mRNA_H-fluviatilis_contig10271.581.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10271.581.1
Unique NamemRNA_H-fluviatilis_contig10271.581.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.070e-89
Identity = 164/219 (74.89%), Postives = 182/219 (83.11%), Query Frame = 1 
Query:    4 GYKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVF-PDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALA 657
            GYKLRSTLLSQAKAFVEARHEANK  LVKRLDAEKW QADVTPERQA+LDRLSSG+VF P  + ++    +G+ G+ + G   Y NG  R+ GD P QP+FV   R G RKGGR ERRREAVV G S+KAVGSALLV+EM+ NFL FA  FP IGTD+LTR+GELLRVFNSRATQLVLGAGAIHS AKLKSISAKHLALCSQSLGLVRSL+PFLKAAL+
Sbjct:  683 GYKLRSTLLSQAKAFVEARHEANKQTLVKRLDAEKWTQADVTPERQAVLDRLSSGQVFRPSVSAANANGTDGKEGSGAGGGSGYDNGGLRLPGDPPAQPNFVGGARSGGRKGGRAERRREAVVGGASFKAVGSALLVAEMSANFLQFADHFPTIGTDILTRLGELLRVFNSRATQLVLGAGAIHSTAKLKSISAKHLALCSQSLGLVRSLIPFLKAALS 901
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A6H5LD30_9PHAE (Vps54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD30_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 6.350e-65
Identity = 121/181 (66.85%), Postives = 135/181 (74.59%), Query Frame = 2 
Query:  719 DFRDHRDKIFGKFVSMIEEHIESRASSLRLTDWDAPGA--------------PAGGTELGEVEGGASXXXXXXGGEPCQFTADLRKGVTAMHNVLQQQLPPDQLQAIFRRIFTVITRKVPACFDREGVSPSTAAGRQRILDDIGFVCAALSTLRGVDASTLGLEQAIADRYGKPIGGGGGG 1219
            D+RDHRDKI  KFVSMIEE IE+R+ +L+LTDWD PG                              XXXXXX  +PCQFTAD+RKGVTAMHN+LQQQLPP+QLQA+FRR+F VI RKVPACF REGVSPSTAAGRQRILDD+ F CAALSTLRGVD+STLGLEQAIA+ YGK I G GGG
Sbjct:  100 DYRDHRDKILTKFVSMIEELIEARSGTLKLTDWDTPGGGXXXXXXXXXXXXXXXXXAAAAXXXXXXXXXXXXXXADPCQFTADVRKGVTAMHNILQQQLPPEQLQAVFRRMFAVIPRKVPACFQREGVSPSTAAGRQRILDDVDFACAALSTLRGVDSSTLGLEQAIAEIYGKGIDGTGGG 280
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S2S5D4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5D4_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.890e-53
Identity = 118/237 (49.79%), Postives = 148/237 (62.45%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVF-PDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            Y LRSTLL+QAKAF+E +HEA   +LV  LD+EKW QADV+ ERQA LDRLS+G+ F P S                     Y    ++ S                 R  G      EA+V+G+ YK V S LL+ EM ++ L  AA FP + TDVL R+ EL+R+FNSRATQLVL AGAIHSAA+L  I+AKHLAL SQ LGLV +L+P ++AAL+++LP KHHLLLA +D V Q
Sbjct:  100 YGLRSTLLAQAKAFLEHKHEAQLASLVATLDSEKWAQADVSSERQAALDRLSNGQAFLPRS---------------------YPKLQTQTSXXXXXXXXATLQSSSAKRAKGTKREVGEAMVEGSRYKVVWSVLLLMEMVMSLLATAAHFPMLATDVLQRIVELVRLFNSRATQLVLQAGAIHSAARLTKITAKHLALTSQCLGLVMALLPHIRAALSAQLPPKHHLLLADLDRVKQ 315
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S2FL57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL57_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.290e-50
