mRNA_H-fluviatilis_contig10274.584.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10274.584.1
Unique NamemRNA_H-fluviatilis_contig10274.584.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: D7G2V0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2V0_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 1.040e-93
Identity = 147/206 (71.36%), Postives = 171/206 (83.01%), Query Frame = 3 
Query:    3 RFASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLTQT------GVTGRFFRSGALSEW 602
            RFAS++E E+GRCDVLVNNAGIAFKGSDPTPF+ QA+PTL+TNFFDT AFTE+MLPL+RK   GRV+NVAS AG LSIL +Q  R AFT P LTKE+LS+MM+ FV DV+AGRH+  GWP+TCYGMSKLG+IAYT V AR+ERE+GS V  N+CCPGY  TDMTSH+GTLTPEEGARTPF+LTQ       G+TG FFR  AL+EW
Sbjct:   99 RFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMAGHLSILGSQDRRNAFTNPALTKERLSAMMAQFVGDVKAGRHQGGGWPNTCYGMSKLGVIAYTKVAARVEREAGSTVTINACCPGYCDTDMTSHRGTLTPEEGARTPFMLTQMKSVDEGGLTGEFFRKEALAEW 304
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S0XB88_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XB88_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.130e-59
Identity = 102/194 (52.58%), Postives = 139/194 (71.65%), Query Frame = 3 
Query:    6 FASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPF---VLTQTGVTGRFF 578
            F + ++++YG+CDVLVNNA IAFKGSDPTPF++QA+PT++TN+F T++ T+ MLPLL+     R++NVAS AG+L IL +   +K FT+  LT ++L+  M+ FV DV+  + +   WP +CYG SKLG+IA T VLAR   +    +L N+CCPGY  TDM+SH+GT T E GARTPF    LT   VTG+FF
Sbjct:   87 FVNKLQSDYGKCDVLVNNAAIAFKGSDPTPFKLQAEPTIKTNYFGTLSLTKLMLPLLQNSTSPRIVNVASQAGALGILPSNERKKFFTSESLTVDELTEAMNQFVNDVKNDKLKENDWPGSCYGTSKLGVIALTKVLARNYPD----ILINACCPGYCQTDMSSHRGTRTAENGARTPFYLATLTAGSVTGKFF 276
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S2UVT3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVT3_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.640e-57
Identity = 103/184 (55.98%), Postives = 132/184 (71.74%), Query Frame = 3 
Query:    3 RFASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLTQ 554
            RF  ++++EYGR DVLVNNA IAFKG+DPTPFQ QA PTL+TNF+ TV  T+ +LPLLR+    R++NVAS +G L IL+ +R +  F++  LT+  L  +M  F  DVQAG H   GWPSTCYGMSKLG+IA+T +LAR E      ++ N CCPG   TDM+S  G+ T EEGARTP++LTQ
Sbjct:   99 RFMQEMQSEYGRLDVLVNNAAIAFKGADPTPFQYQAAPTLRTNFWATVQVTDALLPLLRQSPAARIVNVASMSGHLRILSHER-QDIFSSSSLTRPVLYDLMRAFEADVQAGVHHQNGWPSTCYGMSKLGVIAFTKILAREE----PGMVVNCCCPGGCRTDMSSGSGSKTAEEGARTPYLLTQ 277
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S0F9Q4_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0F9Q4_9DINO)

HSP 1 Score: 204 bits (518), Expect = 9.150e-57
