691135171.8760307-UTR-H-fluviatilis_contig10294:2287..2572Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10294 2288..2572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.490487-CDS-H-fluviatilis_contig10294:61..1151622929071.490487-CDS-H-fluviatilis_contig10294:61..115Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 62..115 +
1691135171.839671-CDS-H-fluviatilis_contig10294:61..1151691135171.839671-CDS-H-fluviatilis_contig10294:61..115Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 62..115 +
1622929071.5072818-CDS-H-fluviatilis_contig10294:706..8241622929071.5072818-CDS-H-fluviatilis_contig10294:706..824Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 707..824 +
1691135171.850587-CDS-H-fluviatilis_contig10294:706..8241691135171.850587-CDS-H-fluviatilis_contig10294:706..824Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 707..824 +
1622929071.5213385-CDS-H-fluviatilis_contig10294:1274..14551622929071.5213385-CDS-H-fluviatilis_contig10294:1274..1455Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 1275..1455 +
1691135171.8584602-CDS-H-fluviatilis_contig10294:1274..14551691135171.8584602-CDS-H-fluviatilis_contig10294:1274..1455Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 1275..1455 +
1622929071.533238-CDS-H-fluviatilis_contig10294:1929..22871622929071.533238-CDS-H-fluviatilis_contig10294:1929..2287Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 1930..2287 +
1691135171.8662028-CDS-H-fluviatilis_contig10294:1929..22871691135171.8662028-CDS-H-fluviatilis_contig10294:1929..2287Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10294 1930..2287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10294.613.1

>prot_H-fluviatilis_contig10294.613.1 ID=prot_H-fluviatilis_contig10294.613.1|Name=mRNA_H-fluviatilis_contig10294.613.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=237bp
MKPAKIKHLMEQHGVVTRVYLVEEDQAIRRARKKAGGNSGKRYTEGWVEF
EDKKVARAIADSLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAY
ERRVRAQKLRLETMQAKRENARYVELVVSGRSFAKMEERKRKRREDDTDT
ASSAAKPTGAASTSGGENAGGSGETLAASGAGDAHRRIRRRFKQSRPVAD
VGGGGGDRGGMDPAVLQSVFGSSRGKRKAKGSTAVQ*
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mRNA from alignment at H-fluviatilis_contig10294:2..2572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10294.613.1 ID=mRNA_H-fluviatilis_contig10294.613.1|Name=mRNA_H-fluviatilis_contig10294.613.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2571bp|location=Sequence derived from alignment at H-fluviatilis_contig10294:2..2572+ (Heribaudiella fluviatilis SAG_13_90)
