mRNA_H-fluviatilis_contig102882.601.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102882.601.1
Unique NamemRNA_H-fluviatilis_contig102882.601.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A6H5LL89_9PHAE (Peptidase_M23 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL89_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.680e-36
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            VLA+R GVV    DHF EGG R+ L PR+N+VALRH DGTYTRY+HLM GG LV+VGQEV AG+ IALSGNTG++  PHLHFDAV +LPQE+
Sbjct:   35 VLASRAGVVAAYCDHFGEGGLRQGLRPRANYVALRHRDGTYTRYVHLMRGGVLVQVGQEVAAGEVIALSGNTGYSPTPHLHFDAVKVLPQET 126          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: UPI001E6149D6 (M23 family metallopeptidase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001E6149D6)

HSP 1 Score: 114 bits (284), Expect = 4.370e-30
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLP 267
            VLAAR+GVVV  RD FREGG  E L  R+N + +RH DGT   Y+HLM GGA VRVGQ VR GQ I LSGNTG+++ PHLHF+   + P
Sbjct:   56 VLAAREGVVVEVRDTFREGGADEALRDRANRIKIRHDDGTIGAYVHLMRGGARVRVGQRVRRGQVIGLSGNTGYSTGPHLHFEVYKIEP 144          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A8J2WE38_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE38_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.500e-30
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            VLAAR G +    DHFR GG +  L PR+NFVA+RHSDG+Y RY HL   G+L +VG+ V  GQ IA SGNTG+T  PHLHFD V+LLP+E+
Sbjct:   88 VLAARGGTIAAVVDHFRGGGAKAHLAPRANFVAVRHSDGSYARYYHLKEKGSLYKVGERVGRGQQIAWSGNTGYTGGPHLHFDLVNLLPEET 179          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A7S2C303_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C303_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.130e-29
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            ++AAR GVV     HF EGG   +L PR+NFVA++HSDGTY RY HL   G  V  G  V+AGQ + LSGNTGF+S PHLHFD V +LP+++
Sbjct:   79 LVAARPGVVAATAGHFNEGGLEGKLRPRANFVAVQHSDGTYARYFHLRRQGVTVEAGDTVKAGQQVGLSGNTGFSSTPHLHFDVVDMLPEDT 170          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A7S2HAX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HAX5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.720e-29
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    7 AARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            AAR GVV     HF +GG +    PR+NF+A++H+DGTY RY HL   G   +VG +V AGQ +ALSGNTGF+S PHLHFD  ++LP+++
Sbjct:    1 AARTGVVAAAVAHFDKGGLKNDFRPRANFIAIQHADGTYARYFHLQKNGCSAKVGDQVIAGQQVALSGNTGFSSCPHLHFDVTNMLPEDT 90          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A7S3K4G7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4G7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.560e-28
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            VLAAR GVV     HF  GG R  L PR+N++A+RH DG+Y RY HL   G+ ++VG  V+ GQ IALSGNTG+T  PHLHFD V++LP+E+
Sbjct:   70 VLAARGGVVAAVVTHFSGGGARAHLAPRANYIAIRHDDGSYGRYYHLRKDGSKLKVGDRVKRGQVIALSGNTGYTGGPHLHFDVVNVLPEET 161          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: UPI001389E852 (M23 family metallopeptidase n=1 Tax=Pseudoxanthomonas taiwanensis TaxID=176598 RepID=UPI001389E852)

HSP 1 Score: 105 bits (261), Expect = 1.510e-25
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHF 246
            VLAAR+GVV+     +REGGP  RL  R+NFV + H+DG+   Y HL PGG LVR GQ VR G+ I LSGNTG+++ PHLHF
Sbjct:  169 VLAAREGVVMQTEAGYREGGPEPRLRGRANFVRILHADGSMATYAHLQPGGVLVRPGQHVRQGERIGLSGNTGYSTAPHLHF 250          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: R1ECT1_EMIHU (Peptidase_M23 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECT1_EMIHU)

