mRNA_H-fluviatilis_contig102927.610.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102927.610.1
Unique NamemRNA_H-fluviatilis_contig102927.610.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A2H3BPI3_9AGAR (Eukaryotic translation initiation factor 3 subunit G n=4 Tax=Physalacriaceae TaxID=862241 RepID=A0A2H3BPI3_9AGAR)

HSP 1 Score: 66.2 bits (160), Expect = 3.350e-11
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS + G    GES   +S GG   ++ T +RVTN+SEDT E DLR+LF  FGRI R
Sbjct:  178 GKYVPPSMRAGASRPGESMRGLSSGGNRDDYPT-LRVTNVSEDTQENDLRELFQVFGRIMR 237
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A164UET4_9AGAM (Eukaryotic translation initiation factor 3 subunit G n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164UET4_9AGAM)

HSP 1 Score: 63.9 bits (154), Expect = 2.310e-10
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    7 MMGLGVGGAGKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            M G+G    GKYVPPS + G G RG +G  M   G   +  T +RVTN+SEDTT+ DLRDLF  FGR+ R
Sbjct:  169 MPGIGATAGGKYVPPSMRAGAG-RG-AGESMYRSGNRDDLPT-LRVTNVSEDTTDNDLRDLFGTFGRVAR 235
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: UPI000440D94D (translation initiation factor 3 RNA-binding subunit n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440D94D)

HSP 1 Score: 63.9 bits (154), Expect = 2.430e-10
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   22 VGGAGKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
             GG  KYVPPS + G    GES     G G   +  T +RVTNISEDT E DLRDLF  FGR+ R
Sbjct:  181 AGGPSKYVPPSMRAGARGPGESMGRPGGAGNRDDLPT-LRVTNISEDTQENDLRDLFGTFGRVAR 244
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A4V3XBV0_9AGAM (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4V3XBV0_9AGAM)

HSP 1 Score: 63.5 bits (153), Expect = 3.140e-10
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGAR-GESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS + G GAR GES    SGG    +    +RVTN+SEDTT+ DLRDLFS FGR+ R
Sbjct:  176 GKYVPPSMRSGAGARMGESMGRGSGGR---DDLPTLRVTNVSEDTTDQDLRDLFSNFGRVVR 234
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A166B9Q1_EXIGL (Eukaryotic translation initiation factor 3 subunit G n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A166B9Q1_EXIGL)

HSP 1 Score: 63.5 bits (153), Expect = 3.170e-10
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS + G G RG       GGG   +  T +RVTN+SEDT++ DLRDLFS FGR+ R
Sbjct:  174 GKYVPPSMRAGAG-RGAGESMFRGGGNRDDLPT-LRVTNVSEDTSDNDLRDLFSRFGRVAR 232
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A0C9VE82_9AGAM (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Hydnomerulius pinastri MD-312 TaxID=994086 RepID=A0A0C9VE82_9AGAM)

HSP 1 Score: 63.5 bits (153), Expect = 3.190e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS + G    GES   + G G+  +  T +RVTNISE+T E DLR+LF AFGR+ R
Sbjct:  175 GKYVPPSMRAGGRGPGESMARLGGAGSRDDLPT-LRVTNISEETQENDLRELFGAFGRVAR 234
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A0D7BAB7_9AGAR (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BAB7_9AGAR)

HSP 1 Score: 62.8 bits (151), Expect = 6.100e-10
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS+++G  ARG +G  M G G   +    +RVTN+SEDT E DLR+LF+ FGR+ R
Sbjct:  177 GKYVPPSQRLG--ARG-AGEAMRGAGNNRDDLPTLRVTNVSEDTQENDLRELFTRFGRVVR 234
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A286ULF4_9AGAM (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286ULF4_9AGAM)

HSP 1 Score: 62.8 bits (151), Expect = 6.270e-10
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   31 AGKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            +GKYVPPS + G  +R  SG  M   G   +    +RVTN+SEDTT+ DLRDLFS FGR+ R
Sbjct:  180 SGKYVPPSMRAGAASR--SGEAMGRPGMNRDDLPTLRVTNVSEDTTDQDLRDLFSNFGRVVR 239
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BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: S7Q1L1_GLOTA (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7Q1L1_GLOTA)

HSP 1 Score: 62.8 bits (151), Expect = 6.310e-10
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            GKYVPPS       RG  GP    GGT  +    +RVTNISEDT E DLR+LF AFGR+ R
Sbjct:  188 GKYVPPSM------RGARGPGERMGGTSRDDLPTLRVTNISEDTQENDLRELFGAFGRVAR 242
[Close]
BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Match: A0A0U9I6D3_KLENI (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9I6D3_KLENI)