Identity = 106/202 (52.48%), Postives = 142/202 (70.30%), Query Frame = 3 
Query:    6 FASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLT---QTGVTGRFFRSGALSEW 602
            F   I ++YGR DVLVNNA IAFKG+DPTPFQ Q  PTL+TNF+ TVA T+++LPLLR+ +  RV+NVAS AG L  ++    R+ F++P LT+++L +++  F +DV AGRH  EGW ++ YG+SKL LIAYT ++AR   E G+A+ AN+CCPGY  TDM+SH+G  +P EGAR   +L      G TG F R   +SEW
Sbjct:  110 FVQYIASKYGRLDVLVNNAAIAFKGADPTPFQGQTLPTLRTNFWGTVALTDQLLPLLRRGRSPRVVNVASMAGRLGQVSGSLQRR-FSSPALTRDELFALVRKFQDDVAAGRHRQEGWGNSNYGLSKLALIAYTLLVAR---EEGNAMRANACCPGYCDTDMSSHRGPRSPAEGARNATMLALLRDDGPTGAFVRDMQISEW 307
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: K0SJD2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJD2_THAOC)

HSP 1 Score: 198 bits (504), Expect = 3.050e-56
Identity = 99/193 (51.30%), Postives = 129/193 (66.84%), Query Frame = 3 
Query:   30 YGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFV--LTQTGVTGRFFRSGALSEW 602
            YG+ DVLVNNAGIAFKGSDPTPF+ Q KPTL  NF+ TV FTE MLPLLRK    R++NVAS AG L  L ++  ++ F++PDLTK++L S++  F  DV +GRH   GW ++ YGMSKL LIA T + AR   E    +  N CCPGY ATDM+SH+G   P EGAR   +  + ++  +G +F    ++ W
Sbjct:    5 YGKVDVLVNNAGIAFKGSDPTPFEGQCKPTLAVNFWGTVDFTEEMLPLLRKGNDARIVNVASMAGHLGQLRSRGLQRKFSSPDLTKDELFSLVEEFQRDVLSGRHTEAGWGNSNYGMSKLALIAMTKIWAR---EEEGDISVNCCCPGYCATDMSSHRGNRHPSEGARNALIPAMMESAPSGEYFADFGIASW 194
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S2U7F4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7F4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.120e-55
Identity = 100/201 (49.75%), Postives = 127/201 (63.18%), Query Frame = 3 
Query:    6 FASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFV--LTQTGVTGRFFRSGALSEW 602
            F   +E  +G+ DVLVNNAG+AFKG+DPTPF+ Q KPTL  NF  T+ FTE+MLPLLRK    R++NVASG+G L  L ++  R  F+AP LT  +L+ ++  F  DVQ G+H   GW ++ YGMSKL LIA T VLAR   E    +  N CCPGY  TDMTSHKG   P+EGA+   +    +    G FF    + EW
Sbjct:   17 FRQQMEENFGKVDVLVNNAGLAFKGADPTPFKEQTKPTLDINFRGTINFTEQMLPLLRKGSDARIVNVASGSGHLGQLPSKELRDKFSAPSLTMPELNQLVDNFESDVQQGKHRETGWGNSNYGMSKLALIAATKVLAR---EEAPRIAVNCCCPGYCDTDMTSHKGHRHPKEGAKNAIIPATMEDPPYGEFFSDFKVGEW 214
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: K0TIM0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIM0_THAOC)

HSP 1 Score: 198 bits (504), Expect = 2.550e-53
Identity = 100/200 (50.00%), Postives = 132/200 (66.00%), Query Frame = 3 
Query:    6 FASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFV--LTQTGVTGRFFRSGALSE 599
            F + +   YG+ DVLVNNAGIAFKGSDPTPF+ Q KPTL  NF+ TV FTE MLPLLRK    R++NVAS AG L  L ++  ++ F++PDLTK++L S++  F  DV +GRH   GW ++ YGMSKL LIA T + AR   E    +  N CCPGY ATDM+SH+G   P EGAR   +  + ++  +G +F    ++E