Identity = 114/239 (47.70%), Postives = 152/239 (63.60%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDL--PVQPSFVADDRLGARKGGRGERR-REAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            Y LRST+L+QAKAF+E + E    +LV  LD+EKW QADV+P+RQ  +DRLSSG+ F   T  + T+                  ++  +G++  P +    A       +GGR  R   +A VDG+S+K V S LL+ EM    L  AA FP + TDVL RV EL+R+FN+RATQLVL AGAIHS A+L  I+AKHLAL  Q LGLV +L+P ++A+L+++LP KHHLLL+ MD V Q
Sbjct:   86 YALRSTMLAQAKAFLEHKQEVQMASLVATLDSEKWTQADVSPQRQQAIDRLSSGQAFLPGTLVTPTNKPNDHXXXXXXXXDNPVAATAAAGEVKRPSETEGRAVTTGRTDRGGRSRRELNDASVDGSSFKVVWSVLLLIEMVTAHLAIAAHFPMLATDVLQRVVELVRLFNTRATQLVLLAGAIHSTARLTKITAKHLALTCQCLGLVMALIPHVRASLSAQLPPKHHLLLSDMDRVKQ 324
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.280e-45
Identity = 112/238 (47.06%), Postives = 146/238 (61.34%), Query Frame = 1 
Query:    1 TGYKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            +G KLR TLL+Q KA+VE  H+ANKT LV           DV+PERQA++D ++ G V   +   S              + A  NG+S  +   P                   +R+REA+++G  YKAV S LL+ EMA N L  AA FPA   DVL R+ ELLR++N+R  QLVLGAGAI SA++L+SISAKHLALC+ SLGLVR+LVP ++AA A+ LP+KH LLL +M+ VSQ
Sbjct:  647 SGSKLRVTLLNQTKAYVECHHDANKTKLV-----------DVSPERQAMMDHITGGHVLSHALAPSH-------------LAASMNGASPAAAFAPQSTRSK-------------DRKREALLEGARYKAVWSTLLLVEMAYNQLRMAAYFPAAAPDVLGRLSELLRLYNARTMQLVLGAGAIQSASRLRSISAKHLALCAHSLGLVRALVPHMRAAFAAHLPRKHQLLLVEMERVSQ 847
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S1VEE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEE6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.680e-43
Identity = 103/234 (44.02%), Postives = 144/234 (61.54%), Query Frame = 1 
Query:   13 LRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            LR+TLLSQAKAFVE +HE+N +A+   LD+E+W Q DV+ +RQA L RL SGR    S RSSTT   G   T                                       ++  EA V+G  YK V S+L + EM +  ++ AA F ++ T+V+++V ELLR+FNSR+TQLVLGAGAIHSAA+LKSI+AKHL+L +Q LG+  +++P ++AAL ++LP K H LL  +D++ +
Sbjct:  252 LRATLLSQAKAFVERKHESNMSAMAAALDSERWTQCDVSADRQAQLTRLCSGRAVTSS-RSSTTRPGGASST---------------------------------------DKSPEADVEGVRYKVVWSSLFLVEMVMMNIDCAAHFQSLATNVVSKVSELLRLFNSRSTQLVLGAGAIHSAARLKSINAKHLSLVTQCLGMTIAILPHVRAALMAQLPPKQHNLLTDLDSIKK 445
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S2NWP7_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWP7_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.390e-43
Identity = 111/234 (47.44%), Postives = 147/234 (62.82%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTV 708
            Y LRSTLL+QAKAFVE +HE +  +L   LD+EKWVQ  V+PERQA + RL SGR     ++SS        G ++    A    + R S ++                 GR E   EA V+G  YK V S LL+ EM ++ + FAA F  + ++++ +V ELLR+FNSR TQLVLGAGAIHS AKLKSI+AKHLAL SQ LG++ S++P ++AAL ++LP K H LLA +D V
