mRNA_H-fluviatilis_contig1028.592.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1028.592.1
Unique NamemRNA_H-fluviatilis_contig1028.592.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig1028.592.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.050e-13
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 3 
Query:  339 AAKANGKSQPDHDGSLSRRLMCMEKLAENTRYWEIAELTWLGSVVQYRHKELQMVPRTLMASFLEHHGIGPGQAPTLLVLSGL 587
            AA+  G+  P+HDG L+RRL CMEKL+E     ++AEL  + +V QY +KELQMVP TL  ++L+ HGI    A +LL+LSG+
Sbjct:  194 AARVRGRQPPEHDGGLTRRLACMEKLSE-VLGTQLAELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGM 275
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BLAST of mRNA_H-fluviatilis_contig1028.592.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 9.910e-13
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 3 
Query:  339 AAKANGKSQPDHDGSLSRRLMCMEKLAENTRYWEIAELTWLGSVVQYRHKELQMVPRTLMASFLEHHGIGPGQAPTLLVLSGL 587
            AA+  G+  P+HDG L+RRL CMEKL+E     ++ EL  + +V QY +KELQMVP TL  ++L+ HGI    A +LL+LSG+
Sbjct:  980 AARVRGRQPPEHDGGLTRRLACMEKLSEILGT-QLTELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGM 1061
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1028.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI6_9PHAE2.050e-1350.60Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIW7_ECTSI9.910e-1349.40Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1028contigH-fluviatilis_contig1028:2773..4843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue8.6e-13
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categorysignal peptide
Exons3
Model size1068
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1028.592.1prot_H-fluviatilis_contig1028.592.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1028 2856..4542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.9344122-UTR-H-fluviatilis_contig1028:2772..28551622929068.9344122-UTR-H-fluviatilis_contig1028:2772..2855Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 2773..2855 +
1691135170.9375992-UTR-H-fluviatilis_contig1028:2772..28551691135170.9375992-UTR-H-fluviatilis_contig1028:2772..2855Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 2773..2855 +
1622929068.9794416-UTR-H-fluviatilis_contig1028:4542..48431622929068.9794416-UTR-H-fluviatilis_contig1028:4542..4843Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 4543..4843 +
1691135170.9738498-UTR-H-fluviatilis_contig1028:4542..48431691135170.9738498-UTR-H-fluviatilis_contig1028:4542..4843Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig1028 4543..4843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.9470994-CDS-H-fluviatilis_contig1028:2855..31941622929068.9470994-CDS-H-fluviatilis_contig1028:2855..3194Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 2856..3194 +