Sbjct:   99 FIAGMTERYGKVDVLVNNAGIAFKGSDPTPFEGQCKPTLAVNFWGTVDFTEEMLPLLRKGSDARIVNVASMAGHLGQLRSRELQRKFSSPDLTKDELFSLVEEFQRDVLSGRHTGAGWGNSNYGMSKLALIAMTKIWAR---EEEGDISVNCCCPGYCATDMSSHRGNRHPSEGARNALIPAMMESAPSGEYFADFGIAE 295
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S1IHI8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IHI8_9EUGL)

HSP 1 Score: 188 bits (477), Expect = 3.610e-51
Identity = 102/206 (49.51%), Postives = 131/206 (63.59%), Query Frame = 3 
Query:    6 FASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTA----PDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLT---QTGVTGRFFRSGALSEW 602
            FA  ++ +YG  D LVNN  IAFK  DPTPFQ QA+PTL TNFF TVA  + ++PL+RK   G ++NVAS AG L      R+  A TA    P L++++L ++M  FV DV+AG H   GWP TCYG+SK G+IA+T +LAR  +  G AV  +S CPGY ATDM+SH G  +P +GA T   LT   Q G TGRF+      +W
Sbjct:   80 FAHQLQAQYGGIDALVNNGAIAFKAKDPTPFQQQARPTLHTNFFGTVAVCDALVPLIRKG--GCIVNVASIAGCLG-----RYSPALTAKLTDPQLSRQELGNLMDQFVVDVEAGAHRQAGWPDTCYGVSKCGVIAFTRILARELQPKGVAV--HSMCPGYCATDMSSHGGPRSPAQGADTAVFLTLNPQAGATGRFWYERRPYDW 276
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A836C9X3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.750e-51
Identity = 99/208 (47.60%), Postives = 132/208 (63.46%), Query Frame = 3 
Query:    3 RFASDIETEY-GRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFTAPD----LTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLTQ---TGVTGRFFRSGALSEW 602
            RFA D E E+    D LVNNAG AFKGSDPTPF  QA+PT+  NFF TVA TER+LPL+++   GR++NVAS +G L I+     R  F +      L  ++L  +   FV+DV+ G+H+ +GWP++CYGMSKL LIAYT +LA  E      +  N+CCPGYVATDM+  +G   P++GA TPF+L      G +G F+      +W
Sbjct:   70 RFAKDAEQEFTAGIDALVNNAGFAFKGSDPTPFAEQAEPTMDINFFSTVATTERLLPLVKRSPHGRIVNVASMSGHLRIVPDAELRAKFASAGQPGGLGHDELMLLARGFVQDVKEGKHKEKGWPNSCYGMSKLCLIAYTKILAARE----PTLKVNACCPGYVATDMSGQQGHKRPDQGALTPFMLATGALDGTSGGFWSDEKRIDW 273
[Close]
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Match: A0A7S3GV84_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV84_9STRA)

HSP 1 Score: 187 bits (475), Expect = 5.220e-51
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 3 
Query:    3 RFASDIETEYGRCDVLVNNAGIAFKGSDPTPFQMQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQRWRKAFT-APDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIAYTNVLARLERES--GSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLT------QTGVTGRFFRSGALSEW 602
            RF+ DI  EYG  D+LVNNA IAFK SDPTPF+ Q  PT++ NFF T+  TE ++PLL+K +  R++NVAS +G L IL ++  ++ F   P +  + L ++++ +V  VQ G H  +GWP++ YG+SKL +IA T +LA+ E E+  G   L N+CCPGY  TDMTSHKG    E GARTP +L           TG+FF   A  EW
