mRNA_H-fluviatilis_contig102754.586.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102754.586.1
Unique NamemRNA_H-fluviatilis_contig102754.586.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: W7TTS7_9STRA (Thymidylate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTS7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.240e-25
Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNGDVVLRIAVE 318
            G  GGTAG+PIL AIESE L DVMVVVTRYFGGIKLG GGL RAY G AR CL++AE  T  P + + + AP+   G V+  ++   ++ E++T   ++++ + V+
Sbjct:  140 GEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAE-EIIVDVKVD 244          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A836C1E9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C1E9_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 6.450e-25
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVS--ECQRLSEEFTTNGDVVLRIAVE 318
            G  GGTAG+PIL AIE EGL  V V+VTRYFGGIKLG GGL RAY G A+ CL+ A R      +++ V  P G LG VY  +   +C RL+EE+ ++G V++R  V+
Sbjct:   79 GEPGGTAGRPILSAIEGEGLERVAVLVTRYFGGIKLGAGGLVRAYGGAAKECLRLAPRAFAKARVEVQVNVPYGELGTVYGCLDMHQCTRLAEEYGSSGTVLIRALVD 186          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A7S2X6S7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X6S7_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 8.930e-23
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNGDVVL 303
            G  GGTAG+PIL AIE  GL  V VVVTR+FGGIKLG GGLCRAY G A  CL+ A+R    P+++L V+     +G +Y A+S  Q +  ++  +G VV+
Sbjct:  157 GEPGGTAGRPILQAIEYSGLDGVGVVVTRFFGGIKLGAGGLCRAYGGAAASCLRQAQRVKVVPMVELRVSCAADLIGIIYRALSAYQGVHTDYCEDGSVVI 257          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A399F4R6_9DEIN (IMPACT family member YigZ n=1 Tax=Meiothermus granaticius NBRC 107808 TaxID=1227551 RepID=A0A399F4R6_9DEIN)

HSP 1 Score: 95.9 bits (237), Expect = 1.670e-22
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   13 GTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNG 291
            GTAG+P+L AIE +GL  VMVVVTRYFGG+KLG GGL RAY+G A  CL+ A +    P+ +L + AP      V+H ++  QR SE +T  G
Sbjct:   67 GTAGRPVLSAIEGQGLDGVMVVVTRYFGGVKLGAGGLIRAYSGAAAECLRQAPKREVLPMARLRLQAPFELSNTVFHLLTGVQRESETYTEQG 159          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A1T1BI42_9DEIO (IMPACT family protein n=12 Tax=Deinococcus TaxID=1298 RepID=A0A1T1BI42_9DEIO)

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-22
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRL-SEEFTTNGDVVLRIAV 315
            G  GGTAG PIL AIE +G+  VMVVV R++GG+KLGTGGL RAY GGA  CL+ A R T      L+V+ P  FLGG+YH +     +  EE  +   V LR+ V
Sbjct:   69 GEPGGTAGAPILRAIEGQGVDRVMVVVVRFYGGVKLGTGGLVRAYGGGAAECLRTAARVTVRARRALAVSVPFEFLGGLYHLLGSLDVVRGEEAYSGAGVSLRVEV 174          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A7S3Z9V1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9V1_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 2.540e-22
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNGDVVL 303
            G  GGTAG+PIL AIE  GL  V VVVTR+FGGIKLG GGLCRAY G A  CL+ A+R    P+++L V+     +G +Y  +S  Q +  ++  +G VV+
Sbjct:  159 GEPGGTAGRPILQAIEYSGLDGVGVVVTRFFGGIKLGAGGLCRAYGGAAATCLRQAQRVKVVPMVELRVSCAADLIGIIYRTLSAYQGVRTDYCEDGSVVI 259          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A7S0DAN8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DAN8_MICPS)