HSP 1 Score: 62.8 bits (151), Expect = 6.470e-10
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   34 GKYVPPSRKVGFGARGESGPEMSGG-GTMGEHHTKIRVTNISEDTTEGDLRDLFSAFGRINR 216
            G YVPPSR+ G  AR   G EM GG G  G     IRVTN+SEDT E DL++LF  FG I+R
Sbjct:  186 GTYVPPSRREGASAR--EGSEMGGGRGGRGRDDNSIRVTNLSEDTREEDLQELFRPFGPISR 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102927.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H3BPI3_9AGAR3.350e-1155.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A164UET4_9AGAM2.310e-1052.86Eukaryotic translation initiation factor 3 subunit... [more]
UPI000440D94D2.430e-1053.85translation initiation factor 3 RNA-binding subuni... [more]
A0A4V3XBV0_9AGAM3.140e-1059.68Eukaryotic translation initiation factor 3 subunit... [more]
A0A166B9Q1_EXIGL3.170e-1055.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A0C9VE82_9AGAM3.190e-1054.10Eukaryotic translation initiation factor 3 subunit... [more]
A0A0D7BAB7_9AGAR6.100e-1054.10Eukaryotic translation initiation factor 3 subunit... [more]
A0A286ULF4_9AGAM6.270e-1053.23Eukaryotic translation initiation factor 3 subunit... [more]
S7Q1L1_GLOTA6.310e-1055.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A0U9I6D3_KLENI6.470e-1056.45Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102927contigH-fluviatilis_contig102927:334..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog40492.XP_007303305.1
Preferred nameTIF35
KEGG koko:K03248,ko:K20304
KEGG Pathwayko03013,map03013
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA
EggNOG OGs227S0@155619,38H4F@33154,3H1WN@355688,3NX70@4751,3UZSN@5204,KOG0122@1,KOG0122@2759
COG Functional cat.J
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.1772246-UTR-H-fluviatilis_contig102927:333..3391622929071.1772246-UTR-H-fluviatilis_contig102927:333..339Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102927 334..339 +
1691135171.7285836-UTR-H-fluviatilis_contig102927:333..3391691135171.7285836-UTR-H-fluviatilis_contig102927:333..339Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102927 334..339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.1961105-CDS-H-fluviatilis_contig102927:339..5491622929071.1961105-CDS-H-fluviatilis_contig102927:339..549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102927 340..549 +
1691135171.7414296-CDS-H-fluviatilis_contig102927:339..5491691135171.7414296-CDS-H-fluviatilis_contig102927:339..549Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102927 340..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102927.610.1prot_H-fluviatilis_contig102927.610.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102927 340..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102927.610.1

>prot_H-fluviatilis_contig102927.610.1 ID=prot_H-fluviatilis_contig102927.610.1|Name=mRNA_H-fluviatilis_contig102927.610.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=70bp
MMGLGVGGAGKYVPPSRKVGFGARGESGPEMSGGGTMGEHHTKIRVTNIS
EDTTEGDLRDLFSAFGRINR
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mRNA from alignment at H-fluviatilis_contig102927:334..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102927.610.1 ID=mRNA_H-fluviatilis_contig102927.610.1|Name=mRNA_H-fluviatilis_contig102927.610.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=216bp|location=Sequence derived from alignment at H-fluviatilis_contig102927:334..549+ (Heribaudiella fluviatilis SAG_13_90)
GGTGGTATGATGGGCCTTGGCGTGGGCGGTGCCGGTAAATACGTGCCTCC
AAGCCGAAAGGTCGGCTTCGGGGCACGGGGCGAATCTGGACCTGAGATGT
CAGGGGGGGGCACCATGGGAGAGCACCACACCAAAATACGTGTCACTAAC
ATCAGCGAGGACACCACGGAGGGCGACCTTCGAGATCTTTTCAGTGCCTT
TGGAAGGATTAACAGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102927:334..549+

>mRNA_H-fluviatilis_contig102927.610.1 ID=mRNA_H-fluviatilis_contig102927.610.1|Name=mRNA_H-fluviatilis_contig102927.610.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=420bp|location=Sequence derived from alignment at H-fluviatilis_contig102927:334..549+ (Heribaudiella fluviatilis SAG_13_90)
ATGATGGGCCTTGGCGTGGGCGGTGCCGGTAAATACGTGCCTCCAAGCCG
AAAGGTCGGCTTCGGGGCACGGGGCGAATCTGGACCTGAGATGTCAGGGG
GGGGCACCATGGGAGAGCACCACACCAAAATACGTGTCACTAACATCAGC
GAGGACACCACGGAGGGCGACCTTCGAGATCTTTTCAGTGCCTTTGGAAG
GATTAACAGGATGATGGGCCTTGGCGTGGGCGGTGCCGGTAAATACGTGC
CTCCAAGCCGAAAGGTCGGCTTCGGGGCACGGGGCGAATCTGGACCTGAG
ATGTCAGGGGGGGGCACCATGGGAGAGCACCACACCAAAATACGTGTCAC
TAACATCAGCGAGGACACCACGGAGGGCGACCTTCGAGATCTTTTCAGTG
CCTTTGGAAGGATTAACAGG
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