Sbjct:   67 RFSRDISDEYGHVDILVNNAAIAFKESDPTPFKEQTLPTIEPNFFGTMRITESLMPLLQKAESPRIVNVASQSGHLRILKSEELKERFVNCPSI--DALENLVNEYVSSVQDGTHTEKGWPNSNYGISKLAVIALTRILAKREAEANPGKNFLINACCPGYCDTDMTSHKGPRPAEHGARTPAMLALLSEVGPVAPTGKFFFDEAEVEW 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10274.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2V0_ECTSI1.040e-9371.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0XB88_9STRA3.130e-5952.58Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2UVT3_9STRA6.640e-5755.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0F9Q4_9DINO9.150e-5752.48Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
K0SJD2_THAOC3.050e-5651.30Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2U7F4_9STRA1.120e-5549.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0TIM0_THAOC2.550e-5350.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1IHI8_9EUGL3.610e-5149.51Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A836C9X3_9STRA3.750e-5147.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GV84_9STRA5.220e-5146.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10274contigH-fluviatilis_contig10274:22..5924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue2.2e-61
Seed eggNOG ortholog2880.D7G2V0
KEGG rclassRC00154,RC00205,RC00823,RC01491
KEGG koko:K00079
KEGG ReactionR02581,R02975,R04285,R09420
KEGG Pathwayko00590,ko00790,ko00980,ko01100,ko05204,map00590,map00790,map00980,map01100,map05204
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.1.1.184,1.1.1.189,1.1.1.197
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size1953
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10274.584.1prot_H-fluviatilis_contig10274.584.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10274 1180..4576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.4577541-UTR-H-fluviatilis_contig10274:21..1211622929068.4577541-UTR-H-fluviatilis_contig10274:21..121Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 22..121 +
1691135170.643289-UTR-H-fluviatilis_contig10274:21..1211691135170.643289-UTR-H-fluviatilis_contig10274:21..121Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 22..121 +
1622929068.4704177-UTR-H-fluviatilis_contig10274:1178..11791622929068.4704177-UTR-H-fluviatilis_contig10274:1178..1179Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 1179..1179 +
1691135170.6556907-UTR-H-fluviatilis_contig10274:1178..11791691135170.6556907-UTR-H-fluviatilis_contig10274:1178..1179Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 1179..1179 +
