mRNA_H-fluviatilis_contig102894.604.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102894.604.1
Unique NamemRNA_H-fluviatilis_contig102894.604.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102894.604.1 vs. uniprot
Match: F2U0W2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0W2_SALR5)

HSP 1 Score: 64.3 bits (155), Expect = 2.460e-9
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 1 
Query:   28 VRQAILRVHDPMTPAPVRHQASQLCESVKANPKLALGFGFQLLAAADPS--EPTATYMRHFGFHCLESIVS-KWDALVDEQKLTLKQRSIELLAV--SFPQI----FLKKKVASALVSDIAKREWPQRY 387
            V  A++ + DP  PA  +H+A +   + K   + A  +G  + +  + S        +RHFG   LE  V  +WD+   EQK  +KQ  +  L +  +FP +    F+ +K+AS LVS++A REWPQR+
Sbjct:    9 VANAVMVMQDPSAPAETKHEAFEYFNAFKDQAQDAPAYGLYMASIQEQSMIADHNDLIRHFGLQLLEHCVQHRWDSYAQEQKEEMKQALLHNLIMRGTFPLLQERPFIMEKIAS-LVSEVAIREWPQRW 136
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BLAST of mRNA_H-fluviatilis_contig102894.604.1 vs. uniprot
Match: A0A7S1ITD1_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ITD1_9EUGL)

HSP 1 Score: 52.8 bits (125), Expect = 1.410e-5
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  109 VKANPKLALGFGFQLLAAADPSEPTATYMRHFGFHCLESIVSK-WDALVDEQKLTLKQRSIELLAVSFPQIF-LKKKVASALVSDIAKREWPQRY 387
            V+  P LA  FGF  + A   SE    Y++H G+H LE ++   W+ +  E+K  LK   + LL  +   +  L ++  + L+S++AKREWPQR+
Sbjct:    2 VQLGPALA-EFGFYYVEAHSQSE----YVQHMGYHFLEHVICHHWNVMPTEEKSKLKTMIVSLLQKAPDGLLSLYQQKIAQLLSELAKREWPQRW 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102894.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F2U0W2_SALR52.460e-933.33Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S1ITD1_9EUGL1.410e-535.79Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102894contigH-fluviatilis_contig102894:61..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog227086.JGI_V11_72002
KEGG koko:K14289,ko:K14290
KEGG TC1.I.1
KEGG Pathwayko03008,ko03013,ko04013,ko05164,ko05166,ko05169,map03008,map03013,map04013,map05164,map05166,map05169
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.4933705-CDS-H-fluviatilis_contig102894:60..1321622929070.4933705-CDS-H-fluviatilis_contig102894:60..132Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102894 61..132 -
1691135171.5290556-CDS-H-fluviatilis_contig102894:60..1321691135171.5290556-CDS-H-fluviatilis_contig102894:60..132Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102894 61..132 -
1622929070.5089076-CDS-H-fluviatilis_contig102894:154..4901622929070.5089076-CDS-H-fluviatilis_contig102894:154..490Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102894 155..490 -
1691135171.5388823-CDS-H-fluviatilis_contig102894:154..4901691135171.5388823-CDS-H-fluviatilis_contig102894:154..490Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102894 155..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102894.604.1prot_H-fluviatilis_contig102894.604.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102894 61..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102894.604.1

>prot_H-fluviatilis_contig102894.604.1 ID=prot_H-fluviatilis_contig102894.604.1|Name=mRNA_H-fluviatilis_contig102894.604.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=136bp
MSQGPDPSEVRQAILRVHDPMTPAPVRHQASQLCESVKANPKLALGFGFQ
LLAAADPSEPTATYMRHFGFHCLESIVSKWDALVDEQKLTLKQRSIELLA
VSFPQIFLKKKVASALVSDIAKREWPQRYFKGLNQ*
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mRNA from alignment at H-fluviatilis_contig102894:61..490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102894.604.1 ID=mRNA_H-fluviatilis_contig102894.604.1|Name=mRNA_H-fluviatilis_contig102894.604.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=430bp|location=Sequence derived from alignment at H-fluviatilis_contig102894:61..490- (Heribaudiella fluviatilis SAG_13_90)
ATGAGTCAGGGACCGGACCCATCGGAAGTGCGGCAAGCGATTCTGAGAGT
GCATGATCCCATGACTCCGGCCCCAGTACGGCATCAAGCATCGCAGTTGT
GTGAATCCGTCAAAGCAAACCCTAAACTTGCGTTGGGGTTTGGCTTTCAG
CTTTTGGCGGCCGCTGACCCTTCAGAACCAACGGCCACATACATGCGCCA
CTTCGGATTTCATTGTTTAGAAAGTATCGTCAGCAAGTGGGATGCACTAG
TCGACGAGCAGAAACTCACACTGAAGCAGAGGTCGATAGAACTGTTAGCA
GTATCGTTTCCACAGATCTTCCTCAAGAAAAAGGTAGTCGAAAATGGATT
ACTTTTAGGCTTCAGCGCTGGTTTCTGACATTGCCAAGCGCGAGTGGCCG
CAGCGGTATTTCAAGGGGCTCAATCAATGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102894:61..490-

>mRNA_H-fluviatilis_contig102894.604.1 ID=mRNA_H-fluviatilis_contig102894.604.1|Name=mRNA_H-fluviatilis_contig102894.604.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=816bp|location=Sequence derived from alignment at H-fluviatilis_contig102894:61..490- (Heribaudiella fluviatilis SAG_13_90)
ATGAGTCAGGGACCGGACCCATCGGAAGTGCGGCAAGCGATTCTGAGAGT
GCATGATCCCATGACTCCGGCCCCAGTACGGCATCAAGCATCGCAGTTGT
GTGAATCCGTCAAAGCAAACCCTAAACTTGCGTTGGGGTTTGGCTTTCAG
CTTTTGGCGGCCGCTGACCCTTCAGAACCAACGGCCACATACATGCGCCA
CTTCGGATTTCATTGTTTAGAAAGTATCGTCAGCAAGTGGGATGCACTAG
TCGACGAGCAGAAACTCACACTGAAGCAGAGGTCGATAGAACTGTTAGCA
GTATCGTTTCCACAGATCTTCCTCAAGAAAAAGGTAATGAGTCAGGGACC
GGACCCATCGGAAGTGCGGCAAGCGATTCTGAGAGTGCATGATCCCATGA
CTCCGGCCCCAGTACGGCATCAAGCATCGCAGTTGTGTGAATCCGTCAAA
GCAAACCCTAAACTTGCGTTGGGGTTTGGCTTTCAGCTTTTGGCGGCCGC
TGACCCTTCAGAACCAACGGCCACATACATGCGCCACTTCGGATTTCATT
GTTTAGAAAGTATCGTCAGCAAGTGGGATGCACTAGTCGACGAGCAGAAA
CTCACACTGAAGCAGAGGTCGATAGAACTGTTAGCAGTATCGTTTCCACA
GATCTTCCTCAAGAAAAAGGTAGCTTCAGCGCTGGTTTCTGACATTGCCA
AGCGCGAGTGGCCGCAGCGGTATTTCAAGGGGCTCAATCAATGAGCTTCA
GCGCTGGTTTCTGACATTGCCAAGCGCGAGTGGCCGCAGCGGTATTTCAA
GGGGCTCAATCAATGA
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