HSP 1 Score: 97.1 bits (240), Expect = 2.580e-22
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPV-GFLGGVYHAVSE--CQRLSEEFTTNGDVVLRIAVE 318
            G  GGTAG+PIL AIE  G   + VVVTRY+GG +LGTGGL RAY G A   L+DA    +TP++   +TAP   FLG +Y A+ E   ++  EEF  +G V ++I VE
Sbjct:  127 GEPGGTAGRPILAAIEGSGFDALAVVVTRYYGGTQLGTGGLIRAYGGAAAKALEDAPGILKTPMVDAIITAPSPDFLGAIYRAMEEWRAEKEDEEFPEDGSVFVQILVE 235          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: A0A3E1K5H2_9GAMM (YigZ family protein n=1 Tax=Wenzhouxiangella sediminis TaxID=1792836 RepID=A0A3E1K5H2_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 4.920e-22
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSEC--QRLSEEFTTNG 291
            G  GGTAG+PIL AIES+G    +VVVTR+FGG KLGTGGL RAY G A   L+ AE     P ++L +  P  F+G  +HA+SE   ++LSE++ T+G
Sbjct:   64 GEPGGTAGRPILQAIESQGYDRTVVVVTRFFGGTKLGTGGLARAYGGTANEALRTAESTPIVPKVRLRLNLPFEFVGAAHHALSEFGGEKLSEDYDTDG 162          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: UPI00047FDB9A (YigZ family protein n=1 Tax=Meiothermus cerbereus TaxID=65552 RepID=UPI00047FDB9A)

HSP 1 Score: 94.4 bits (233), Expect = 7.270e-22
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   13 GTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNGDVVLRIAVELGQV 330
            GTAG+PILGAI+++GL  VMVVVTRYFGGIKLG GGL RAY G A  CL+ A ++   P+++  + AP  +   +Y      +RL+E +   G V + + +E  Q+
Sbjct:   68 GTAGRPILGAIDAQGLDRVMVVVTRYFGGIKLGAGGLVRAYGGVAAECLRQAPKQAIRPMMRCQLRAPFEYTNALYQITEGLKRLTENYDEEG-VWVEVQIEEQQL 172          
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Match: UPI000369F5B1 (IMPACT family protein n=1 Tax=Calidithermus timidus TaxID=307124 RepID=UPI000369F5B1)

HSP 1 Score: 94.4 bits (233), Expect = 7.610e-22
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGARLCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFT--TNGDVVLRIAVE 318
            G  GGTAGQPIL AI+++GL  VMVVVTRYFGG+KLG GGL RAY G A  CL+ A +    P L+L + AP    G VY A+ E  +L+ EF   T   +VL   +E
Sbjct:   63 GEPGGTAGQPILRAIQAQGLDRVMVVVTRYFGGVKLGAGGLARAYGGVAAECLRQAPKREIVPRLRLRLEAPFEMAGQVY-ALLERWKLAREFEGYTEAGLVLEFVLE 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102754.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TTS7_9STRA3.240e-2550.00Thymidylate synthase n=1 Tax=Nannochloropsis gadit... [more]
A0A836C1E9_9CHLO6.450e-2551.85Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S2X6S7_9EUKA8.930e-2350.50Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A399F4R6_9DEIN1.670e-2251.61IMPACT family member YigZ n=1 Tax=Meiothermus gran... [more]
A0A1T1BI42_9DEIO2.200e-2250.94IMPACT family protein n=12 Tax=Deinococcus TaxID=1... [more]
A0A7S3Z9V1_9EUKA2.540e-2249.50Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0DAN8_MICPS2.580e-2249.54Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A3E1K5H2_9GAMM4.920e-2251.52YigZ family protein n=1 Tax=Wenzhouxiangella sedim... [more]
UPI00047FDB9A7.270e-2246.23YigZ family protein n=1 Tax=Meiothermus cerbereus ... [more]
UPI000369F5B17.610e-2251.85IMPACT family protein n=1 Tax=Calidithermus timidu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102754contigH-fluviatilis_contig102754:50..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.4
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog1122221.JHVI01000010_gene2553
Preferred nameyigZ
KEGG rclassRC00219,RC00332
KEGG koko:K00560,ko:K01271
KEGG ReactionR02101
KEGG Pathwayko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523
KEGG ModuleM00053
EggNOG free text desc.PFAM Uncharacterised protein family UPF0029, Impact, N-terminal
EggNOG OGs1WJVU@1297,COG1739@1,COG1739@2
EC2.1.1.45,3.4.13.9
COG Functional cat.S
Best tax levelDeinococcus-Thermus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.6099317-CDS-H-fluviatilis_contig102754:49..2221622929068.6099317-CDS-H-fluviatilis_contig102754:49..222Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102754 50..222 +
1691135170.7588534-CDS-H-fluviatilis_contig102754:49..2221691135170.7588534-CDS-H-fluviatilis_contig102754:49..222Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102754 50..222 +
1622929068.621309-CDS-H-fluviatilis_contig102754:625..7881622929068.621309-CDS-H-fluviatilis_contig102754:625..788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102754 626..788 +
1691135170.7698689-CDS-H-fluviatilis_contig102754:625..7881691135170.7698689-CDS-H-fluviatilis_contig102754:625..788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102754 626..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102754.586.1prot_H-fluviatilis_contig102754.586.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102754 50..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102754.586.1