1622929068.5355985-UTR-H-fluviatilis_contig10274:4576..59241622929068.5355985-UTR-H-fluviatilis_contig10274:4576..5924Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 4577..5924 +
1691135170.7281373-UTR-H-fluviatilis_contig10274:4576..59241691135170.7281373-UTR-H-fluviatilis_contig10274:4576..5924Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10274 4577..5924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.479421-CDS-H-fluviatilis_contig10274:1179..12591622929068.479421-CDS-H-fluviatilis_contig10274:1179..1259Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 1180..1259 +
1691135170.6684055-CDS-H-fluviatilis_contig10274:1179..12591691135170.6684055-CDS-H-fluviatilis_contig10274:1179..1259Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 1180..1259 +
1622929068.4914055-CDS-H-fluviatilis_contig10274:2403..25081622929068.4914055-CDS-H-fluviatilis_contig10274:2403..2508Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 2404..2508 +
1691135170.6780214-CDS-H-fluviatilis_contig10274:2403..25081691135170.6780214-CDS-H-fluviatilis_contig10274:2403..2508Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 2404..2508 +
1622929068.505233-CDS-H-fluviatilis_contig10274:2858..29821622929068.505233-CDS-H-fluviatilis_contig10274:2858..2982Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 2859..2982 +
1691135170.6878362-CDS-H-fluviatilis_contig10274:2858..29821691135170.6878362-CDS-H-fluviatilis_contig10274:2858..2982Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 2859..2982 +
1622929068.5150244-CDS-H-fluviatilis_contig10274:3522..35831622929068.5150244-CDS-H-fluviatilis_contig10274:3522..3583Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 3523..3583 +
1691135170.7046645-CDS-H-fluviatilis_contig10274:3522..35831691135170.7046645-CDS-H-fluviatilis_contig10274:3522..3583Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 3523..3583 +
1622929068.527262-CDS-H-fluviatilis_contig10274:4442..45761622929068.527262-CDS-H-fluviatilis_contig10274:4442..4576Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 4443..4576 +
1691135170.717279-CDS-H-fluviatilis_contig10274:4442..45761691135170.717279-CDS-H-fluviatilis_contig10274:4442..4576Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10274 4443..4576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10274.584.1

>prot_H-fluviatilis_contig10274.584.1 ID=prot_H-fluviatilis_contig10274.584.1|Name=mRNA_H-fluviatilis_contig10274.584.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=168bp
MQAKPTLQTNFFDTVAFTERMLPLLRKRKKGRVINVASGAGSLSILATQR
WRKAFTAPDLTKEQLSSMMSTFVEDVQAGRHESEGWPSTCYGMSKLGLIA
YTNVLARLERESGSAVLANSCCPGYVATDMTSHKGTLTPEEGARTPFVLT
QTGVTGRFFRSGALSEW*