1691135170.9481738-CDS-H-fluviatilis_contig1028:2855..31941691135170.9481738-CDS-H-fluviatilis_contig1028:2855..3194Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 2856..3194 +
1622929068.9603374-CDS-H-fluviatilis_contig1028:3639..37741622929068.9603374-CDS-H-fluviatilis_contig1028:3639..3774Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 3640..3774 +
1691135170.9564312-CDS-H-fluviatilis_contig1028:3639..37741691135170.9564312-CDS-H-fluviatilis_contig1028:3639..3774Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 3640..3774 +
1622929068.9697433-CDS-H-fluviatilis_contig1028:4332..45421622929068.9697433-CDS-H-fluviatilis_contig1028:4332..4542Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 4333..4542 +
1691135170.96579-CDS-H-fluviatilis_contig1028:4332..45421691135170.96579-CDS-H-fluviatilis_contig1028:4332..4542Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1028 4333..4542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1028.592.1

>prot_H-fluviatilis_contig1028.592.1 ID=prot_H-fluviatilis_contig1028.592.1|Name=mRNA_H-fluviatilis_contig1028.592.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=228bp
MGTLSCIFHVLALGLFYLSTPRATYCRSYSLYVTFHNRPLRQPTNSRPIS
IHSIDEKNLTKNKTSREGSAVSGDCTRQTIGASHPAAKANGKSQPDHDGS
LSRRLMCMEKLAENTRYWEIAELTWLGSVVQYRHKELQMVPRTLMASFLE
HHGIGPGQAPTLLVLSGLWVRQWLQLPHASHGADQVDGGFADSERDDSGG
AERPKSHKCYWGLAVAIIESLAVFFVY*
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mRNA from alignment at H-fluviatilis_contig1028:2773..4843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1028.592.1 ID=mRNA_H-fluviatilis_contig1028.592.1|Name=mRNA_H-fluviatilis_contig1028.592.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:2773..4843+ (Heribaudiella fluviatilis SAG_13_90)
TCCGATGTGCTTTTTAACGTTCAGATCGCTGTGGTTCCTACCCACCAGCC
ATCAGCGCGCGAGGATTCTCTAAGCAGTTCTGAATGGGGACATTATCTTG
TATCTTTCATGTTTTGGCCTTGGGCCTTTTCTATCTTTCCACTCCTCGTG
CCACATATTGTCGGTCGTATAGCTTATATGTCACGTTCCATAATCGCCCC
CTGCGTCAACCCACTAATAGTCGTCCCATTTCCATTCATTCAATCGACGA
AAAAAATCTAACGAAGAACAAAACATCACGTGAGGGAAGTGCGGTCAGCG
GCGACTGTACTCGGCAAACAATTGGCGCTTCTCATCCGGCGGCGAAAGCC
AATGGCAAGAGTCAGCCAGACCACGACGGTAGCCTTTCTCGACGGCTCAT
GTGCATGGAGAAACTCGCAGAGGTACGACCTTAAAGCATCAGCATCATTA
CCATTACCCGCATCTTATGTTGAGAAGTTCGATCGGCTGAGACTGTCTCG
TTTGCTCGGTGGTTCTAATTTGACTTTACTTTCTGTCATGGTAAGATATA
TATATGTATGATGTATATTTGCGCATTATGGCGCTTTCGTCTGAGGTTTC
AAGTCGGCTTGATTTTTTCCGTCTTTCCCCCTCTTCTGTCTTAAGTTGAG
CACCACAGATACCGGGGCATCAGCTGACGGAAGCTTGTCTAGGATATCTG
GTCAGCTGACCTTCATTTCGATCATTGCGCTGTTTTGGCGTGCGAGTCCT
AGTAAAGCGATGAAGCTGTGCTGATTACTTTTGGTCGGGTGACAAACTCT
ATTGTTTTTTTTCATTCAGCTTGAGATTTCGCGGTCGCTCCACTGCTTTG
CTTTCTTCTTTTTTCAGAACACTAGATACTGGGAAATAGCAGAGCTGACG
TGGTTGGGATCTGTGGTGCAATACAGGCACAAGGAGCTGCAAATGGTGCC
GCGGACGCTGATGGCAAGCTTCCTCGAGCATCACGGCATTGGTCCTGGAC
AGGTAGAAAACAGGGGAAAACGACTGTATTTTGTCTTTCCACTGAATTTA
TTGCCGTTGACCAAGAGTGAAGGCGCTTCTTCGGGCTGGAGCCTTGGACA
