mRNA_H-fluviatilis_contig1028.594.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1028.594.1
Unique NamemRNA_H-fluviatilis_contig1028.594.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1028.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1028contigH-fluviatilis_contig1028:21290..23275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1028.594.1prot_H-fluviatilis_contig1028.594.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1028 21290..23275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.0766664-CDS-H-fluviatilis_contig1028:21289..213481622929069.0766664-CDS-H-fluviatilis_contig1028:21289..21348Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 21290..21348 -
1691135171.0255964-CDS-H-fluviatilis_contig1028:21289..213481691135171.0255964-CDS-H-fluviatilis_contig1028:21289..21348Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 21290..21348 -
1622929069.086108-CDS-H-fluviatilis_contig1028:22555..226771622929069.086108-CDS-H-fluviatilis_contig1028:22555..22677Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 22556..22677 -
1691135171.0475621-CDS-H-fluviatilis_contig1028:22555..226771691135171.0475621-CDS-H-fluviatilis_contig1028:22555..22677Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 22556..22677 -
1622929069.101086-CDS-H-fluviatilis_contig1028:23069..232751622929069.101086-CDS-H-fluviatilis_contig1028:23069..23275Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 23070..23275 -
1691135171.0611384-CDS-H-fluviatilis_contig1028:23069..232751691135171.0611384-CDS-H-fluviatilis_contig1028:23069..23275Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 23070..23275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1028.594.1

>prot_H-fluviatilis_contig1028.594.1 ID=prot_H-fluviatilis_contig1028.594.1|Name=mRNA_H-fluviatilis_contig1028.594.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=129bp
STDVVRNNTASGRKPRIKWDDELKTALLLQERHQLLFFVELRAGMEVREN
STKSQLARTTQPDAGSTPSVYVRYADGKVQSTTAQDVTASFTVGERPKCC
TMRPRPVRTGSRGKTAYRRLQIQGRKVER
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mRNA from alignment at H-fluviatilis_contig1028:21290..23275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1028.594.1 ID=mRNA_H-fluviatilis_contig1028.594.1|Name=mRNA_H-fluviatilis_contig1028.594.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1986bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:21290..23275- (Heribaudiella fluviatilis SAG_13_90)
TCCACAGATGTCGTGCGCAACAACACAGCAAGCGGCCGCAAGCCCAGAAT
CAAGTGGGACGACGAATTGAAGACGGCGCTGCTGTTGCAGGAGAGACACC
AACTCCTCTTCTTCGTAGAGTTAAGAGCAGGAATGGAAGTCCGTGAAAAC
TCGACTAAATCGCAACTTGCTCGAACAACACAGCCAGACGCAGGAAGCAC
CCCCAGGTATGCCGCAGGATGAATCTGGATTTGGGGCTATTAATTGAGCT
GTAGCTTACTGGTTCGTCCTTACGGGTAGACAGATAGTACAGCACGATAC
AAGCATGGCGCATGTGTCTTGATTTACACCGTACTGTCTGTCCTTCGATG
CAGACAGAGTACCCTACGATGAAGATATGGCGCAGCACGTGTCTTGACTT