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mRNA from alignment at H-fluviatilis_contig10274:22..5924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10274.584.1 ID=mRNA_H-fluviatilis_contig10274.584.1|Name=mRNA_H-fluviatilis_contig10274.584.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=5903bp|location=Sequence derived from alignment at H-fluviatilis_contig10274:22..5924+ (Heribaudiella fluviatilis SAG_13_90)
AGCGATTCGCATCGGATATCGAAACGGAGTACGGGCGATGCGATGTTCTG
GTGAACAATGCGGGGATCGCGTTCAAAGGCTCGGACCCTACGCCATTCCA
GTAAGCAACCGTAGGGTAGCGTAGGGCAGGTTTCGTTTCGCGCGAAATGG
GGTTGCGCTTCAAGAGAGTGTGTGGACTCGATCGATCTGATGAGTATCGT
ATCAGACGGTTTTTACCAAGTAATACTGCGACTGTTTGTTGTGGGGCGTC
CGAGCACCGAGGAAACGAACATTCTTGACCCTTCAGCTCAGCGGTAACCT
CTTGATGTTTGATTGCTGTGCTGTGTTTTACGCGGAACTATTAGATGCAA
ACTGTACGTGACGAGAAGTAATACTCGTTTCTTTTGAATATTGAGAGTCT
GCTTTTGTGGAACGGAGCACGACGCACAACCCAGAGTAGACCGCCCTGTC
CCCCAGTTCATCACGGATAGTGTATTGCTCGATTAGCGCAATGAAGTGTT
GAGCCGCGGATTGGATTATGTTGTGCCGCAATACCTATGGCTTAGCATTG
TCGGATTCATTTGAACACAGTGTGTTCTTCAGCGGTTCTGATCGGAGAAC
TGGCGGTGTGCGAGAATTATCCTTTCGTCTTTGTGCTTAAATAGATGCTG
ATAACATGTCGTATTTTGTCAATGGACGTGATTCTGCCGCTGTTAAGGAC
GGCTGAAGCGCGTTGTGTTTTCATGCACAAGGAAGAAGCTGGGTGCGAGA
AGTGATCTTGTGTTACTAGACTGCAAGATTTCCTGCTGCCCCCTTACACC
CCCTCCCCCGTCATCTCGTCTGCCGCATTCGACTCCGGGGTGTGGGTAAT
ATCACAGGAATTTGCATCCGACATCATCCCTGCTCCGACATCACTCCTTC
ACATTTGAAATCTTTCAGACGTGACGTTAAAATCTCTCGCGTACATACAA
GCATTTGAACCTTCATCGTACGCGTACAAATATCCAATGTTCAGAGATTC
AATCCACGACGGATTTGGTCTTCCGTCTGCGATTCGGTGTGTATGTGCTG
CGCCGAATGTGAACGTGTACCGTTTTTTGGTGAGCGTGAATTTATTACAT
CTGCTTTCAACACACTAATTCTTCATCTTGGGGTGTGTGCAAACAAATGA
CGAGCAGGATGCAGGCGAAGCCTACTTTGCAGACGAACTTCTTCGACACC
GTTGCTTTCACCGAGAGAATGCTTCCGCTTCTCAGAAAGTAAGTGCTGGT
CGTCGGCATCGCCCTTCACGAAGGGATGGAAAAAGTATCAAACACACACT
TGCGGCTGCTTCTCTTTGTTGGATGTCCTCGAACCGAGCTAGGTTTTGTC
GGATTGTCCGGGTTTGCTTTCGGAGACTGCAATCCTCCTGAGCATGCCAC
GCCTCCAATTTGTGAAGAGGATGTTTTGGTGACTACCTGAGGATTTTTTA
TAGTCTTCTTCAGTTTCTTCCTCGAATTTATTATAAGAGGGAGCAACTCT
TCGATAGGATCGGGACTATTCGTTGCACAAAGCATCCGCATCAAGATTGT
TTGTGCACACCGCGCTGTTGCTTACGCTGTACTTTTGCAAATGATGCGCT
CTCATTTGCACGGTGCGCACTCAAACTCGACCGCATATGATAACGTCGTT
CGCAACACATCATGTTACCTTGCGTCCTTCTCTGCTGGCTGACGTCCCCT
ACCACAGACTACGATCACGACGACGACATCAAAAGTACAACGGCAACGGC
ATTATGTACCGACAACCAAAAACCACGCGTATCAGGCGGTATTTAGTTTG
TTTCGGGAATCTCGTACGAAGCAGCTGACAGAAAGCTCTTGATATTCTCG
ATCGTGAATCTACCGCCGCTTTTATAATGACCACGAAAGCATCACACTAT
TGGTCGTATGCATGCCCCCATCCGGCCTGATTGTTAGCACACGGACATGC
CATGTATCCATGTTCCTGCCGCTTTTGTTTTGCCTATAGGCAACGATTCC
TTGTCCGCTACCCGGTCAACCGGCCGGCTGTCTAATGGAAGGTGCCATGC
CCACGATAAGGGGCGTTGCAGCTTTTTGCGCGGTGAGGGCCAGCCGTCCC
ACTCGCTCGTTAATGTTGGCAGGGTTCGACGGGTTCTTGGTAATCCGCGG
