mRNA_H-fluviatilis_contig102773.587.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102773.587.1
Unique NamemRNA_H-fluviatilis_contig102773.587.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: Q54E02_DICDI (CS domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54E02_DICDI)

HSP 1 Score: 88.6 bits (218), Expect = 9.800e-22
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFIDV 153
            GRTIYEW+QS+EE+N+YIQPPPGL +  V C+ITP  L LGIKGNPPFI+V
Sbjct:   16 GRTIYEWDQSIEEINIYIQPPPGLTSKMVACEITPTQLILGIKGNPPFINV 66
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A6H5JP28_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP28_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.000e-21
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GRT+YEWEQSLEEVNLYI+ PPG++A +++C ITPRH+ LG+KGNPPFID
Sbjct:  101 GRTVYEWEQSLEEVNLYIETPPGVKADRIECTITPRHICLGLKGNPPFID 150
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A8J2WTL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTL1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.450e-20
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GR IYEW+QSLE+VN+Y++PPPG+    +DCK+TP HLRLG++GNPPF+D
Sbjct:   97 GRLIYEWDQSLEDVNIYVKPPPGVTPDMIDCKLTPSHLRLGLRGNPPFLD 146
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: F0ZT53_DICPU (CS domain-containing protein (Fragment) n=2 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZT53_DICPU)

HSP 1 Score: 84.3 bits (207), Expect = 2.730e-20
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GRTIYEWEQS+EE+N+++QPPPG+ +  + C+ITP  L LGIKGNPPFI+
Sbjct:   16 GRTIYEWEQSIEEINIFVQPPPGITSKMIACEITPTKLILGIKGNPPFIN 65
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A7S4EBP3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBP3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.530e-20
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GR IYEW+QSLE+VN+Y++PPPG+    +DCK+TP HLRLG++GNPPF+D
Sbjct:  153 GRLIYEWDQSLEDVNIYVKPPPGVTPDMIDCKLTPSHLRLGLRGNPPFLD 202
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: F0XX75_AURAN (CS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX75_AURAN)

HSP 1 Score: 86.7 bits (213), Expect = 5.180e-20
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GR IYEW+QSLE+VN+YI PPPG+    +DC I+P HLRLG++GNPPF+D
Sbjct:   29 GRVIYEWDQSLEDVNIYITPPPGVVPDMIDCTISPNHLRLGLRGNPPFLD 78
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A7S0HXR0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HXR0_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-19
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID 150
            GRTIYEW QSLEEV++YI PPPG+ A  +DCKI P  L LGIKGNPPF+D
Sbjct:   36 GRTIYEWHQSLEEVHVYIAPPPGVTAKMIDCKILPTQLTLGIKGNPPFMD 85
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A812Q203_SYMPI (Nudcd2 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812Q203_SYMPI)

HSP 1 Score: 84.3 bits (207), Expect = 4.240e-19
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFI--DVREDVRTD 174
            GRT+YEWEQ+++E ++YIQPPPG+    +D KI PRHLR+GIKGNPPF+  D    V TD
Sbjct:   25 GRTVYEWEQNIDETHIYIQPPPGVTKHHLDIKIEPRHLRVGIKGNPPFLNEDPFSLVETD 84
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A0M0J8P9_9EUKA (Nudc domain-containing protein 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8P9_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 2.370e-18
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFIDVREDVRTDR 177
            GR IYEWEQ+LEE++++I+ PPG++A  +D KI  + LR+G++GNPPFIDVR   R  +
Sbjct:   15 GRKIYEWEQTLEEIHVFIEVPPGVKAKMLDIKIDAKRLRVGLRGNPPFIDVRAATRVQK 73
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BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Match: A0A7S2QCD0_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QCD0_9DINO)