CCACCGAATTATCTGTTCAGACAGTACAGCACGATCGTGTAGAGAAGATA
CGTTTCGGCTCTTACCGAAATGTGTATTAATTGGAGCGTCAAACACGCAG
CGAGACTCGAAACGTTGATCAATTACGCGGTATGATGTACAGTTCTTGAC
GAGACAGCGTGAGATAACCCAATGTTTTGCCCTGTTGGTGCGCCGTAGCG
TATATGTACGTTACGCGGACGGTAAAGTGCAGTCGACCACTGCTCAGGAC
GTAACAGCTAGCTTTACGGTTGGCGAGCGCCCGAAGTGCTGTACTATGCG
GCCGCGACCCGTTCGTACAGGTGCGCTAGCTATGCAGCAAAATGAGCCTT
CACTGTACTGCGTCTTAAGTGGCTGCGGCTCTTCATCATGTCGTCTGATG
CAATACATTGTGATGTTGTGCCAAGGCACGCCTGTGATGTGAGACATTTG
GTCTCCATTGTATCGTTGTGGCACTCACTTTCAGGTAACTTGCACTTGTA
TGATTCGAGTGCTGATGGTTGCTGCAGTTTTTTGCCCTCTGTAAGGCATT
GCACTCTATGAGGCGACGAAAATCGGCTCGCCACGCCGTAGCAAGGCGTG
TCGCCTTATTAAGGACTTGTCACTCAACAAGGCGAGTCGGCCGTCACCAC
CTCGTCGCAATAAGGCGGGCTAGGCTCAATTCCATCACATGAATATATAT
GCAGTCAGTATGTAGTTGGTAGTTGACTGTGCGGGCTACAGCGTACACAC
ACATATATATATACACATGTAGGGCGGGACGGTGACGTTCGGATTAGATG
CTCGCTGAGTTAAGCGGCAACGACGATTCGAGTAATGCGAAATGTAAGGC
ACGGATGGCGTTTCTCAGATGATACGCGGCTCGGGCCACGAAGCAGACCG
ACATCAGGGCGTACATCCTAAACAAGAGGCAGTCCCTTTCGCAGAGCACA
GGCAGAAGAGAACAGCACCCAATAGTAAATTTTTATTCTGAATGTTCTTG
GCGACGAGCTACATTGTTGCTGGAATGTAGTGAATTGAAACGCACTTTGT
ATCGTGGCGACTGAGTTTTGGTAGTCCAGACGGTACATAATCTGATGGTA
CAGCATTCCTTGTTTGTTCACAGCAGTACAGAAAACCTACAACGTTTGTT
ATTTTTCGCGTGTTGACCACGAGAAAAGCACGAAAATAATCGAACTTTTA
CATTCGTCCCCAGGGAGACTTACATGCGATGACATCGTCCTCGTGTCATC
AGTCATCCTCCATGGTTCGCGACATGGGTGTTATCCGCAAAATGCCCTCA
ATAAGGCAACCCCTCCTTATTGAGGGCCAAACCTCTTTTCGGCAGATCAA
GCTATAAGGCGACCTGGAGCCCTTTGTCACTAGGTCGCCTTAAAGAGGGC
CACCCACCGCATTGTTATTTACGCCACACTTTTGTCACATCAAGATTCTA
ATTTGTACCCTGATTTCCTCCGCTGTCGGCCGTTGTACCCAAACTCACTC
ACACCACCATGTCTTGAAAATCGCCAGGTTCAAGGGGAAAAACCGCATAT
CGCCGGTTACAAATACAGGGGCGAAAGGTGGAACGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1028:21290..23275-

>mRNA_H-fluviatilis_contig1028.594.1 ID=mRNA_H-fluviatilis_contig1028.594.1|Name=mRNA_H-fluviatilis_contig1028.594.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=774bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:21290..23275- (Heribaudiella fluviatilis SAG_13_90)
TCCACAGATGTCGTGCGCAACAACACAGCAAGCGGCCGCAAGCCCAGAAT
CAAGTGGGACGACGAATTGAAGACGGCGCTGCTGTTGCAGGAGAGACACC
AACTCCTCTTCTTCGTAGAGTTAAGAGCAGGAATGGAAGTCCGTGAAAAC
TCGACTAAATCGCAACTTGCTCGAACAACACAGCCAGACGCAGGAAGCAC
CCCCAGTCCACAGATGTCGTGCGCAACAACACAGCAAGCGGCCGCAAGCC
CAGAATCAAGTGGGACGACGAATTGAAGACGGCGCTGCTGTTGCAGGAGA
GACACCAACTCCTCTTCTTCGTAGAGTTAAGAGCAGGAATGGAAGTCCGT
GAAAACTCGACTAAATCGCAACTTGCTCGAACAACACAGCCAGACGCAGG
AAGCACCCCCAGCGTATATGTACGTTACGCGGACGGTAAAGTGCAGTCGA
CCACTGCTCAGGACGTAACAGCTAGCTTTACGGTTGGCGAGCGCCCGAAG
TGCTGTACTATGCGGCCGCGACCCGTTCGTACAGCGTATATGTACGTTAC
GCGGACGGTAAAGTGCAGTCGACCACTGCTCAGGACGTAACAGCTAGCTT
TACGGTTGGCGAGCGCCCGAAGTGCTGTACTATGCGGCCGCGACCCGTTC
GTACAGGTTCAAGGGGAAAAACCGCATATCGCCGGTTACAAATACAGGGG
CGAAAGGTGGAACGCGTTCAAGGGGAAAAACCGCATATCGCCGGTTACAA
ATACAGGGGCGAAAGGTGGAACGC
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