Sbjct:  597 YGLRSTLLAQAKAFVERKHENHMASLASALDSEKWVQISVSPERQAAIARLYSGRAALSRSKSSQ-------GNLATLKTAESINNKRSSVNI---------------SSGRRELV-EAEVEGKKYKMVWSCLLLVEMVMSNIAFAAHFQTLASNIVGKVSELLRLFNSRTTQLVLGAGAIHSTAKLKSINAKHLALVSQCLGMLTSILPHVRAALMAQLPTKQHTLLADLDRV 807
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S2XS08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS08_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.450e-43
Identity = 111/241 (46.06%), Postives = 146/241 (60.58%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRV-----FPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            Y LRSTLL+QAKAFVE +HE+N   L   LD+E+W Q DV+ ERQA L RL SGR      F   T SS+T+      T S  V    NG+ +                        G++  +A V+G  YK V S LL+ EM ++ +  AA F  + T+V+ +V ELLR+FNSRAT LVLGAGAIHSAA+LKSI+AKHLAL +Q LGL  S++P ++AAL ++LP K H LL  +D + +
Sbjct:  648 YGLRSTLLAQAKAFVERKHESNMANLAAALDSERWTQCDVSTERQASLIRLCSGRAVLSYTFGGDTPSSSTTTNVNNATTSTTV----NGTPKKD----------------------GKKLADAEVEGIRYKVVWSCLLLVEMVMSNVACAAHFQTLATNVVGKVSELLRLFNSRATTLVLGAGAIHSAARLKSINAKHLALVTQCLGLFISILPHVRAALMAQLPSKQHTLLGDLDKIKK 862
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: A0A7S4IYI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYI4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.660e-42
Identity = 106/237 (44.73%), Postives = 137/237 (57.81%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGR-VFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQ 714
            Y LRSTLL+QAKAFVE RHE N   LV  LD E+W Q DV+ ERQA L RL SGR V   STRS                     G        P +   ++D                A V+G  Y+ V S LL+ EM +  +  AA F  + T+ + +V ELLR+FN R+TQLVLGAGAIHSAA+LKSI+AKHLAL +Q L LV +++P ++AAL ++LP K+H LL  +D + +
Sbjct:   83 YGLRSTLLAQAKAFVERRHEGNMAGLVAALDGERWTQCDVSAERQAALTRLCSGRAVLSTSTRS---------------------GGDDFEKPAPTEKGKMSD----------------AEVEGKRYRVVWSCLLLVEMVMGNVACAAHFQTLATNAVGKVSELLRLFNQRSTQLVLGAGAIHSAARLKSINAKHLALVTQCLDLVVAILPHVRAALMAQLPSKNHALLVDLDKIKR 282
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BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Match: B8C131_THAPS (Vps54 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C131_THAPS)

HSP 1 Score: 168 bits (426), Expect = 5.690e-42
Identity = 105/234 (44.87%), Postives = 149/234 (63.68%), Query Frame = 1 
Query:    7 YKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALLDRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPSFVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAARFPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALCSQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTV 708
