mRNA_H-fluviatilis_contig102744.585.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102744.585.1
Unique NamemRNA_H-fluviatilis_contig102744.585.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: D7G8L9_ECTSI (Cycloartenol synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.510e-36
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTY 228
            YE LNPSETFGDIMIDYS VECSCSS+ AL  FA  YP HR +E+KRS+  GRRF++SIQRPDGSWYGSWGVCFTY
Sbjct:   78 YETLNPSETFGDIMIDYSYVECSCSSMTALKAFAKTYPDHRAAEIKRSLSNGRRFIRSIQRPDGSWYGSWGVCFTY 153          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: L1K034_GUITC (SQHop_cyclase_C domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K034_GUITC)

HSP 1 Score: 119 bits (299), Expect = 1.210e-31
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE +NPSE FGDIMIDYS VECS +S+ AL  F   YPHHR+ E+  ++  G RF++SIQRPDGSWYGSWGVCFTYG
Sbjct:   35 YEWMNPSEVFGDIMIDYSYVECSSASMTALAAFKKFYPHHRSKEIDGALKRGARFIRSIQRPDGSWYGSWGVCFTYG 111          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A7S2XZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ52_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.010e-30
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE  NPS+ FGDIMIDYS VECS + + AL  F   +P HR+SE+ +S+  GR+FLKSIQR DGSWYGSWGVCFTYG
Sbjct:   32 YEIFNPSDVFGDIMIDYSYVECSTACITALVKFKKYFPDHRSSEVAKSIARGRKFLKSIQRSDGSWYGSWGVCFTYG 108          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A7S2JAH8_9EUKA (Terpene cyclase/mutase family member n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JAH8_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 9.970e-30
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE LNPSE FGDIMIDYS VECS +SL A++ F    PHHRT E+K+++  GRRF+KSIQR DGSWYGSWG CFTYG
Sbjct:  672 YEWLNPSEVFGDIMIDYSYVECSMASLSAVYAFHQACPHHRTEEVKKAIAAGRRFIKSIQRADGSWYGSWGCCFTYG 748          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A699ZED3_HAELA (SQHop_cyclase_C domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZED3_HAELA)

HSP 1 Score: 108 bits (270), Expect = 2.780e-29
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 EALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTY 228
            E LNPSETFGDI++DYS VEC+ + + AL DF   YP HR+ E+ +++     F++SIQRPDGSWYGSWGVCFTY
Sbjct:   14 ELLNPSETFGDIIVDYSYVECTSACITALCDFRAAYPQHRSQEITKALDRAEAFIRSIQRPDGSWYGSWGVCFTY 88          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A7S3ADP3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ADP3_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 6.620e-29
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE LNPSE FGDIMIDYS VECS +SL A++ F   YP HR  E+ +S+  GR+F+KSIQR DGSWYGSWG CFTYG
Sbjct:  171 YEWLNPSEVFGDIMIDYSYVECSMASLSAVYAFHQAYPEHRKDEVVKSIAAGRKFIKSIQREDGSWYGSWGCCFTYG 247          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A482SSA2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSA2_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 1.170e-28
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE LNPSE FGDIMIDYS VECS +SL A+ DF   +P +R  E+K S+  GR FLKSIQR DGSWYGSWG CFTYG
Sbjct:  530 YELLNPSEVFGDIMIDYSYVECSSASLTAMRDFMQQHPDYRADEIKMSLTRGRIFLKSIQRKDGSWYGSWGNCFTYG 606          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A7S2EXQ9_TRICV (Terpene cyclase/mutase family member n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXQ9_TRICV)

HSP 1 Score: 116 bits (291), Expect = 1.200e-28
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YEALNPSE FGDIMIDYS VECS +SL AL DF +  P HR  E+  S+  GR+F+KSIQRPDGSWYGSW  CF YG
Sbjct:  594 YEALNPSEVFGDIMIDYSYVECSMASLTALADFRDHVPDHRREEIDASIARGRKFMKSIQRPDGSWYGSWACCFCYG 670          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A448YVA5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVA5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.640e-28
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE LNPSE FGDIMIDYS VECS +SL AL DFA  +P HR  +++RS+ +GR FLKSIQR DGSWYGSW  CF YG
Sbjct:  824 YEQLNPSEVFGDIMIDYSYVECSMASLTALADFAEHFPDHRADDIRRSIDKGRSFLKSIQRDDGSWYGSWACCFCYG 900          
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Match: A0A1E7F6P1_9STRA (Terpene cyclase/mutase family member n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6P1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.140e-28
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSMLEGRRFLKSIQRPDGSWYGSWGVCFTYG 231
            YE LNPSE FGDIMIDYS VECS +SL AL DFA  +P HR+ +++RS+ +GR FLK+IQR DGSWYGSW  CF YG
Sbjct:  470 YEQLNPSEVFGDIMIDYSYVECSMASLTALADFAETFPDHRSDDVRRSIEKGRSFLKNIQRDDGSWYGSWACCFCYG 546          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102744.585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8L9_ECTSI1.510e-3677.63Cycloartenol synthase n=1 Tax=Ectocarpus siliculos... [more]
L1K034_GUITC1.210e-3167.53SQHop_cyclase_C domain-containing protein (Fragmen... [more]
A0A7S2XZ52_9STRA5.010e-3066.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2JAH8_9EUKA9.970e-3070.13Terpene cyclase/mutase family member n=1 Tax=Hapto... [more]
A0A699ZED3_HAELA2.780e-2961.33SQHop_cyclase_C domain-containing protein (Fragmen... [more]
A0A7S3ADP3_9EUKA6.620e-2967.53Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A482SSA2_9ARCH1.170e-2868.83Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2EXQ9_TRICV1.200e-2868.83Terpene cyclase/mutase family member n=1 Tax=Trier... [more]
A0A448YVA5_9STRA1.640e-2868.83Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F6P1_9STRA2.140e-2867.53Terpene cyclase/mutase family member n=1 Tax=Fragi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102744contigH-fluviatilis_contig102744:29..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog55529.EKX53909
Preferred nameLSS
KEGG rclassRC00874,RC01582,RC02604
KEGG koko:K01852,ko:K01853,ko:K15811
KEGG ReactionR03199,R03200,R09689
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
GOsGO:0000250,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006722,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008299,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0010685,GO:0010686,GO:0012505,GO:0016020,GO:0016104,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016853,GO:0016866,GO:0019216,GO:0019218,GO:0019222,GO:0019748,GO:0031559,GO:0031647,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090181,GO:0097384,GO:0098827,GO:0106118,GO:1900579,GO:1900581,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG1657@1,KOG0497@2759
EC5.4.99.32,5.4.99.7,5.4.99.8
COG Functional cat.I
BiGG ReactioniMM904.YHR072W,iND750.YHR072W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.5644834-CDS-H-fluviatilis_contig102744:28..1191622929068.5644834-CDS-H-fluviatilis_contig102744:28..119Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102744 29..119 -
1691135170.7375877-CDS-H-fluviatilis_contig102744:28..1191691135170.7375877-CDS-H-fluviatilis_contig102744:28..119Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102744 29..119 -
1622929068.5778382-CDS-H-fluviatilis_contig102744:622..7621622929068.5778382-CDS-H-fluviatilis_contig102744:622..762Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102744 623..762 -
1691135170.7498465-CDS-H-fluviatilis_contig102744:622..7621691135170.7498465-CDS-H-fluviatilis_contig102744:622..762Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102744 623..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102744.585.1prot_H-fluviatilis_contig102744.585.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102744 29..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102744.585.1

