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Homology
BLAST of mRNA_H-fluviatilis_contig10260.567.1 vs. uniprot
Match: A0A6H5KDH3_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH3_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.910e-40 Identity = 111/215 (51.63%), Postives = 134/215 (62.33%), Query Frame = 2
Query: 1079 RHGGAAAAYPAEVGQKWKKRMEVLNLRAARQAFRERNPGIRVGIARDGRSVLDVLALPRPSKCPTIGQLSIDLHLLRRSEAVSVLEAVLAALHSRQSHASPG--SRPNSRLQSPITLDAASRSSASASARGVGEPGEGRGRASPEIREAG-------------FRKLEVVVGRGSHSSYGVARLRPVVARYLASKGFPAQAIAGERGEGVVVVEL 1678
R+GGAAAA P+ +GQ+WKK ME NLRAAR+AFRERNP IRVG DG SVL VL LP PS+C T GQLS+DLHLLRR+EA++VLE VL A+ R S +RP + QS + A+A G EP +P + + G F LEVVVGRG+HS GV RLRP V YLA KGF A+ + G+RG+GVVVV L
Sbjct: 821 RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTHDGVSVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIRRRAGEHSRVLVNRPRAPKQSQQLKE---HPDVVAAAAGQTEPSYSGASYTPPVAQQGEGLQHDRVIRVQKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEGVEGDRGKGVVVVGL 1032
BLAST of mRNA_H-fluviatilis_contig10260.567.1 vs. uniprot
Match: D7FMH4_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH4_ECTSI) HSP 1 Score: 169 bits (429), Expect = 5.080e-39 Identity = 107/213 (50.23%), Postives = 131/213 (61.50%), Query Frame = 2
Query: 1079 RHGGAAAAYPAEVGQKWKKRMEVLNLRAARQAFRERNPGIRVGIARDGRSVLDVLALPRPSKCPTIGQLSIDLHLLRRSEAVSVLEAVLAALHSRQSHASPGSRPNSRLQSPITLDAASRSSASASARGVGEPGEGRGRASPEIREAG-------------FRKLEVVVGRGSHSSYGVARLRPVVARYLASKGFPAQAIAGERGEGVVVVEL 1678
R+GGAAAA P+ +GQ+WKK ME NLRAAR+AFRERNP IRVG RDG +VL VL LP PS+C T GQLS+DLHLLRR+EA++VLE VL A+ R++ G N + A+ G EP +P + G F LEVVVGRG+HS GV RLRP V YLA KGF A+A+ G++G+GVVVV L
Sbjct: 726 RNGGAAAADPSRIGQRWKKSMETANLRAAREAFRERNPLIRVGHTRDGVAVLKVLRLPEPSQCSTPGQLSVDLHLLRRAEALNVLETVLHAIR-RRAGEHTGVLVNGPRAPKPSQQHKEHPGVVAAPGGHTEPSSSGASYTPPAAQQGEGLQHDRVMSVLKFASLEVVVGRGAHSVAGVPRLRPCVMGYLAGKGFRAEAVEGDKGKGVVVVGL 937
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 4465 |
| Cds size | 561 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929066.7759683-UTR-H-fluviatilis_contig10260:305..332 | 1622929066.7759683-UTR-H-fluviatilis_contig10260:305..332 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 306..332 + |