            Y LRSTLL+QAK+FVE +HEAN + LV  LD+E+WVQ  V+ +RQA L RL SGR        + TS +   G++ N                      +A   +G   GGR ++  +A V+G  +K V SALL+ EM ++ +  AA F  + T+V+ +V ELLR+FN+RAT LVLGAGAIHSAA+LKSI+AKHLA+ +Q +G+V +++P ++AAL ++LP K H LL  +D +
Sbjct: 1020 YGLRSTLLAQAKSFVERKHEANMSTLVAALDSERWVQCTVSADRQAALTRLCSGRA-------AFTSRKPAAGSIDN----------------------IASPSVG---GGR-DKMTDAEVEGVRFKVVWSALLLLEMVMDDVACAAHFQTLATNVVGKVSELLRLFNTRATHLVLGAGAIHSAARLKSINAKHLAIVTQCIGIVLAILPHVRAALMAQLPAKQHSLLHDIDKI 1220
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10271.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A0_ECTSI1.070e-8974.89Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A6H5LD30_9PHAE6.350e-6566.85Vps54 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2S5D4_9STRA6.890e-5349.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FL57_9STRA3.290e-5047.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YJU9_9STRA1.280e-4547.06Vacuolar protein sorting-associated protein 54 (Fr... [more]
A0A7S1VEE6_9STRA1.680e-4344.02Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2NWP7_9STRA2.390e-4347.44Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A7S2XS08_9STRA2.450e-4346.06Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4IYI4_9STRA2.660e-4244.73Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8C131_THAPS5.690e-4244.87Vps54 domain-containing protein n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10271contigH-fluviatilis_contig10271:2137..8076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue7e-81
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size1228
Cds size849
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.2601392-UTR-H-fluviatilis_contig10271:2136..23731622929068.2601392-UTR-H-fluviatilis_contig10271:2136..2373Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10271 2137..2373 -
1691135170.4962573-UTR-H-fluviatilis_contig10271:2136..23731691135170.4962573-UTR-H-fluviatilis_contig10271:2136..2373Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10271 2137..2373 -
1622929068.271278-UTR-H-fluviatilis_contig10271:3671..38131622929068.271278-UTR-H-fluviatilis_contig10271:3671..3813Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10271 3672..3813 -
1691135170.508533-UTR-H-fluviatilis_contig10271:3671..38131691135170.508533-UTR-H-fluviatilis_contig10271:3671..3813Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10271 3672..3813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.2825534-CDS-H-fluviatilis_contig10271:3813..39441622929068.2825534-CDS-H-fluviatilis_contig10271:3813..3944Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 3814..3944 -
1691135170.5193095-CDS-H-fluviatilis_contig10271:3813..39441691135170.5193095-CDS-H-fluviatilis_contig10271:3813..3944Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 3814..3944 -
