mRNA_H-fluviatilis_contig1028.593.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1028.593.1
Unique NamemRNA_H-fluviatilis_contig1028.593.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1028.593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1028contigH-fluviatilis_contig1028:20316..21245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size671
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1028.593.1prot_H-fluviatilis_contig1028.593.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1028 20316..20999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.012717-CDS-H-fluviatilis_contig1028:20315..204471622929069.012717-CDS-H-fluviatilis_contig1028:20315..20447Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20316..20447 -
1691135170.9820917-CDS-H-fluviatilis_contig1028:20315..204471691135170.9820917-CDS-H-fluviatilis_contig1028:20315..20447Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20316..20447 -
1622929069.0234346-CDS-H-fluviatilis_contig1028:20468..207531622929069.0234346-CDS-H-fluviatilis_contig1028:20468..20753Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20469..20753 -
1691135170.9904249-CDS-H-fluviatilis_contig1028:20468..207531691135170.9904249-CDS-H-fluviatilis_contig1028:20468..20753Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20469..20753 -
1622929069.0322223-CDS-H-fluviatilis_contig1028:20993..209991622929069.0322223-CDS-H-fluviatilis_contig1028:20993..20999Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20994..20999 -
1691135170.9988887-CDS-H-fluviatilis_contig1028:20993..209991691135170.9988887-CDS-H-fluviatilis_contig1028:20993..20999Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 20994..20999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.045653-UTR-H-fluviatilis_contig1028:20999..212451622929069.045653-UTR-H-fluviatilis_contig1028:20999..21245Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 21000..21245 -
1691135171.007068-UTR-H-fluviatilis_contig1028:20999..212451691135171.007068-UTR-H-fluviatilis_contig1028:20999..21245Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 21000..21245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1028.593.1

>prot_H-fluviatilis_contig1028.593.1 ID=prot_H-fluviatilis_contig1028.593.1|Name=mRNA_H-fluviatilis_contig1028.593.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=141bp
MIALEAATAVSGPRQRRRSSSPVMVSTMPGQSEEVERVSSPGASSAGFQS
LEDTVGEYFQSKTDSPKTKKRRLDVEERKSEALLVEAKARAEEVSLMVKS
RAEEVSLMRGILANSQESPMSKQRRHQLEAQDAATRAADAR
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mRNA from alignment at H-fluviatilis_contig1028:20316..21245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1028.593.1 ID=mRNA_H-fluviatilis_contig1028.593.1|Name=mRNA_H-fluviatilis_contig1028.593.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=930bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:20316..21245- (Heribaudiella fluviatilis SAG_13_90)
TTGGGACGCCTGTAAGCGCACCTACCAACATATCTTGCAAGCGCATCGTC
ACATGGTGAAAAATGGCGAGTGGATCAGCGGCAAGCGTGAGGGCCACCCC
CCAGAACTGACGGACCTCGCCAACATCTTTGTGGCTGAGGAGGACGAGGT
GACTGAAAAGAGGGAACGAGAAAGGCAAGACAACGCTGCTCGCAACGAGG
CTAAAGAAGAAGGAGCCCAGCAGCTCAATTGACTACGGGAGCGAAGATGA
TTGTAAGCGGGTCGTGCAATCGCGAGTTGCAAGTTTTCGTAGTAAGATGC
TGAAACGACGTGCGTCGTGTCGTTTTCGGGTTAGTCGTGAGAGAACGCCA
CGTTAGTACCGTGTTAGGCTTGCATCCTACCAGTCAACACGATGCGTGGA
ACGGGGCCGGCGAATCAACAGTGAACACCCAGTCAGCCCCAAACACGAAA
CGACTCGATCGCTCAACTGTACGTCCCTTTCGCGACACGCAGGCACTGGA
GGCGGCGACGGCAGTGAGTGGACCACGGCAGCGCAGGAGGTCGTCATCCC
CGGTGATGGTGTCCACGATGCCGGGCCAGTCGGAAGAAGTAGAGAGAGTA
TCTTCTCCAGGTGCATCTTCGGCAGGCTTTCAATCGCTTGAAGATACTGT
TGGGGAGTATTTTCAGTCGAAGACAGATAGTCCGAAGACGAAGAAACGTA
GGCTGGACGTGGAGGAGCGAAAATCGGAGGCGCTGCTGGTGGAGGCGAAA
GCTCGTGCGGAAGAAGTCTCTCTCATGGCGAAAGCTCGCGCGGAAGAGGT
GAAATCTCGCGCGGAAGAAGTCTCTCTCATGCGAGGCATCTTAGCAAACT
CGCAGGAGAGTCCAATGAGCAAGCAGAGGCGCCACCAGCTTGAAGCGCAA
GACGCTGCCACTCGGGCCGCGGATGCTCGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1028:20316..21245-

>mRNA_H-fluviatilis_contig1028.593.1 ID=mRNA_H-fluviatilis_contig1028.593.1|Name=mRNA_H-fluviatilis_contig1028.593.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=846bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:20316..21245- (Heribaudiella fluviatilis SAG_13_90)
ATGATTATGATTGCACTGGAGGCGGCGACGGCAGTGAGTGGACCACGGCA
GCGCAGGAGGTCGTCATCCCCGGTGATGGTGTCCACGATGCCGGGCCAGT
CGGAAGAAGTAGAGAGAGTATCTTCTCCAGGTGCATCTTCGGCAGGCTTT
CAATCGCTTGAAGATACTGTTGGGGAGTATTTTCAGTCGAAGACAGATAG
TCCGAAGACGAAGAAACGTAGGCTGGACGTGGAGGAGCGAAAATCGGAGG
CGCTGCTGGTGGAGGCGAAAGCTCGTGCGGAAGAAGTCTCTCTCATGGCA
CTGGAGGCGGCGACGGCAGTGAGTGGACCACGGCAGCGCAGGAGGTCGTC
ATCCCCGGTGATGGTGTCCACGATGCCGGGCCAGTCGGAAGAAGTAGAGA
GAGTATCTTCTCCAGGTGCATCTTCGGCAGGCTTTCAATCGCTTGAAGAT
ACTGTTGGGGAGTATTTTCAGTCGAAGACAGATAGTCCGAAGACGAAGAA
ACGTAGGCTGGACGTGGAGGAGCGAAAATCGGAGGCGCTGCTGGTGGAGG
CGAAAGCTCGTGCGGAAGAAGTCTCTCTCATGGTGAAATCTCGCGCGGAA
GAAGTCTCTCTCATGCGAGGCATCTTAGCAAACTCGCAGGAGAGTCCAAT
GAGCAAGCAGAGGCGCCACCAGCTTGAAGCGCAAGACGCTGCCACTCGGG
CCGCGGATGCTCGGGTGAAATCTCGCGCGGAAGAAGTCTCTCTCATGCGA
GGCATCTTAGCAAACTCGCAGGAGAGTCCAATGAGCAAGCAGAGGCGCCA
CCAGCTTGAAGCGCAAGACGCTGCCACTCGGGCCGCGGATGCTCGG
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