| 1691135169.8884034-UTR-H-fluviatilis_contig10260:305..332 | 1691135169.8884034-UTR-H-fluviatilis_contig10260:305..332 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 306..332 + |
| 1622929066.8132849-UTR-H-fluviatilis_contig10260:979..2090 | 1622929066.8132849-UTR-H-fluviatilis_contig10260:979..2090 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 980..2090 + |
| 1691135169.9012244-UTR-H-fluviatilis_contig10260:979..2090 | 1691135169.9012244-UTR-H-fluviatilis_contig10260:979..2090 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 980..2090 + |
| 1622929066.8752546-UTR-H-fluviatilis_contig10260:3231..5997 | 1622929066.8752546-UTR-H-fluviatilis_contig10260:3231..5997 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 3232..5997 + |
| 1691135169.933405-UTR-H-fluviatilis_contig10260:3231..5997 | 1691135169.933405-UTR-H-fluviatilis_contig10260:3231..5997 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10260 3232..5997 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929066.8356986-CDS-H-fluviatilis_contig10260:2090..2189 | 1622929066.8356986-CDS-H-fluviatilis_contig10260:2090..2189 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10260 2091..2189 + |
| 1691135169.9130785-CDS-H-fluviatilis_contig10260:2090..2189 | 1691135169.9130785-CDS-H-fluviatilis_contig10260:2090..2189 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10260 2091..2189 + |
| 1622929066.8619359-CDS-H-fluviatilis_contig10260:2769..3231 | 1622929066.8619359-CDS-H-fluviatilis_contig10260:2769..3231 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10260 2770..3231 + |
| 1691135169.9259446-CDS-H-fluviatilis_contig10260:2769..3231 | 1691135169.9259446-CDS-H-fluviatilis_contig10260:2769..3231 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10260 2770..3231 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10260.567.1 >prot_H-fluviatilis_contig10260.567.1 ID=prot_H-fluviatilis_contig10260.567.1|Name=mRNA_H-fluviatilis_contig10260.567.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=187bp