1622929068.2920122-CDS-H-fluviatilis_contig10271:4571..47881622929068.2920122-CDS-H-fluviatilis_contig10271:4571..4788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 4572..4788 -
1691135170.5286093-CDS-H-fluviatilis_contig10271:4571..47881691135170.5286093-CDS-H-fluviatilis_contig10271:4571..4788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 4572..4788 -
1622929068.30395-CDS-H-fluviatilis_contig10271:5480..56641622929068.30395-CDS-H-fluviatilis_contig10271:5480..5664Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 5481..5664 -
1691135170.551047-CDS-H-fluviatilis_contig10271:5480..56641691135170.551047-CDS-H-fluviatilis_contig10271:5480..5664Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 5481..5664 -
1622929068.3162675-CDS-H-fluviatilis_contig10271:6321..65211622929068.3162675-CDS-H-fluviatilis_contig10271:6321..6521Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 6322..6521 -
1691135170.5640035-CDS-H-fluviatilis_contig10271:6321..65211691135170.5640035-CDS-H-fluviatilis_contig10271:6321..6521Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 6322..6521 -
1622929068.3283484-CDS-H-fluviatilis_contig10271:7959..80761622929068.3283484-CDS-H-fluviatilis_contig10271:7959..8076Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 7960..8076 -
1691135170.5736907-CDS-H-fluviatilis_contig10271:7959..80761691135170.5736907-CDS-H-fluviatilis_contig10271:7959..8076Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10271 7960..8076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10271.581.1prot_H-fluviatilis_contig10271.581.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10271 3814..8076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10271.581.1

>prot_H-fluviatilis_contig10271.581.1 ID=prot_H-fluviatilis_contig10271.581.1|Name=mRNA_H-fluviatilis_contig10271.581.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=283bp
TGYKLRSTLLSQAKAFVEARHEANKTALVKRLDAEKWVQADVTPERQALL
DRLSSGRVFPDSTRSSTTSAEGRGGTVSNGVGAYGNGSSRVSGDLPVQPS
FVADDRLGARKGGRGERRREAVVDGTSYKAVGSALLVSEMAVNFLNFAAR
FPAIGTDVLTRVGELLRVFNSRATQLVLGAGAIHSAAKLKSISAKHLALC
SQSLGLVRSLVPFLKAALASRLPQKHHLLLAQMDTVSQVGLPRSSRQDFR
QVCFDDRGAHRISRQLSQTNRLGCSWGTGGGD*
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mRNA from alignment at H-fluviatilis_contig10271:2137..8076-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10271.581.1 ID=mRNA_H-fluviatilis_contig10271.581.1|Name=mRNA_H-fluviatilis_contig10271.581.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=5940bp|location=Sequence derived from alignment at H-fluviatilis_contig10271:2137..8076- (Heribaudiella fluviatilis SAG_13_90)
ACGGGTTACAAGCTGCGGAGCACCCTCCTCTCCCAGGCTAAAGCCTTCGT