AGCTACAACCAGCGCCTGGCGAAACGCGGTGTGGTTTACTTGAGCCGGGT
TCCTCCGTTCATGAAGCCTGCCAAGATCAAACATCTCATGGAACAGCACG
GAGTGGTTACTCGGGTAAGTATGGGCCGCAGTAGTACAGGAAGGTGTGGT
AGTCGTGCCGATGAAAGGTTGTGGGCTGCTGAAATTTCTGTCGTCCCGTT
AAATTCAACACGGTTCAGTACTATGGTGTTTTTGGTACCTATGTGAACAT
GTGTAATACCTGAGAAGCATGGTTGCCACGACGTGAAATTACACCTTGAA
AGAAGTCAGACACCAGCATGCCTTTCCATAGCAAGCAAGTACTGGTATGA
TACAGTACGCAAGTTGTTGATAGCGAATAAGTACTGGTATGATACAGTAC
GTAAGTTGTTGATAGCAGACAAGTACTGGTATGATACAGACGCAAGTTTG
TTGAGGCAGCCATTCCAGAAGGTCCGCTGCTGTGTCTCACTGGCGTCGTT
GGTTCGACGCGACTGCTGTTCTGTACCAAATTTTTAAGCAACCAACAACC
CACGCACACAAAATACATACGCGCTAAGGGGGCGTGTGGTGATCTTTTAC
CTCCATCATTCTATTTAACGAGATGCGCGAGGATTACAGTCGTCGTTGCC
CGGTGATTTCACCAGTAGTGCTCACGGTTGAGTTTCGGGATTCGTTGATC
ACAAGGTCTATCTTGTAGAGGAGGACCAGGCCATTCGTCGAGCTAGGAAA
AAAGCAGGCGGGAACTCGGGCAAGAGATACACGGAAGGATGGGTGGAGTT
TGAGGATAAGAAGGTCGCGCGAGGTGAGATACTGGCAATGTGGGAGAGCG
CGGGCAACATTCCATGTGAAATTCTGCAAACCAACAGCAGTAGCAGCATA
TTTGTTTGGTATGGTACCCGGTATGACGCCTACATTATTTGTGATGTTTT
TTCGCAGGTCTACCTGCACATCATGTGAAAAACGCAATTGAAGTTCGTGA
AGGCAGGAGACAACCGGTACGCAAATACATGCGGTGGGGTGGTAGATTGA
CCGTCCTCAATCTCGAGGCCTACCCATTGAACACAACTTGTGTGACACTG
TCTGTCTGGGCCATCGAATATCGCAAGAGGGTGCACCTAGCCTACGCCTC
AGCCGTGATAGTGGAAAGCATTTGGCTCAGCCGCTTTTGTGACGGTAACA
CTACGCTGTCTTAGGTACTTTTGTTTTCCCCGCTAAGTACATTTGTCGTT
TCGTCCGTTTCCCCACTTGACAGCTATTGCCGACAGTTTAAACAACACGT
TGATCGGGGGAAGGAAACGAAATTATTACCACGACGACATGTGGAACCTC
AAGTACCTGAGAAAGTTCAAGTGGGATCATCTAACGGAAAAAGTTGCGTA
CGAACGGAGAGTGCGAGCGCAAAAGCTCCGGCTGGAGACAATGCAGGCGA
AGAGGTAAGGAGGAAGAAACAGATTCGTACTGTTCACTTAATTTTGTTAT
TCGAGTTCGCCACTTTTCTCTTCATCGCTTGCGACGCAATTTTAGCCTTC
ATCACTTACAGCCGGCTTACAGGGATGCACTGCTCAGCACGCTTTGGCGG
ACACGCTCACGAGGACTTACTTCATTGTTATAATACCATCACGACGATTG
CACACCGAGAGACCGGCCGACACCGTGTCCTTTTCGAGATTGCCTACACG
TTACGCCTGGTTCGACATGTTTTTTTGGCTTTTATTCATTATTCCCGACA
ACTGCGATGGAGCACGTGTAAGAAGCAACGATGTCAACAGCATCCGTAAC
AAGCAAAGGAAACCTGTTGCGAAGGGATGCAACCTAGGCTCGATCGAGTT
TCAAGCGGCCGGCATGCGGACTCTTGATCTCGAGTACTTTTTCAAATACA
TTGTTTCGTTTGGTACCGGAATTCACAGGGAAAACGCACGCTACGTCGAG
CTTGTAGTGAGCGGACGATCGTTCGCCAAGATGGAAGAGAGAAAAAGGAA
GCGACGAGAGGACGACACCGACACCGCGTCTTCAGCTGCAAAACCTACAG
GTGCAGCTTCAACAAGCGGAGGTGAAAACGCGGGTGGTTCCGGAGAGACG