MEVLNLRAARQAFRERNPGIRVGIARDGRSVLDVLALPRPSKCPTIGQLS IDLHLLRRSEAVSVLEAVLAALHSRQSHASPGSRPNSRLQSPITLDAASR SSASASARGVGEPGEGRGRASPEIREAGFRKLEVVVGRGSHSSYGVARLR PVVARYLASKGFPAQAIAGERGEGVVVVELGGNSDG* back to topmRNA from alignment at H-fluviatilis_contig10260:306..5997+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10260.567.1 ID=mRNA_H-fluviatilis_contig10260.567.1|Name=mRNA_H-fluviatilis_contig10260.567.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=5692bp|location=Sequence derived from alignment at H-fluviatilis_contig10260:306..5997+ (Heribaudiella fluviatilis SAG_13_90) GATCTATCGGAGTGGACACATGCGCAGGTGATTGTTTCTCTGGTAGTGTG
GATGCAGCCCTACTCCTTTGCCCCTTCCGTATTGCTAGTTTGAGTCAGGT
ACTCCAAGAGTGTATTGTTTAGTTTGACCTATTTCTGAATGCTAGCCCTC
TGCACTCGCTGTTAACCGCTGAAATGGTTCGCGAGTGGTTCGCGTGTAGC
TCTTGAAGGCTTCGGATACCGCTGTATTTTCCCTTGCGTCACTCAGGTTC
GGGGTCCAAAGGGTCTGGAGGTGCGTTTGTGTGGCTTTGTTGGATGAGAT
GCCTCCATCCAAGTATCATTTGCACTTTTCATGACTGCATATTGCAGAAG
CTGTACCCGCGCGAGGGAAGGGGCGATTGCCAAGTAGCGTCGAAGAAGCT
GTGCACAGGAAGAAGAGCCAGGCTTGGAGGTGTACGGGGGACCTGAGTGG
AGAGCAGGGTACGTTGGGTGGTCCGGAACCGTTCCCATCGAGGTACACCA
TGACTCACGCGGAATGAAGCTGTATAAAGTCTGTTTGCGCTTTATTTCGG
AGGGCCACCGTCTTCTTTTGTCGGGGCTGGAGACCCTCGAAGTCAAACAT
TGCAGTGCCTTTTCGTCGCGCCTCTCATGCCGGGTCGACGTTCGCATTCC
CCTTCCTCCCCTTCCGACACGAAGATTGACGCATTGACAGAGTTGTCCAT
GGCATTTGACGGAGTTTTCGAGCGCGATAGAATTGTCGCGGCCTTGGTCG
CTTCGGACCACGACTCTTCCGCCGCCGCCCAACTTCTGCTAGAAAGCCAA
GGAGACGAGGAACGGAATGATAACCAGCAACAAGGACGACCTCAGCCCTT
GAAACAGCTTCGTCAGATTTTGGCCGGGTCGGGTAGATCCGGTCATGGCG
GCAAAAATAAACAGAAAAAAACGGCACATCATCGTCGAAGGAAGGGAACG
CACCAAACGCACCACCGACAACACCAGCTCGGTTCGACGTGCGTGGACAT
GAGCTGGTTGGATAAGGCGGCGGGGAGCGGAGACGGAGCGGGGGGAGGTG
TTCAGGAAGAAGTCGGGAGGCTTGAGGAGGAGGAAGGAGATGACGTCGCG
AGTTCGGAGGAATACCGCGCGCGAGCTGACGTAGCAGCGCAAGAGATGAA
AAGATGGTTTCAAAAAGCCGCCCATGCGTTTATCCAGGGGGGAGCACGTT
AACTTGCGAGCGTTCGCATCGATTTCGGCGATTCTTCTCGAGTTTTCTTT
TTCCTCTTTTTCTGTGGGCTTCGGCTCCTTGCGAAGGTTGTTATTTATTT
GCGGCCGCCGCGGCATCAACACAAGAATTCATGGAGGTTCCACGCGCGCG
TGTGGCGTTGAATGCGTTGTTCTTCGGTCGGGTAGAGTGAAAATGTACGA
GTGAGGTGCATTTCCATGTCATGAGCCGTCACGTTAAAGTTTGTTGATCC
TTGACGTTCGGTTGAGTTTCTTGTCCACAAAAAGTGTTTTCGCCGGACGC
ATCAGCGGAGTCTGTCCCTATCTGCTGCGCGATGAACGTCACGCGGATTT
TGCGTGGCCAACTGTAAATTTTTCTTTAGGCCTCTTTGTTTTTCTCCGGA
AAAATTGCGCCAGATTATTTCAAATGACGGGCAACCCTATGTCCGGCGCA
ACCGTTCGATGTGATGCCAAATAAAAAACGCGTCTTACCCGATTGCACAC
GCGTGACGATGTCTTCCGTTGATGTAGGCATGGGGGTGCGGCTGCAGCTT
ATCCTGCCGAGGTGGGCCAGAAATGGAAAAAGCGGATGGAGGTGCTGAAT
CTTCGGGCTGCGAGGCAGGCGTTTCGCGAGAGGAATCCGGGTATCAGAGT