ACATCATGTGGCGGCTAGCTCTTCTGCAGGCCGTTTGCCGCTCACCATTT
CCATTTCTCAAGCATTCAGTTCACGTTTTGGAAGCAGAACATGGCATTGT
ACGGGGATTTGAACCCGCAACCTCTCCAGTCACGTCGGATCGTTAATACA
CCCTTTCGGCGACTTCCCACAAGGGGGTACTGTCCTCGCGATCCACTCCA
TGAATGACACGTTCTGATGTGTCATGCTCCAGGAGAAAGAAAGGACGGGT
GATTAATGTGGCGAGCGGGGCCGGCAGCCTATCCATTCTCGCCACGCAGC
GTTGGAGGAAGGCGTTCACCGCCCCCGACCTCACCAAGTGAGAGCAATAG
CCTCGCCCGCTTATTTTACCACAAGATTTATTGGGTCGTTCGCTGCATAG
TCGAGGCAATGATTGTCGCCGCGGGGGTCACAAGGCCAGCCTCTCCCTCT
CTCGTCATATCGCCGTGTACAGGGGTGCAGCTTGTTGTTGTTGTCGATGT
GTTTGTGGTTGAGCATTTAGGATTATTTTGTGTGCTAGCGAGAACGATCG
ATGTGCACGTATTTTTTGTGGTAAATTGATCATTGAAATTGCGTTTTGAG
TGTTTTTTGCTACTCCTGTGGTTGCTCTTCCCTTGCTAGCATAGCATCAT
TTTTACGATCGCCTGACACGTACATACATGAAAACAGGGAACAATTGTCT
AGCATGATGAGCACGTTTGTGGAGGATGTTCAGGCGGGCAGGCACGAGTC
TGAAGGATGGCCCAGCACATGCTACGGTATGAGCAAGCTTGGCCTCATCG
CCTACACCAATGTGAGTACGCTGCCGTACACGTGACGATATCCCGCCCTG
CCTCCTATTTCCCGCATACACCATGTACACGTCAGATTAAGGGTAACGTG
CCGCTCCTTATTTCACCCAAGTACGACGACAATCGGAGACCTTTGGCCAT
GTGGGAAAATCCGAACCGTCCAATTATGGCGGCGCATGCTGGCTCGTGAA
AGCGTATTGCAACAGCTGAACGCACCGTCGATAACGTGGACTGCTGCCTG
ATTCGCCGCGGTCTCAACTCATTCCCTGCACGGTAACGCTTGGGCGACTG
TCGGATCTGCGTTTGCTGTTACATCCCCTTCCCTCGCCGAACTCGGCTAG
CCATCACAGCACATGTTGTTTTTTTTCTTCAAAGTGGCCAAACCGCAACA
ACGTTATGACAGTGTGGACGACTCTTTCCTCGCACAGGAACAACGTGCGG
TCGTCAAAGCGACAACGGGGCCGTTTTCCTGCTTTGTCGGACGAACCGCT
AGGTCGCACTATTGCTCTGTCGTTTCGTTTTAATGTCGAATGTGTGGGCA
GGTTTTGGCTAGATTGGAGAGAGAATCTGGATCTGCCGTATTGGCGAACT
CGTGTTGTCCAGGTGAGGCATATTTCATGATCTCCGTATGATACCCCGTA
TCTCAATATAGCCTCACCTGACTCACCCCCCCGGCTACTTTAGCTTATGC
CACGGGCGACCATGTAACGCGTTGATGTTGTTGTGGCGAGTGAAAGACGG
GAATAGGTGGCGTGAGAATGCCGTTTATTGTGTGCATGGCTCGTCCGTCG
GGAGACCACCTGGCTCTCCCGGTACAGGACCTGAGATTCTGGCCACCGCG
AGTCATAATTCATGCCCGAGTAAACCTACATGCCCAGCACACTGTACGGG
CTACTTTCCACGAAGTTGATTGCCAGTACGTCGCATGTACAACAAGTAGC
GAAGAGTTTCAAATGCCCCTTATTCTCCTTTCCCCCCCCCCTTGAACTTG
AAGATACTCAACTTCAGAACTCCGATTGTTTGGTACGAGACGTATACTCC
ACAAAGTTGAGCGATAGATGCAGGTGCTCGACTACCTCCCCTTGCACATC
ATTGTGTCCTCCCCTACGAATCCTTATGCCAGCATCAGAGGCCTTAGGGC
AGGCCCTGCAGAGGCGATTGCTGTCCAGTTTTGCGGATCTTTTCAAGTAT
GCGATATCGTTAAATCCAGCTCCAACTTTCCAAAGTTTTCGACGTGAACA
TTTTGGAATGTGTTTATGTCGGAAACGTGGGAAAGTCAATCTGCAGTGAC
AATTTCATCGCGATTTCCACTTTTTTCGATCCAAATATGTGGGAAAATCT
CTTCGTTGGGTCCGGGCCTTCATCGGGAAACCTTAGGTGAAAATGCCACG
CCCCCGCTTACCCCGCTCACCCCGCTCAAGCCTCGTAAAACCCATCTCAC
GCATTTCCCTGCGATAAGCAGGCTATGTCGCCACCGACATGACATCGCAC
AAGGGTACACTGACACCTGAGGAGGGCGCAAGAACTCCTTTCGTGCTTAC
GCAGACAGGAGTAACGGGAAGGTTCTTCAGATCGGGAGCTCTCTCGGAGT
GGTGATAAGTCACTCGCTCTCATTTTTTCTCGACACTTGTACAGCTACAG
TTTGCCGAGGAGTGACAGCAGATTTTCGTTTTGTCCCTATCATTGGAATG
GAGAACATTCTTCCTGATTATTCGCCGTGGTTTGACGCGCTCGGCATGCG
CTTGACGCGTGGTGCTACAGCCAACCCTCGCCCCAGTTGGGTCGAGACGA