CGAAGCCAGGCATGAGGCGAACAAGACAGCGCTCGTGAAACGGCTGGACG
CTGAGAAATGGGTACAGGTCAGTAATATCATACTGTCGACAGTACATAAG
TGTCAGCATCCACACTACCGGAGCTCACAAACTCCGGTAGCAACATCCGC
GTTAGTCTGGTTCTTCGTAAGACCCTCCTGGTGCTGTGGGCGGTCGAGCA
CGTGCGTTCGATGTTAGTGCACATGCCCCCCAATAAAATCGTGATGTTCG
ATGAGCAACAGGTGCAACACATTCGTATACACTACAGTGAGCTGCCTCCT
CAGAGTAAGATAAGGGTGCGATGGTGTATTACTTGGTGTGTGATGATCGG
TGGACACGATCTCACCCCATGCATATCAATTGATGAGATGATGGACCACC
GGGGAATTGAATTTGTCGCTCCGGCAGCTGTAGCACAAGCAAGTACACTG
AGAGCAACGTAACATGAACACTCGACGTGTCCATGCTATGATCCACCACT
ACACGGTATTTGCATCATGGCAAATTCTTATCTTCCCTTGTTGGAGGTGC
TTCACCCTGGACACTTTGGTCTCGCACGGTGATTCATCTGCCGTCGCCGA
AATGCTAGATAATGGGATTTTTTCCCTAAGTTTCCGTACAGTTCTGTTGG
CCTTGTTGTTTTTAGTGTTGAAGAGACACTTTAGTCGTGTATTTCTGCTC
GCGCAACGGGACAATCGGTGGTCAGGTTTCTCGTGGTACTTTAGAAGTGG
GTGAAGCAAGCATGCTATGTAGTCGTTGAAGTAACTGTTGGCGCCGGTGC
GATGACTTCATACCGGGCAGCGCTTGTCATACATACGGTTGCGGGTTTCC
CGCTTCGGCAGAGGCGACAGTCGCTAGACGGATGGCGTCCGTTATTTTCC
ATTTCGTTTTTTTTTATTTTGTAGTTTGTGACAAAATGTATACAAGATTT
CGGGAGCATGGTTCCTGTATCTTGGACAGAAGTAGCGGGCGAGAACTTGC
GATACAGTATGATATGATATGATATGATGGATTTGCGGAGCTATCGCACC
CCGCTATGCTTCACAACCCACTTTCCTTAGCCTCGTGGTTTTCGTCTGCA
AACGGTTCACTCCCTTTCGAGATAATCAAAAGCCTCCCCGATTATAGCTT
TCGAACGTACCGTATACGAACATGCCATTGACCAGTAAGGCACGGTTCTC
CTCCCTGAATCGCCGCATTGCAGTGTTGACCATGTGTTTAACGAACATCT
TCATTGCGTTTCGTATGGTAACCTCCCATCCAAATCACAAGGATTGGAAG
AGTCGATTTTGAGTGGCGGGTTCAGGACGTCTGAATGTACTGGAAGCCAC
CTCCATGTTTTCGCTGAGCGGCACGATGGTCGGTTTTCTCTGATACTGTC
TGAGCTTATCCTACACCGTTGGTCTGTTGATCCCTTCCTCCGCCCGGTGC
CCCCTACCGCCCGCCGTTCCCCGTCAATATATTGTCGTTGTCGTCATTGT
CGCAGGCGGACGTTACGCCAGAGCGTCAAGCCCTGCTCGACCGCCTCTCG
AGCGGCCGAGTTTTCCCCGACTCCACACGCTCTTCTACCACTTCGGCCGA
GGGACGCGGCGGCACCGTGAGCAACGGCGTTGGCGCGTACGGTAACGGGA
GCTCGAGGGTGTCGGGCGATTTGCCTGTGCAGCCTTCCTTTGTGGCGGAT
GACAGGTACAACAGGTGTTCAACGGGGCCGCGAGAGGGGGGGCGGGGGGT
ACAACCGAAAAAGAGAGAAAAGAGTCAATTTTTGGGGGGCCACATGCCTG
GTGTTGAAGTTTCGTGGTCGTATCGCACACAAGGGTGAGAATATGCACGA
GGGTTGCTCGGTTCACTGAGGTCGATCGGCAAGTGGAGTCTGCTGTTGCC
ACTGATATCACCACATCGCATGATCGCCAATACGTCTATTGTTTAGCGAG
CAGCAGACTACTAGCCGAGGCCCCGCGAGACAATCTTTTCACATCCGTGG
CGTCACGGAATGGTGCAGAAACGTTACATGCTGATGACCCACGAGCGCAT
TAACGATGGAACGACGCCGGCAGTTTTCACCCGCTCTTGCCTTTCAATTT
AGTAAATTGATATCCGAAGGTAGCTATATCCCTTTGCCCCAGCCAGGCCC
GCAGAGCGAAACAGCGAGCACATTCAATCGAAGGACGCGATATCGTATAA
GAGGAGTGGAGAAAAGCAGAAACTTCTCGCAAAACAACCTTGGTGCCGCA
GCTCACTCAGCTTGTTTGGTTAATTTTACCCTCTTGCTTTTGGTCTCCAT
CGTCGTCTTTGTGGATGTTGTGTTTGTTTCGTTGTGTGTATGTGTGTGTT
TCCGTCCATCAGGTTGGGGGCGCGCAAGGGAGGGCGAGGAGAGCGTCGAC
GAGAGGCCGTGGTGGACGGGACGAGCTACAAGGCGGTGGGGAGCGCCCTC
TTGGTCAGCGAGATGGCGGTGAACTTCCTGAACTTCGCTGCGCGCTTTCC
GGCGATCGGCACTGACGTTCTCACCAGAGTCGGCGAGCTTTTGAGGGTGG
GTGGAAAACCCAACTTTAGTGGCAACTGTTGCGAATGATGTTTACTCACA
GGTTTATGCGGCTGGCATAGGTATATATATATTTTTGCTGTCAAATAATC