>prot_H-fluviatilis_contig102754.586.1 ID=prot_H-fluviatilis_contig102754.586.1|Name=mRNA_H-fluviatilis_contig102754.586.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=112bp
GLAGGTAGQPILGAIESEGLSDVMVVVTRYFGGIKLGTGGLCRAYAGGAR
LCLQDAERETRTPVLQLSVTAPVGFLGGVYHAVSECQRLSEEFTTNGDVV
LRIAVELGQVS*
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mRNA from alignment at H-fluviatilis_contig102754:50..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102754.586.1 ID=mRNA_H-fluviatilis_contig102754.586.1|Name=mRNA_H-fluviatilis_contig102754.586.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=739bp|location=Sequence derived from alignment at H-fluviatilis_contig102754:50..788+ (Heribaudiella fluviatilis SAG_13_90)
GGGCTCGCAGGCGGAACAGCCGGACAGCCAATTCTCGGGGCCATTGAGTC GGAGGGTCTTAGCGATGTCATGGTGGTGGTCACTCGATACTTCGGGGGTA TTAAGTTGGGAACGGGGGGCCTCTGCCGGGCGTACGCAGGGGGAGCAAGA CTTTGTCTCCAGGATGCAGAGAGGTGCGATTACACCGTATACACCAAGCC TACCCAACCCTACTCGATTTCCCCGTGAAGGAATGCTGCCTCAGCTGAAT CAACAGCTTCTGTTGGGCGTGAGTTCGTCAGATCGAATTGTTGTGGACTG TTTCTGTTCAATGTTTTGTGGATGGAATGTGGATACCTTCATGACCGCTT CCAGATCCTGACACGCGACGGAATGGTCTCGCGACGTGGTTGTTTGTTTT CTTCGACCGCTCGGACAAAAGTGATCACACCCGCAACTTTCTTTGTCATG TTTCTGTCGAGCGGGAGAGCGGTAGCCGCTGAAACACGTAGCTTGCCTTC TGTTCAGCCAAGCCGACGTCGCTGTGCCCAAACCTCGAGCCCCATCGCGA TATTGGTTGCCTCCTACCGTACACAGGGAAACGCGAACCCCTGTGTTGCA ACTGAGCGTTACTGCGCCCGTTGGATTCCTCGGAGGTGTCTATCACGCCG TTTCTGAATGCCAGCGACTTTCTGAGGAGTTCACCACTAACGGCGACGTG GTTTTAAGGATAGCTGTAGAGTTGGGCCAGGTAAGCTAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102754:50..788+

>mRNA_H-fluviatilis_contig102754.586.1 ID=mRNA_H-fluviatilis_contig102754.586.1|Name=mRNA_H-fluviatilis_contig102754.586.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=672bp|location=Sequence derived from alignment at H-fluviatilis_contig102754:50..788+ (Heribaudiella fluviatilis SAG_13_90)
GGGCTCGCAGGCGGAACAGCCGGACAGCCAATTCTCGGGGCCATTGAGTC
GGAGGGTCTTAGCGATGTCATGGTGGTGGTCACTCGATACTTCGGGGGTA
TTAAGTTGGGAACGGGGGGCCTCTGCCGGGCGTACGCAGGGGGAGCAAGA
CTTTGTCTCCAGGATGCAGAGAGGGGCTCGCAGGCGGAACAGCCGGACAG
CCAATTCTCGGGGCCATTGAGTCGGAGGGTCTTAGCGATGTCATGGTGGT
GGTCACTCGATACTTCGGGGGTATTAAGTTGGGAACGGGGGGCCTCTGCC
GGGCGTACGCAGGGGGAGCAAGACTTTGTCTCCAGGATGCAGAGAGGGAA
ACGCGAACCCCTGTGTTGCAACTGAGCGTTACTGCGCCCGTTGGATTCCT
CGGAGGTGTCTATCACGCCGTTTCTGAATGCCAGCGACTTTCTGAGGAGT
TCACCACTAACGGCGACGTGGTTTTAAGGATAGCTGTAGAGTTGGGCCAG
GTAAGCTAGGGAAACGCGAACCCCTGTGTTGCAACTGAGCGTTACTGCGC
CCGTTGGATTCCTCGGAGGTGTCTATCACGCCGTTTCTGAATGCCAGCGA
CTTTCTGAGGAGTTCACCACTAACGGCGACGTGGTTTTAAGGATAGCTGT
AGAGTTGGGCCAGGTAAGCTAG
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