HSP 1 Score: 82.0 bits (201), Expect = 3.310e-18
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFI--DVREDVRTD 174
            GRT+YEWEQ+++E ++YIQPP G+   Q+D KI PRHL++G+KGNPPF+  D    V TD
Sbjct:   25 GRTVYEWEQNIDETHIYIQPPEGVTKHQLDIKIDPRHLKVGLKGNPPFLNEDFYSLVETD 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102773.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q54E02_DICDI9.800e-2272.55CS domain-containing protein n=1 Tax=Dictyostelium... [more]
A0A6H5JP28_9PHAE1.000e-2174.00CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A8J2WTL1_9STRA2.450e-2066.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0ZT53_DICPU2.730e-2066.00CS domain-containing protein (Fragment) n=2 Tax=Di... [more]
A0A7S4EBP3_9STRA3.530e-2066.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0XX75_AURAN5.180e-2066.00CS domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7S0HXR0_9EUKA1.430e-1972.00Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A812Q203_SYMPI4.240e-1960.00Nudcd2 protein n=3 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A0M0J8P9_9EUKA2.370e-1854.24Nudc domain-containing protein 2 n=1 Tax=Chrysochr... [more]
A0A7S2QCD0_9DINO3.310e-1856.67Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102773contigH-fluviatilis_contig102773:59..238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2e-17
Seed eggNOG ortholog2880.D8LBJ0
Preferred nameNUDCD2
KEGG koko:K12827
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0032502,GO:0044424,GO:0044464,GO:0051082
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-27_003800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.6497817-CDS-H-fluviatilis_contig102773:58..2381622929068.6497817-CDS-H-fluviatilis_contig102773:58..238Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102773 59..238 -
1691135170.7797112-CDS-H-fluviatilis_contig102773:58..2381691135170.7797112-CDS-H-fluviatilis_contig102773:58..238Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102773 59..238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102773.587.1prot_H-fluviatilis_contig102773.587.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102773 59..238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102773.587.1

>prot_H-fluviatilis_contig102773.587.1 ID=prot_H-fluviatilis_contig102773.587.1|Name=mRNA_H-fluviatilis_contig102773.587.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=60bp
GRTIYEWEQSLEEVNLYIQPPPGLQAGQVDCKITPRHLRLGIKGNPPFID
VREDVRTDR*
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mRNA from alignment at H-fluviatilis_contig102773:59..238-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102773.587.1 ID=mRNA_H-fluviatilis_contig102773.587.1|Name=mRNA_H-fluviatilis_contig102773.587.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=180bp|location=Sequence derived from alignment at H-fluviatilis_contig102773:59..238- (Heribaudiella fluviatilis SAG_13_90)
GGGAGGACGATTTATGAGTGGGAGCAGTCTCTGGAAGAAGTTAACCTGTA
CATTCAGCCCCCGCCGGGTTTGCAGGCGGGGCAAGTCGATTGCAAGATTA
CTCCGAGGCATCTGCGATTGGGTATCAAGGGAAACCCACCCTTCATCGAT
GTGAGAGAAGACGTGCGAACAGATCGTTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102773:59..238-

>mRNA_H-fluviatilis_contig102773.587.1 ID=mRNA_H-fluviatilis_contig102773.587.1|Name=mRNA_H-fluviatilis_contig102773.587.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=360bp|location=Sequence derived from alignment at H-fluviatilis_contig102773:59..238- (Heribaudiella fluviatilis SAG_13_90)
GGGAGGACGATTTATGAGTGGGAGCAGTCTCTGGAAGAAGTTAACCTGTA
CATTCAGCCCCCGCCGGGTTTGCAGGCGGGGCAAGTCGATTGCAAGATTA
CTCCGAGGCATCTGCGATTGGGTATCAAGGGAAACCCACCCTTCATCGAT
GTGAGAGAAGACGTGCGAACAGATCGTTGAGGGAGGACGATTTATGAGTG
GGAGCAGTCTCTGGAAGAAGTTAACCTGTACATTCAGCCCCCGCCGGGTT
TGCAGGCGGGGCAAGTCGATTGCAAGATTACTCCGAGGCATCTGCGATTG
GGTATCAAGGGAAACCCACCCTTCATCGATGTGAGAGAAGACGTGCGAAC
AGATCGTTGA
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