GTTTGATTCCATGCTGAGTATTATTCTCCGTTGAGAGGGCGGGGGGGGGG
GAGGGGGGGGCGTACCAGCATTATAAATTACCTTTTCTCCCTCGGGAGTT
GACAGGTTTCACCCGTACTGACAGAAAATACAATACGGTGTACTACACCC
ATGATAATATGTATTACACAGGTGATATGTAGTCAACACATACGTCTCGC
GCAGGTCTGCTTGGCAACAAAACGCTCCGCATCGCTACTTTGTACATCTG
CGGTGTCGTCTCGGTGTTCGCACGGTCTGGTTGTGTTGTATTGCAGTGTG
GTGTGTATGTGTGCACACGTACACAGTATTTTCCGGAACGGAATAATTAC
GAACGATTGCTCTCGTTTCTTTCTCGCTCCTCCTAAAAAATAACGAGACA
TGTCGCGCGCTCGACCTACTTTTTTCTTTTTTGGCCACCAAAACAAATGC
ACGTACGTAGGCGCCCACGCTCCTGGTGCTGAGTGGCCTCTGGGTGCGGC
AATGGCTTCAGCTTCCTCACGCGTCCCATGGTGCAGATCAAGTAGACGGC
GGCTTCGCTGACTCCGAGAGAGATGACAGTGGCGGAGCGGAGCGTCCAAA
AAGTCACAAATGCTACTGGGGGCTTGCGGTTGCAATAATAGAGTCACTCG
CTGTTTTTTTTGTCTATTAGTAGTAAGTGGAAGTGGAATATGACGAGGGT
GTTGGCCAACAAAAGGTTAAGGCCACACGGTGTTTTTTTTCGTTATTCTT
CCGTGTGCATTTTATTGTCTTAACTCTCAAAGTGCGTCGGGAGTTTGTTT
GTTTCGTATATTTCTGTTTACATGCTCGTTTTTGCCTCACGGCGTCGGGG
AACTTCACTTTTTTTTTGTTCTTGTTTCGATGATGACATGCTTTCGGATT
GCCTGCCTTGGGACAGTCAGGTGCTTGTTCGACATGAGTGCCTGGATTGT
TGTTGTTGCTGTTGTTATTGT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1028:2773..4843+

>mRNA_H-fluviatilis_contig1028.592.1 ID=mRNA_H-fluviatilis_contig1028.592.1|Name=mRNA_H-fluviatilis_contig1028.592.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1368bp|location=Sequence derived from alignment at H-fluviatilis_contig1028:2773..4843+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGGACATTATCTTGTATCTTTCATGTTTTGGCCTTGGGCCTTTTCTA
TCTTTCCACTCCTCGTGCCACATATTGTCGGTCGTATAGCTTATATGTCA
CGTTCCATAATCGCCCCCTGCGTCAACCCACTAATAGTCGTCCCATTTCC
ATTCATTCAATCGACGAAAAAAATCTAACGAAGAACAAAACATCACGTGA
GGGAAGTGCGGTCAGCGGCGACTGTACTCGGCAAACAATTGGCGCTTCTC
ATCCGGCGGCGAAAGCCAATGGCAAGAGTCAGCCAGACCACGACGGTAGC
CTTTCTCGACGGCTCATGTGCATGGAGAAACTCGCAGAGATGGGGACATT
ATCTTGTATCTTTCATGTTTTGGCCTTGGGCCTTTTCTATCTTTCCACTC
CTCGTGCCACATATTGTCGGTCGTATAGCTTATATGTCACGTTCCATAAT
CGCCCCCTGCGTCAACCCACTAATAGTCGTCCCATTTCCATTCATTCAAT
CGACGAAAAAAATCTAACGAAGAACAAAACATCACGTGAGGGAAGTGCGG
TCAGCGGCGACTGTACTCGGCAAACAATTGGCGCTTCTCATCCGGCGGCG
AAAGCCAATGGCAAGAGTCAGCCAGACCACGACGGTAGCCTTTCTCGACG
GCTCATGTGCATGGAGAAACTCGCAGAGAACACTAGATACTGGGAAATAG
CAGAGCTGACGTGGTTGGGATCTGTGGTGCAATACAGGCACAAGGAGCTG
CAAATGGTGCCGCGGACGCTGATGGCAAGCTTCCTCGAGCATCACGGCAT
TGGTCCTGGACAGAACACTAGATACTGGGAAATAGCAGAGCTGACGTGGT
TGGGATCTGTGGTGCAATACAGGCACAAGGAGCTGCAAATGGTGCCGCGG
ACGCTGATGGCAAGCTTCCTCGAGCATCACGGCATTGGTCCTGGACAGGC
GCCCACGCTCCTGGTGCTGAGTGGCCTCTGGGTGCGGCAATGGCTTCAGC
TTCCTCACGCGTCCCATGGTGCAGATCAAGTAGACGGCGGCTTCGCTGAC
TCCGAGAGAGATGACAGTGGCGGAGCGGAGCGTCCAAAAAGTCACAAATG
CTACTGGGGGCTTGCGGTTGCAATAATAGAGTCACTCGCTGTTTTTTTTG
TCTATTAGGCGCCCACGCTCCTGGTGCTGAGTGGCCTCTGGGTGCGGCAA
TGGCTTCAGCTTCCTCACGCGTCCCATGGTGCAGATCAAGTAGACGGCGG
CTTCGCTGACTCCGAGAGAGATGACAGTGGCGGAGCGGAGCGTCCAAAAA
GTCACAAATGCTACTGGGGGCTTGCGGTTGCAATAATAGAGTCACTCGCT
GTTTTTTTTGTCTATTAG
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