mRNA_H-fluviatilis_contig102802.595.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102802.595.1
Unique NamemRNA_H-fluviatilis_contig102802.595.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102802.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102802contigH-fluviatilis_contig102802:3..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.3387592-CDS-H-fluviatilis_contig102802:2..7491622929069.3387592-CDS-H-fluviatilis_contig102802:2..749Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102802 3..749 -
1691135171.1984465-CDS-H-fluviatilis_contig102802:2..7491691135171.1984465-CDS-H-fluviatilis_contig102802:2..749Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102802 3..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102802.595.1prot_H-fluviatilis_contig102802.595.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102802 3..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102802.595.1

>prot_H-fluviatilis_contig102802.595.1 ID=prot_H-fluviatilis_contig102802.595.1|Name=mRNA_H-fluviatilis_contig102802.595.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=249bp
IERWRHAHDAANRGFVGWDAETGETSPIFLSSNDVGSFTNAVVAALEAAK
AAVGREVLSAATAISLLGGVTEDAEAIRWLAALQRALDALTDASASWPGA
ASRNKFEPPPLDDGGALAAKIESVRSALGGLQKRLAGIAGGPAPDPEPSV
PVEATEGEQQLAYLHDLAKRLAPYRRVSTKPFDSDDHDAALAAAAALHHC
AETQLYLAGLAGFPDLAAFVARNATRADWEGLIARATDLQPMSLGVEML
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mRNA from alignment at H-fluviatilis_contig102802:3..749-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102802.595.1 ID=mRNA_H-fluviatilis_contig102802.595.1|Name=mRNA_H-fluviatilis_contig102802.595.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=747bp|location=Sequence derived from alignment at H-fluviatilis_contig102802:3..749- (Heribaudiella fluviatilis SAG_13_90)
ATTGAGCGATGGCGGCACGCACATGACGCTGCGAACCGAGGCTTCGTGGG
TTGGGACGCCGAGACGGGCGAGACCTCCCCGATCTTCTTGTCGAGCAACG
ATGTCGGTTCGTTCACGAACGCAGTCGTTGCAGCCTTGGAGGCAGCGAAG
GCAGCCGTCGGTCGTGAGGTGCTGTCGGCGGCAACAGCGATCAGCCTTCT
TGGAGGCGTGACGGAAGACGCCGAGGCGATCAGGTGGCTCGCGGCATTGC
AGCGTGCCCTCGACGCGCTGACCGATGCATCTGCGTCCTGGCCCGGAGCG
GCCTCGCGCAACAAGTTCGAACCACCGCCGCTCGACGATGGCGGCGCGCT
CGCTGCCAAGATTGAGTCGGTGAGGTCTGCTTTGGGCGGATTGCAGAAGC
GTCTGGCCGGCATCGCAGGCGGTCCTGCACCAGATCCGGAGCCCTCCGTG
CCGGTTGAGGCCACTGAGGGTGAGCAGCAGCTCGCCTATCTTCACGACCT
GGCCAAACGACTGGCTCCTTACCGGCGTGTCAGCACCAAGCCCTTCGACT
CTGACGACCACGATGCAGCGCTCGCCGCGGCAGCGGCGTTGCACCACTGC
GCTGAGACCCAGCTCTACCTGGCCGGTCTGGCCGGGTTTCCTGACCTTGC
AGCGTTTGTGGCTCGCAACGCCACACGCGCCGACTGGGAGGGCCTCATCG
CGAGAGCTACGGATCTCCAACCGATGAGCCTCGGGGTCGAAATGCTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102802:3..749-

>mRNA_H-fluviatilis_contig102802.595.1 ID=mRNA_H-fluviatilis_contig102802.595.1|Name=mRNA_H-fluviatilis_contig102802.595.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1494bp|location=Sequence derived from alignment at H-fluviatilis_contig102802:3..749- (Heribaudiella fluviatilis SAG_13_90)
ATTGAGCGATGGCGGCACGCACATGACGCTGCGAACCGAGGCTTCGTGGG
TTGGGACGCCGAGACGGGCGAGACCTCCCCGATCTTCTTGTCGAGCAACG
ATGTCGGTTCGTTCACGAACGCAGTCGTTGCAGCCTTGGAGGCAGCGAAG
GCAGCCGTCGGTCGTGAGGTGCTGTCGGCGGCAACAGCGATCAGCCTTCT
TGGAGGCGTGACGGAAGACGCCGAGGCGATCAGGTGGCTCGCGGCATTGC
AGCGTGCCCTCGACGCGCTGACCGATGCATCTGCGTCCTGGCCCGGAGCG
GCCTCGCGCAACAAGTTCGAACCACCGCCGCTCGACGATGGCGGCGCGCT
CGCTGCCAAGATTGAGTCGGTGAGGTCTGCTTTGGGCGGATTGCAGAAGC
GTCTGGCCGGCATCGCAGGCGGTCCTGCACCAGATCCGGAGCCCTCCGTG
CCGGTTGAGGCCACTGAGGGTGAGCAGCAGCTCGCCTATCTTCACGACCT
GGCCAAACGACTGGCTCCTTACCGGCGTGTCAGCACCAAGCCCTTCGACT
CTGACGACCACGATGCAGCGCTCGCCGCGGCAGCGGCGTTGCACCACTGC
GCTGAGACCCAGCTCTACCTGGCCGGTCTGGCCGGGTTTCCTGACCTTGC
AGCGTTTGTGGCTCGCAACGCCACACGCGCCGACTGGGAGGGCCTCATCG
CGAGAGCTACGGATCTCCAACCGATGAGCCTCGGGGTCGAAATGCTGATT
GAGCGATGGCGGCACGCACATGACGCTGCGAACCGAGGCTTCGTGGGTTG
GGACGCCGAGACGGGCGAGACCTCCCCGATCTTCTTGTCGAGCAACGATG
TCGGTTCGTTCACGAACGCAGTCGTTGCAGCCTTGGAGGCAGCGAAGGCA
GCCGTCGGTCGTGAGGTGCTGTCGGCGGCAACAGCGATCAGCCTTCTTGG
AGGCGTGACGGAAGACGCCGAGGCGATCAGGTGGCTCGCGGCATTGCAGC
GTGCCCTCGACGCGCTGACCGATGCATCTGCGTCCTGGCCCGGAGCGGCC
TCGCGCAACAAGTTCGAACCACCGCCGCTCGACGATGGCGGCGCGCTCGC
TGCCAAGATTGAGTCGGTGAGGTCTGCTTTGGGCGGATTGCAGAAGCGTC
TGGCCGGCATCGCAGGCGGTCCTGCACCAGATCCGGAGCCCTCCGTGCCG
GTTGAGGCCACTGAGGGTGAGCAGCAGCTCGCCTATCTTCACGACCTGGC
CAAACGACTGGCTCCTTACCGGCGTGTCAGCACCAAGCCCTTCGACTCTG
ACGACCACGATGCAGCGCTCGCCGCGGCAGCGGCGTTGCACCACTGCGCT
GAGACCCAGCTCTACCTGGCCGGTCTGGCCGGGTTTCCTGACCTTGCAGC
GTTTGTGGCTCGCAACGCCACACGCGCCGACTGGGAGGGCCTCATCGCGA
GAGCTACGGATCTCCAACCGATGAGCCTCGGGGTCGAAATGCTG
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