mRNA_H-fluviatilis_contig102836.597.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102836.597.1
Unique NamemRNA_H-fluviatilis_contig102836.597.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102836.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102836contigH-fluviatilis_contig102836:3..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size664
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102836.597.1prot_H-fluviatilis_contig102836.597.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102836 29..520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.4156709-UTR-H-fluviatilis_contig102836:2..281622929069.4156709-UTR-H-fluviatilis_contig102836:2..28Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102836 3..28 +
1691135171.2313657-UTR-H-fluviatilis_contig102836:2..281691135171.2313657-UTR-H-fluviatilis_contig102836:2..28Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102836 3..28 +
1622929069.466267-UTR-H-fluviatilis_contig102836:520..7201622929069.466267-UTR-H-fluviatilis_contig102836:520..720Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102836 521..720 +
1691135171.273751-UTR-H-fluviatilis_contig102836:520..7201691135171.273751-UTR-H-fluviatilis_contig102836:520..720Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102836 521..720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.4286075-CDS-H-fluviatilis_contig102836:28..971622929069.4286075-CDS-H-fluviatilis_contig102836:28..97Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 29..97 +
1691135171.2419305-CDS-H-fluviatilis_contig102836:28..971691135171.2419305-CDS-H-fluviatilis_contig102836:28..97Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 29..97 +
1622929069.4394405-CDS-H-fluviatilis_contig102836:124..4611622929069.4394405-CDS-H-fluviatilis_contig102836:124..461Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 125..461 +
1691135171.252102-CDS-H-fluviatilis_contig102836:124..4611691135171.252102-CDS-H-fluviatilis_contig102836:124..461Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 125..461 +
1622929069.4514124-CDS-H-fluviatilis_contig102836:488..5201622929069.4514124-CDS-H-fluviatilis_contig102836:488..520Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 489..520 +
1691135171.2655623-CDS-H-fluviatilis_contig102836:488..5201691135171.2655623-CDS-H-fluviatilis_contig102836:488..520Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102836 489..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102836.597.1

>prot_H-fluviatilis_contig102836.597.1 ID=prot_H-fluviatilis_contig102836.597.1|Name=mRNA_H-fluviatilis_contig102836.597.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=146bp
MKHLETFMSWKVVLSVMDCGYIEICVPLGKTDEAMKLLPKGLKSLPLLVQ
EKHCRVFVPEDVQHTTYEKIMSLSAKLMGDLSPPEPGGPPLITWQKAPYA
AVRLGVHLSDVEKYTWDRIPKEIVAKKWVVFVIPTDGPVEYTDHQ*
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mRNA from alignment at H-fluviatilis_contig102836:3..720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102836.597.1 ID=mRNA_H-fluviatilis_contig102836.597.1|Name=mRNA_H-fluviatilis_contig102836.597.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=718bp|location=Sequence derived from alignment at H-fluviatilis_contig102836:3..720+ (Heribaudiella fluviatilis SAG_13_90)
CCTTGGAAAAGTCTCGAGCTGAGTTCATGAAGCATTTGGAGACCTTCATG
TCATGGAAAGTCGTCTTGTCAGTGATGGATTGTGGCTACATTGAGGTAAC
TGCCTCAAGCAATAGATTCTAGATTTGCGTTCCACTTGGCAAAACAGACG
AGGCTATGAAACTGCTGCCTAAAGGTTTGAAGTCCTTGCCGTTGCTCGTT
CAAGAAAAACATTGTCGCGTCTTTGTCCCCGAAGATGTCCAGCACACGAC
ATACGAAAAGATCATGAGTCTTTCGGCAAAGTTGATGGGAGATCTTTCTC
CACCCGAACCGGGCGGGCCTCCATTGATTACCTGGCAAAAGGCCCCATAT
GCTGCTGTTCGCCTCGGTGTGCACCTCTCCGATGTTGAAAAGTACACGTG
GGACCGCATCCCAAAAGAGATTGTTGCGAAGAAGTGGGTAGTTTTCGTGA
TCCCGACTGGTATCCCACATGGTCATGAACTTTCAGATGGTCCCGTCGAG
TATACTGATCACCAATGATTGCACTTGTTTCCGCTGTGTCACGCAGAAGT
GGAGAACGTGTTAGAGGAGCCGAGGTGGGGTAACCCGCTCGGCGCGAAGG
CAAAGACCTGCAGCAGCGTGCTGTGCAGCCTCTGACAGCAAAAAGCTAGG
ATTTATTTGTTTGGCTTTCATCGCTCAAGCCGTGGAAACGCTCTAGCTCT
CTTTCCCCTCGCCCTCTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102836:3..720+

>mRNA_H-fluviatilis_contig102836.597.1 ID=mRNA_H-fluviatilis_contig102836.597.1|Name=mRNA_H-fluviatilis_contig102836.597.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=876bp|location=Sequence derived from alignment at H-fluviatilis_contig102836:3..720+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGCATTTGGAGACCTTCATGTCATGGAAAGTCGTCTTGTCAGTGAT
GGATTGTGGCTACATTGAGATGAAGCATTTGGAGACCTTCATGTCATGGA
AAGTCGTCTTGTCAGTGATGGATTGTGGCTACATTGAGATTTGCGTTCCA
CTTGGCAAAACAGACGAGGCTATGAAACTGCTGCCTAAAGGTTTGAAGTC
CTTGCCGTTGCTCGTTCAAGAAAAACATTGTCGCGTCTTTGTCCCCGAAG
ATGTCCAGCACACGACATACGAAAAGATCATGAGTCTTTCGGCAAAGTTG
ATGGGAGATCTTTCTCCACCCGAACCGGGCGGGCCTCCATTGATTACCTG
GCAAAAGGCCCCATATGCTGCTGTTCGCCTCGGTGTGCACCTCTCCGATG
TTGAAAAGTACACGTGGGACCGCATCCCAAAAGAGATTGTTGCGAAGAAG
TGGGTAGTTTTCGTGATCCCGACTGATTTGCGTTCCACTTGGCAAAACAG
ACGAGGCTATGAAACTGCTGCCTAAAGGTTTGAAGTCCTTGCCGTTGCTC
GTTCAAGAAAAACATTGTCGCGTCTTTGTCCCCGAAGATGTCCAGCACAC
GACATACGAAAAGATCATGAGTCTTTCGGCAAAGTTGATGGGAGATCTTT
CTCCACCCGAACCGGGCGGGCCTCCATTGATTACCTGGCAAAAGGCCCCA
TATGCTGCTGTTCGCCTCGGTGTGCACCTCTCCGATGTTGAAAAGTACAC
GTGGGACCGCATCCCAAAAGAGATTGTTGCGAAGAAGTGGGTAGTTTTCG
TGATCCCGACTGATGGTCCCGTCGAGTATACTGATCACCAATGAATGGTC
CCGTCGAGTATACTGATCACCAATGA
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