CGTCGGCGTTTCCACAGTCGTAGTCATCCTCCTACTTCGCAGGAATAGGG
ACGGAGGGTACACGTAGATGACGACATCAAGCAGACAGCAAGTATGGCGG
ACGTAGGAAGGAAAGCAGAACAACACAGACGGTACCAATGTCATGCATGC
TGCCGTGACCTCTATCTGAAGTTTGACGTGGGGTTCTTACGCTCGGTGTG
CTGGAGTTTCCGTGAAATTGCTCCCATGTTCCCTCCTGCCATATATTGCC
ACCTAAACCGGGCCAGCGAGTGAAGCTTAATGGTATCCTCGTTGCTACTC
TAAGGTGTGCTTACTCCCAGCGACTTGCTTAGCTCGTAGTCGACGATCTA
CAGACGACCAATGGGAGGTGGAGTAAACTAGCGGGGATGCATCGCTGACC
AGCTAACATTCGCTTTCCGACGTGCGGCCTAACACCTTATTCTTCACGTA
GTGGTCGCTTTGTCCCAGTATACCGCTTGGCTCATGCACGTTACAGCTCA
ACGATCATGGTCGCTGAGGAAACAAACATATAGTCTACATCCACGGTCGC
TACGTCGCTACGGTCTTCACGACCATGATAACGACTGATGAAATCGTACG
GGCTCCTCGGAAGTGTTTGAAAACAGCTGGTCAGGATGGTTGCAAAAGGC
TGGTTGGTGTAATATGGACAGGCGGGTCGGTGCGAACGCTGCTTGGGAGG
GTCTACTTTTACGAATGATCTTGTCTCCGGGCGATGCTATCAATCCGGCA
AACTGCTCAAGCCATTGTAGCATTCTTCACACGACGGCCACGATCAGCCG
TGCGAACGGCTCTTTTTGTGTCCGACCTTGGGATCATGTGGTGTTGCGGA
ACGTGATGGGATCGTTCTTGTTTAGGTTGACACAAACGGTAATACCCAGT
TCGTTGTTATTTTTCGTTTCAGCCGACAGCACCTTCATACTTGTTTCAGG
GACGGTTGGTGTTGAACGGATGCTTTGTGCACTCGCAACGAACAAAACGT
GTTTGGGCTCGCATTGATGCACCAATGTAACTTGTGTTCAAAATACACGG
GGCGTCTTGTCCCTCGTTTTTCAAGGGCCTTGGGCAGTGTGTAGAGCTTA
GGCGCTGTGTTGCGTGTTTGTGTGTCCCCATGTTGCATATCGCGCGAAAC
AAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10274:22..5924+

>mRNA_H-fluviatilis_contig10274.584.1 ID=mRNA_H-fluviatilis_contig10274.584.1|Name=mRNA_H-fluviatilis_contig10274.584.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1008bp|location=Sequence derived from alignment at H-fluviatilis_contig10274:22..5924+ (Heribaudiella fluviatilis SAG_13_90)
ATGCAGGCGAAGCCTACTTTGCAGACGAACTTCTTCGACACCGTTGCTTT
CACCGAGAGAATGCTTCCGCTTCTCAGAAAATGCAGGCGAAGCCTACTTT
GCAGACGAACTTCTTCGACACCGTTGCTTTCACCGAGAGAATGCTTCCGC
TTCTCAGAAAGAGAAAGAAAGGACGGGTGATTAATGTGGCGAGCGGGGCC
GGCAGCCTATCCATTCTCGCCACGCAGCGTTGGAGGAAGGCGTTCACCGC
CCCCGACCTCACCAAGAGAAAGAAAGGACGGGTGATTAATGTGGCGAGCG
GGGCCGGCAGCCTATCCATTCTCGCCACGCAGCGTTGGAGGAAGGCGTTC
ACCGCCCCCGACCTCACCAAGGAACAATTGTCTAGCATGATGAGCACGTT
TGTGGAGGATGTTCAGGCGGGCAGGCACGAGTCTGAAGGATGGCCCAGCA
CATGCTACGGTATGAGCAAGCTTGGCCTCATCGCCTACACCAATGGAACA
ATTGTCTAGCATGATGAGCACGTTTGTGGAGGATGTTCAGGCGGGCAGGC
ACGAGTCTGAAGGATGGCCCAGCACATGCTACGGTATGAGCAAGCTTGGC
CTCATCGCCTACACCAATGTTTTGGCTAGATTGGAGAGAGAATCTGGATC
TGCCGTATTGGCGAACTCGTGTTGTCCAGGTTTTGGCTAGATTGGAGAGA
GAATCTGGATCTGCCGTATTGGCGAACTCGTGTTGTCCAGGCTATGTCGC
CACCGACATGACATCGCACAAGGGTACACTGACACCTGAGGAGGGCGCAA
GAACTCCTTTCGTGCTTACGCAGACAGGAGTAACGGGAAGGTTCTTCAGA
TCGGGAGCTCTCTCGGAGTGGTGAGCTATGTCGCCACCGACATGACATCG
CACAAGGGTACACTGACACCTGAGGAGGGCGCAAGAACTCCTTTCGTGCT
TACGCAGACAGGAGTAACGGGAAGGTTCTTCAGATCGGGAGCTCTCTCGG
AGTGGTGA
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