>prot_H-fluviatilis_contig102744.585.1 ID=prot_H-fluviatilis_contig102744.585.1|Name=mRNA_H-fluviatilis_contig102744.585.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=77bp
YEALNPSETFGDIMIDYSCVECSCSSLVALHDFANMYPHHRTSELKRSML
EGRRFLKSIQRPDGSWYGSWGVCFTYG
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mRNA from alignment at H-fluviatilis_contig102744:29..762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102744.585.1 ID=mRNA_H-fluviatilis_contig102744.585.1|Name=mRNA_H-fluviatilis_contig102744.585.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=734bp|location=Sequence derived from alignment at H-fluviatilis_contig102744:29..762- (Heribaudiella fluviatilis SAG_13_90)
TACGAGGCACTCAACCCGTCGGAGACGTTTGGTGACATCATGATCGACTA CTCCTGCGTGGAGTGCTCCTGTTCGTCCCTCGTCGCTCTTCACGACTTCG CCAACATGTACCCCCACCACCGTACGTCGGAGCTCAAGAGGTGACGCTAA CGATGATGAACGGGGACTGTCTGATTGTGTGAAAAGGTCAAGAGGTGACG CTAACGATGACAAATGGTGATGATTATTATGCAAACAGAAGGACAAGAAG ACAGAGGGTGCTATTGACGAATTGCACCGGCTGTGTCGTGCCGATAACAT CAAGAAGATGTGCGCTTCCGATGAATTGCAACGATTGTTTCATGAACAGA AGACCGAGAAGAGATGGCGACAATGATGCATTGTGGACGATAGTTTGTAA AGGACTCTCCAGCGGAGGTTCAGAACGAAATTGCAGGTTGATTCGAATGT CCGATTCGATCAGAATTCTGAGTTTGTCTTATGCCTCGATGGAACCTTGA ATATTATGCCCACATCGAGAAAAAGCTGGCATTCGTGTTGTCGCAGCTCA CGTGGCGTTAGAAGGCGACGATACCGTTCTAGGTCTTGTTGGTTATCGGA TCGAAGAAGCGATGTGCTATCCTGTTGTTCGTATCCCGTGCAGATCTATG CTTGAGGGGAGGCGATTCCTGAAGTCTATCCAGCGTCCGGACGGCAGTTG GTACGGGTCATGGGGAGTCTGCTTCACCTACGGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102744:29..762-

>mRNA_H-fluviatilis_contig102744.585.1 ID=mRNA_H-fluviatilis_contig102744.585.1|Name=mRNA_H-fluviatilis_contig102744.585.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=462bp|location=Sequence derived from alignment at H-fluviatilis_contig102744:29..762- (Heribaudiella fluviatilis SAG_13_90)
TACGAGGCACTCAACCCGTCGGAGACGTTTGGTGACATCATGATCGACTA
CTCCTGCGTGGAGTGCTCCTGTTCGTCCCTCGTCGCTCTTCACGACTTCG
CCAACATGTACCCCCACCACCGTACGTCGGAGCTCAAGAGTACGAGGCAC
TCAACCCGTCGGAGACGTTTGGTGACATCATGATCGACTACTCCTGCGTG
GAGTGCTCCTGTTCGTCCCTCGTCGCTCTTCACGACTTCGCCAACATGTA
CCCCCACCACCGTACGTCGGAGCTCAAGAGATCTATGCTTGAGGGGAGGC
GATTCCTGAAGTCTATCCAGCGTCCGGACGGCAGTTGGTACGGGTCATGG
GGAGTCTGCTTCACCTACGGCATCTATGCTTGAGGGGAGGCGATTCCTGA
AGTCTATCCAGCGTCCGGACGGCAGTTGGTACGGGTCATGGGGAGTCTGC
TTCACCTACGGC
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