HSP 1 Score: 105 bits (262), Expect = 2.870e-25
Identity = 51/92 (55.43%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            VLAAR GVVV   D FR G P+    P +N V LRH+DG Y+RY HL  G     VG  V  GQPIA SGNTGF+S PHLHFD     P E+
Sbjct:   80 VLAARAGVVVEACDVFRAGAPKPEYRPLANHVVLRHADGLYSRYFHLKQGSLRTSVGAAVSVGQPIAASGNTGFSSGPHLHFDVTDSTPTET 171          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A2V5PVL6_9BACT (Peptidase_M23 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5PVL6_9BACT)

HSP 1 Score: 103 bits (258), Expect = 4.960e-25
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLL 264
            V AAR+G VV  R     GGP  +  P +N+V ++H+DGT+  Y+HL P GALV++G EV+ GQPI LSG TGFTS PHLHF     +
Sbjct:  176 VCAAREGRVVGVRQDSTVGGPDRKFRPFANYVIIKHADGTFADYVHLKPEGALVKIGDEVKVGQPIGLSGQTGFTSAPHLHFSVFQAI 263          
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Match: A0A7S4BTM6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BTM6_CHRCT)

HSP 1 Score: 105 bits (262), Expect = 1.230e-24
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPGGALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQES 276
            V+AAR+G V    D F EGG R+ L  R+N V +RH+DG Y+RY HL P  ALV  GQ V AGQ IA SGNTGF+S PHLHFD V +   E+
Sbjct:   72 VVAAREGEVAAVCDCFTEGGLRKELKARANHVVIRHADGLYSRYYHLQPSSALVCKGQRVTAGQRIAASGNTGFSSGPHLHFDVVDVFNLET 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102882.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL89_9PHAE5.680e-3669.57Peptidase_M23 domain-containing protein n=1 Tax=Ec... [more]
UPI001E6149D64.370e-3060.67M23 family metallopeptidase n=1 Tax=Rhodocaloribac... [more]
A0A8J2WE38_9STRA4.500e-3059.78Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2C303_9STRA3.130e-2956.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HAX5_9STRA4.720e-2953.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3K4G7_9STRA2.560e-2856.52Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI001389E8521.510e-2558.54M23 family metallopeptidase n=1 Tax=Pseudoxanthomo... [more]
R1ECT1_EMIHU2.870e-2555.43Peptidase_M23 domain-containing protein n=1 Tax=Em... [more]
A0A2V5PVL6_9BACT4.960e-2552.27Peptidase_M23 domain-containing protein n=1 Tax=Ve... [more]
A0A7S4BTM6_CHRCT1.230e-2456.52Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102882contigH-fluviatilis_contig102882:104..788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue5.5e-22
Seed eggNOG ortholog44056.XP_009034366.1
EggNOG free text desc.Peptidase family M23
EggNOG OGs2E5ZJ@1,2SCR8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.9261055-CDS-H-fluviatilis_contig102882:103..2111622929069.9261055-CDS-H-fluviatilis_contig102882:103..211Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102882 104..211 -
1691135171.3568082-CDS-H-fluviatilis_contig102882:103..2111691135171.3568082-CDS-H-fluviatilis_contig102882:103..211Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102882 104..211 -
1622929069.946961-CDS-H-fluviatilis_contig102882:614..7881622929069.946961-CDS-H-fluviatilis_contig102882:614..788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102882 615..788 -
1691135171.366306-CDS-H-fluviatilis_contig102882:614..7881691135171.366306-CDS-H-fluviatilis_contig102882:614..788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102882 615..788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102882.601.1prot_H-fluviatilis_contig102882.601.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102882 104..788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102882.601.1