AGATTGACGGTAGTCGAAAACAGTGGCGTGAGTTTGTGGTTTTCTTGGAT
GGACGAGAGTTCGGAGAGGTTCTTCTTGCCTCCTTGAGTGCGGGGTGCAG
TATGCAAAAAGATTGAGTTGTCGAGGGAATGTCGTCCTGGTATTTCCCTT
CTTCAGCCGGATTGCCAGTACGGTGCGTCGGGTTTTGTTTGCCGGCGGGT
GTGCGGCACTCGCTAGGTGTTGTGCAACGGTGGAGCGGGTCCCTTCAGTA
GAAAAGTCCAGTTGATCAGAGAATGAAAGGAGACGCGGGAGCTTCGCTAG
GGTCTGTGAGCGAGTGTTTTTTGGCAATCCATACTCGACACAGCAGGGTC
ATCGATGGTTGGCACAGATGTAGGGATGGGTAATGTTGGTAGTGTTGCAG
AACTGGTCGTATTGTGCAACACATTGATTTTTTTCGAGATATTTCCCAGG
TGTCAATCTTGCATGCAGCAGCGCAGGTGACACGAAGAAAGACGTGCTCC
AGCTCTGCCCGCACCAGTGATCTTTCCCTTGCTGATTTCATGCTCCCCCC
TCTATTTCTTTATCACTGGCCTCGGCACCTACTTGTAGGTGTTCAACTCT
CGAGCAACACAGCTTGTGCTGGGGGCTGGGGCCATCCACTCGGCGGCGAA
ATTGAAGTCTATCTCCGCGAAGCACCTCGCTTTGTGCTCTCAGTCGTTGG
GCCTCGTGCGATCGCTCGTGCCTTTCCTGAAGGCTGCGCTTGCGTCGCGG
CTTCCGCAGAAACACCACCTTTTGCTGGCGCAAATGGACACGGTGTCACA
GGTGGGTGGATTATACCTAAGACAACTAGACGGCCTGAATAAACATGTCT
TTGTTGATGTGTCCCTGTGTGTGCTCAGTCGTATTCGGTCAGCGGGGATG
TCCTTTCGCTCATCCCAAGTTTGGCCTACCACGTCCAGGCGGATTGGATT
TCGAGCACGTGGTTGTGATGGTCATCCTTTAGTGAAGCATATGCTTTACT
CTTTGCCTTCATTTCAGCGTGTATCGAGCAGCGCCCGTTACTGTCACTCC
GTTACTGCACTTGTGGTCATCAAGGTAGAATTGGACCAACGTGCTGTTCA
TCAGAAAGATTGTCCAGTCGACGGATGCTGTTTGCGCTTACGCTGAGATT
TTTCTGTGTTTTCCAACACCCTTTTTTACATTGTGTTGCTTCCTTTCTCA
CTGGACAAGTTTTGCAAAAGCAACAGATGGATCGTGCTTGTCTGAAAGAA
GTGATGCGGTGTGCCAGCGTCTCGAGGGGATCTAATCCGCAAAAAGGCAC
CCAAGAGGGCTTCGAAATTGGCACCCACAAGCGCATCGAAATTGGCACAT
GGTCTATTCTCATCGGACTTCATCTCATGTACTTGTAACTATGAAAACTA
TCACCGACGTCTAAAAACATATCATGTTCCAGGACTTCCGCGATCATCGA
GACAAGATTTTCGGCAAGTTTGTTTCGATGATCGAGGAGCACATCGAATC
TCGCGCCAGCTCTCTCAGACTAACCGATTGGGATGCTCCTGGGGCACCGG
CGGGGGGGACTGAGCTGGGGGAGGTCGAAGGGGGAGCTTCGGGAGGCGGG
GGTGGGAACGGCGGCGAGCCCTGTCAATTCACCGCGGATCTCAGGAAGGG
TGTGACGGCTATGCATAACGTGTTACAACAGCAGCTACCTCCGGATCAGC
TACAGGTATGTATTGCACTGTGCGCTGCTGGGTGTTCCGTTTAGAGGGAG
AAGGTCGGTTCTGCTCAGTTCGCGGTGAGCAATTCTTGCGATCACGTTCT
ATCGAAGTTTTTGGGTGTCGTGACGCGATAGTAGGAGTCGCACCGTTCCA
AATGTACGCGGGGGGTCAAGGCGCGGCATTTTGTTTTCGAGACTTGAGCG
AATTAGTTGGAAACATCATACCAACGCTAGCTTTTCACGATTTTAGTTGG
TGTTCTGAATGATTTATACCATGGATCTTATGTGGCTGGGATATTTATTT
GCTCTACTCGATTGCGCATGCAGGCTCAACATCCGTCATCCCCTCTGCAA
GTGGCGGGTGTTGACGCACTCAAACTAACCCAACATGACGAGCACCCGGT
CACTCGCTTCACATCCTGTCGCTGCTCTCTTCCGCCTCCTACAAGTACCA
CTCCGCAATATGTTATGATAGTCGACAGCCCCCAAATCCTCCCTGCCCGC
CTATACTTTGAAGAAAATTTTTCAATTCCTACGAAGAGTAGGACAGGTAA
CAAGTAGCAGATGGAACTCCGACATGGTCTTTGTCCGAACTGCCTTGTCA
CGAGTAGGTTACCGTTCGGCGTCGTGTGTGTATTGCATGCAAAGAGAATC
TAAAATGTTGTTGTCTGAACTGTTTGTGAGACATACTGACTGCTGTACGG
TCGGTTTATATTACAAACTAAAGGATTGATGTGTTTTCAGCCTACTTAAG
CACAAGCATTTATGTGGGTTGCGATCTCATGAAACCATTCTATCATTGAT
TAGACATGCTGCGTGATCCTCGACACGGACGACACAAAGCTTCACGCCGA
AAAACTTGGTTTCCTGTGGAATGACGTGTGACGATGCACCAAGCAGTGGA
GAGGTGAGAGATGAACGACTGGGCGTGAGGCCACAAAAGACACCTGAGGC
AGAGTGGAATCAAAGCTGTAACAATGGTGCCGCGCGCGCACCAGCTACCT