TTGGCTGCGTCAGGAGCCGGCGATGCGCACCGACGGATACGGCGTCGATT
CAAGCAATCCAGACCTGTCGCGGATGTTGGAGGCGGGGGAGGCGATCGAG
GCGGCATGGACCCTGCTGTATTACAGTCAGTATTTGGTAGCAGCCGCGGC
AAGAGGAAGGCGAAGGGTAGTACAGCAGTACAGTAGCTTGTGTTACATGT
CTTCATTTACCGGGCAAACTAGATAGGCACATTTGTCGTGCTGCTCACGC
ACGTGACCTTGTTTGATCCCGGCAGCTTGTGTTGGAGGCGCCGTTACGCG
CTATGCTTTCATGCAAAAACAGGATCCCTTGAGATGACTGTGATTGCGTG
GCTGACTGGCATCGCATGCAGCTCCTTTACCTCGCAATAGGGCTTGGCAA
CGTCTCCATTCATGCCGTGCATGCAGTACCAATACACGACAAAATTGTCG
AGCATCTGGGGATCAGCCGCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10294:2..2572+

>mRNA_H-fluviatilis_contig10294.613.1 ID=mRNA_H-fluviatilis_contig10294.613.1|Name=mRNA_H-fluviatilis_contig10294.613.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1422bp|location=Sequence derived from alignment at H-fluviatilis_contig10294:2..2572+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGCCTGCCAAGATCAAACATCTCATGGAACAGCACGGAGTGGTTAC
TCGGATGAAGCCTGCCAAGATCAAACATCTCATGGAACAGCACGGAGTGG
TTACTCGGGTCTATCTTGTAGAGGAGGACCAGGCCATTCGTCGAGCTAGG
AAAAAAGCAGGCGGGAACTCGGGCAAGAGATACACGGAAGGATGGGTGGA
GTTTGAGGATAAGAAGGTCGCGCGAGGTCTATCTTGTAGAGGAGGACCAG
GCCATTCGTCGAGCTAGGAAAAAAGCAGGCGGGAACTCGGGCAAGAGATA
CACGGAAGGATGGGTGGAGTTTGAGGATAAGAAGGTCGCGCGAGCTATTG
CCGACAGTTTAAACAACACGTTGATCGGGGGAAGGAAACGAAATTATTAC
CACGACGACATGTGGAACCTCAAGTACCTGAGAAAGTTCAAGTGGGATCA
TCTAACGGAAAAAGTTGCGTACGAACGGAGAGTGCGAGCGCAAAAGCTCC
GGCTGGAGACAATGCAGGCGAAGAGCTATTGCCGACAGTTTAAACAACAC
GTTGATCGGGGGAAGGAAACGAAATTATTACCACGACGACATGTGGAACC
TCAAGTACCTGAGAAAGTTCAAGTGGGATCATCTAACGGAAAAAGTTGCG
TACGAACGGAGAGTGCGAGCGCAAAAGCTCCGGCTGGAGACAATGCAGGC
GAAGAGGGAAAACGCACGCTACGTCGAGCTTGTAGTGAGCGGACGATCGT
TCGCCAAGATGGAAGAGAGAAAAAGGAAGCGACGAGAGGACGACACCGAC
ACCGCGTCTTCAGCTGCAAAACCTACAGGTGCAGCTTCAACAAGCGGAGG
TGAAAACGCGGGTGGTTCCGGAGAGACGTTGGCTGCGTCAGGAGCCGGCG
ATGCGCACCGACGGATACGGCGTCGATTCAAGCAATCCAGACCTGTCGCG
GATGTTGGAGGCGGGGGAGGCGATCGAGGCGGCATGGACCCTGCTGTATT
ACAGTCAGTATTTGGTAGCAGCCGCGGCAAGAGGAAGGCGAAGGGTAGTA
CAGCAGTACAGTAGGGAAAACGCACGCTACGTCGAGCTTGTAGTGAGCGG
ACGATCGTTCGCCAAGATGGAAGAGAGAAAAAGGAAGCGACGAGAGGACG
ACACCGACACCGCGTCTTCAGCTGCAAAACCTACAGGTGCAGCTTCAACA
AGCGGAGGTGAAAACGCGGGTGGTTCCGGAGAGACGTTGGCTGCGTCAGG
AGCCGGCGATGCGCACCGACGGATACGGCGTCGATTCAAGCAATCCAGAC
CTGTCGCGGATGTTGGAGGCGGGGGAGGCGATCGAGGCGGCATGGACCCT
GCTGTATTACAGTCAGTATTTGGTAGCAGCCGCGGCAAGAGGAAGGCGAA
GGGTAGTACAGCAGTACAGTAG
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