>prot_H-fluviatilis_contig102882.601.1 ID=prot_H-fluviatilis_contig102882.601.1|Name=mRNA_H-fluviatilis_contig102882.601.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=94bp
VLAARDGVVVHERDHFREGGPRERLLPRSNFVALRHSDGTYTRYIHLMPG
GALVRVGQEVRAGQPIALSGNTGFTSEPHLHFDAVSLLPQESE*
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mRNA from alignment at H-fluviatilis_contig102882:104..788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102882.601.1 ID=mRNA_H-fluviatilis_contig102882.601.1|Name=mRNA_H-fluviatilis_contig102882.601.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=685bp|location=Sequence derived from alignment at H-fluviatilis_contig102882:104..788- (Heribaudiella fluviatilis SAG_13_90)
GTGTTGGCGGCTCGAGACGGCGTCGTGGTCCATGAGCGTGATCACTTCCG CGAGGGTGGTCCACGAGAACGGCTCCTTCCACGGTCGAACTTCGTTGCCC TTCGCCATTCCGACGGCACCTACACCCGGTACATACACCTCATGCCGGGT GGTGCGTTGGTGCGAGTTGGACAGGTGTGGAGCGCGATGAGCATTTGATG CTAGAGCACCGTAACATTAAGGATAGTAGGCGAATGTGTGCGCAATACCG ACCGACCGATCGTCTCGAAATCGGTCTGTTGGGAAAGCTGCTATCATGAA AATTTCCGACAAACTTTGGTGAGCGCCTGCGGAGAACCGAGACCGATTTT AGTTTCCCAAACTTGGAGGGTTCCAAACTTTTTGCGTCAATACATACGTT AGACACGGGCCAACCCGAAAACCTCTCGCGCTAGTCTCTTATACGGTGAG TTTTACGCGTCGTCAATGTTCATGGCGAACAATTCCCCCCGGGTGCAGCA CTTGCGCAGAATTACGTCTCAAAAGAAGACCCTTCCCGTGCCAAAGCTGC TTGCGCTTCACGCCTTGTACGTAACAGGAGGTCAGAGCTGGCCAACCCAT CGCGCTCAGCGGCAACACGGGGTTTACCTCGGAGCCCCATCTCCATTTTG ACGCGGTCAGCCTTCTTCCCCAAGAGAGTGAGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102882:104..788-

>mRNA_H-fluviatilis_contig102882.601.1 ID=mRNA_H-fluviatilis_contig102882.601.1|Name=mRNA_H-fluviatilis_contig102882.601.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=564bp|location=Sequence derived from alignment at H-fluviatilis_contig102882:104..788- (Heribaudiella fluviatilis SAG_13_90)
GTGTTGGCGGCTCGAGACGGCGTCGTGGTCCATGAGCGTGATCACTTCCG
CGAGGGTGGTCCACGAGAACGGCTCCTTCCACGGTCGAACTTCGTTGCCC
TTCGCCATTCCGACGGCACCTACACCCGGTACATACACCTCATGCCGGGT
GGTGCGTTGGTGCGAGTTGGACAGGTGTTGGCGGCTCGAGACGGCGTCGT
GGTCCATGAGCGTGATCACTTCCGCGAGGGTGGTCCACGAGAACGGCTCC
TTCCACGGTCGAACTTCGTTGCCCTTCGCCATTCCGACGGCACCTACACC
CGGTACATACACCTCATGCCGGGTGGTGCGTTGGTGCGAGTTGGACAGGA
GGTCAGAGCTGGCCAACCCATCGCGCTCAGCGGCAACACGGGGTTTACCT
CGGAGCCCCATCTCCATTTTGACGCGGTCAGCCTTCTTCCCCAAGAGAGT
GAGTGAGAGGTCAGAGCTGGCCAACCCATCGCGCTCAGCGGCAACACGGG
GTTTACCTCGGAGCCCCATCTCCATTTTGACGCGGTCAGCCTTCTTCCCC
AAGAGAGTGAGTGA
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