ACACTACTTTTTGAGTGATGAGGGTTCTTGTCGACTCATGTTCAGGAGCC
TTCCTCCAGTCTTTTGTGGAGAGCTTGAATAAATTATTGCTCACTTGGTT
ATAGCGGGAAATGGTGATGAAGTCGTGTGCGGAAAATGGTGCAACTACCG
CTGTGTCTTGTTCTCCGTTATCTTAGCGGAGTTCGTGGGTATGATGTTGA
CTGTATCTATGTATGATCCATAGTCACATTAAATTTACAAGATGTCAACC
TCCTATCCGTTCCTCGCCCTCATCTCCTGTGCGCACCTGTCTCCACCTGC
TAGGCTATTTTCCGGCGCATTTTCACTGTCATCACGCGCAAGGTACCGGC
CTGCTTTGACCGCGAGGGCGTATCCCCGTCTACCGCGGCCGGACGACAGC
GTATCTTAGACGACATCGGCTTTGTTTGTGCCGCGCTGTCTACACTGCGG
GGGGTAGATGCTAGCACCCTTGGGCTCGAACAAGCGATTGCCGACCGCTA
CGGGAAGCCGATAGGCGGCGGAGGGGGGGGGGCAGGGGCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10271:2137..8076-

>mRNA_H-fluviatilis_contig10271.581.1 ID=mRNA_H-fluviatilis_contig10271.581.1|Name=mRNA_H-fluviatilis_contig10271.581.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1698bp|location=Sequence derived from alignment at H-fluviatilis_contig10271:2137..8076- (Heribaudiella fluviatilis SAG_13_90)
ACGGGTTACAAGCTGCGGAGCACCCTCCTCTCCCAGGCTAAAGCCTTCGT
CGAAGCCAGGCATGAGGCGAACAAGACAGCGCTCGTGAAACGGCTGGACG
CTGAGAAATGGGTACAGACGGGTTACAAGCTGCGGAGCACCCTCCTCTCC
CAGGCTAAAGCCTTCGTCGAAGCCAGGCATGAGGCGAACAAGACAGCGCT
CGTGAAACGGCTGGACGCTGAGAAATGGGTACAGGCGGACGTTACGCCAG
AGCGTCAAGCCCTGCTCGACCGCCTCTCGAGCGGCCGAGTTTTCCCCGAC
TCCACACGCTCTTCTACCACTTCGGCCGAGGGACGCGGCGGCACCGTGAG
CAACGGCGTTGGCGCGTACGGTAACGGGAGCTCGAGGGTGTCGGGCGATT
TGCCTGTGCAGCCTTCCTTTGTGGCGGATGACAGGCGGACGTTACGCCAG
AGCGTCAAGCCCTGCTCGACCGCCTCTCGAGCGGCCGAGTTTTCCCCGAC
TCCACACGCTCTTCTACCACTTCGGCCGAGGGACGCGGCGGCACCGTGAG
CAACGGCGTTGGCGCGTACGGTAACGGGAGCTCGAGGGTGTCGGGCGATT
TGCCTGTGCAGCCTTCCTTTGTGGCGGATGACAGGTTGGGGGCGCGCAAG
GGAGGGCGAGGAGAGCGTCGACGAGAGGCCGTGGTGGACGGGACGAGCTA
CAAGGCGGTGGGGAGCGCCCTCTTGGTCAGCGAGATGGCGGTGAACTTCC
TGAACTTCGCTGCGCGCTTTCCGGCGATCGGCACTGACGTTCTCACCAGA
GTCGGCGAGCTTTTGAGGGTTGGGGGCGCGCAAGGGAGGGCGAGGAGAGC
GTCGACGAGAGGCCGTGGTGGACGGGACGAGCTACAAGGCGGTGGGGAGC
GCCCTCTTGGTCAGCGAGATGGCGGTGAACTTCCTGAACTTCGCTGCGCG
CTTTCCGGCGATCGGCACTGACGTTCTCACCAGAGTCGGCGAGCTTTTGA
GGGTGTTCAACTCTCGAGCAACACAGCTTGTGCTGGGGGCTGGGGCCATC
CACTCGGCGGCGAAATTGAAGTCTATCTCCGCGAAGCACCTCGCTTTGTG
CTCTCAGTCGTTGGGCCTCGTGCGATCGCTCGTGCCTTTCCTGAAGGCTG
CGCTTGCGTCGCGGCTTCCGCAGAAACACCACCTTTTGCTGGCGCAAATG
GACACGGTGTCACAGGTGGGTGTTCAACTCTCGAGCAACACAGCTTGTGC
TGGGGGCTGGGGCCATCCACTCGGCGGCGAAATTGAAGTCTATCTCCGCG
AAGCACCTCGCTTTGTGCTCTCAGTCGTTGGGCCTCGTGCGATCGCTCGT
GCCTTTCCTGAAGGCTGCGCTTGCGTCGCGGCTTCCGCAGAAACACCACC
TTTTGCTGGCGCAAATGGACACGGTGTCACAGGTGGGACTTCCGCGATCA
TCGAGACAAGATTTTCGGCAAGTTTGTTTCGATGATCGAGGAGCACATCG
AATCTCGCGCCAGCTCTCTCAGACTAACCGATTGGGATGCTCCTGGGGCA
CCGGCGGGGGGGACTGAGACTTCCGCGATCATCGAGACAAGATTTTCGGC
AAGTTTGTTTCGATGATCGAGGAGCACATCGAATCTCGCGCCAGCTCTCT
CAGACTAACCGATTGGGATGCTCCTGGGGCACCGGCGGGGGGGACTGA
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