GGGAATCGCTCGCGATGGCCGCTCTGTGCTCGATGTGAGATTACTGTGTT
CTTGAGGGAGGCTCTAGCCTGGCTGACCTCTCGAAGTTTCCACGTTGCTT
GTTATTTACTTGTCGGAACGTTTGTCGAGGTGAGCTTATTCGTTGCAATT
ACGTAGATATCGTTTCGAAATGTAAAGGGGGCGGTCAAGGACAGTCGAGG
GTGGTACCCGACTTACACACGGTCATGACCAACCCACTCGGGGGCGGCGA
CAGCGAGCATGCCCGCACTTACGGCCACTGTCACACCCCGGTGAAGGCTT
GTCCATTTCTCATAGTAATCCTATCGCTCGTCACAAATCCGCAACTAGAC
GATGATATTGGGCGAGCGAGCGACAGTACCGGCAGGCAATCGTGATCGTT
TTCTGGTGCTTACCCCAACTCAACAGCCGAAGTTTCTTCTACCGGCGGTC
CAACTTGAGCGATTTTCACCGATCTGATATGACCCGAGAGTGCCCCGTCC
AGGAGCCTTCCCGCATCATGACTACGACGATGATGACATCCGTATCGCCC
GCTCTTATTTCGGCCTCTCTTCCCCTTCCTCGTCGCCGATCCGTTGCTCG
AATTGGACCACAAGGTGCTGGCACTCCCCCGCCCTTCCAAGTGCCCTACC
ATCGGCCAGCTGTCGATAGACCTGCACCTGCTCCGCCGATCGGAAGCGGT
GAGCGTGCTCGAAGCAGTTCTCGCCGCTCTCCATTCACGCCAGAGCCACG
CCTCGCCGGGCAGCCGTCCGAACAGTCGACTGCAGTCTCCCATAACACTG
GACGCGGCCAGTAGAAGCAGCGCCAGCGCCAGCGCAAGAGGCGTAGGAGA
ACCGGGGGAGGGGAGAGGGCGGGCGTCGCCGGAGATACGTGAGGCGGGGT
TTAGGAAACTGGAGGTTGTGGTGGGTAGGGGGTCTCATAGTAGCTATGGA
GTGGCTCGGCTTCGGCCGGTGGTGGCACGATATCTGGCGAGTAAGGGCTT
CCCGGCGCAGGCGATTGCTGGCGAGAGAGGGGAAGGGGTCGTAGTGGTGG
AATTGGGTGGAAATAGCGATGGGTAAGGTGAGGCAATCATGTTACGGGGG
TGGTAGTCATGTGGACGCTTGCATGTGGTGTTTTGAGTTATTTGCTGTGC
AGCTTATACACGCGAACGACTGCTTGTGTCGTCCTACAGGCGTGCTTTAA
CTTGCCGCAGACGGGTATAATTGATTAGAGTAAACAGGCGTCTCACTCAG
AGCCGATTATTAATGCAGGTCGATAGTTTTAGATCTGCGTGAGTCGTTGT
GTGGAGAGTGCGACATTTTGTCTAACCTTTGTTGAACGCGTTTGGTGTCC
GTTTTCCATCGGAATATCCCGAGCTTGCGCGTGCAACGGTCTCCGCTTGG
GCGAGGTACCTTGCCTATTCTGGCGGATGTTATTTTGTTGCGCGAGTTTT
GCGATTTTGGATGTTCCCATTGTTTTTCGAGAAACATTTATTCTGCGAAC
GTTGCCTTACCAGTGTGAAGTCAGTGTACTCCCTAAATTGGTGATCTATC
TTCTCCCGATAGCGTTGATCCTGTGTCACATTGCCTTGTCGTGTCGAGCT
TTGCGAAATATGTTTCAGATGTTGGCCGTGTGGTTCCTGTTATTGTTGCT
TGTTCATACGATGGAGGGTGTCTTCCGAAATGCTGGCCCTCCTGCAATGA
GAGAGTGAGATATTGTGCATCGCCCATGTTTGTGAACTAACGTGTTGACT
TTGAGATTTAATATTGGTAACGTTTAGTGAGTCCTCGAGATTTCAATTTG
CTGTAGTGTGCACACACCGCATCGGTGAGCTCCTATGGTAACTGTAAGTG
GGATTCGACAAAGTCGATGCGCGCCGTAAATTGTATGATTGCATTCTTTA
CCTCTTATCGAAGGTATTGGCTTGTCTGTAGCGGTCGTTATACGAGTCGA
GTCGAGGAATGCGTGCGCAGTTGCGTGTGGCATAGAGCAAGGCAAAGACA
GTGTGCGTCGACGTATTCTCTTCCCGGATTCAGAAGCAGCGCCTACCCCG
GGTTTTTCAAATCAAAGCTCTATTGCTCCGCTACAAATCTTGAGGTGATT
GATTAAAACACTGACGGCGTACGACGTGACTGCGGACTTCAAATCTCTGT
GCAGCGTCTGAGGTCGACTCATGCCAGCAGATTGCATACTCTACAACTGG
GTTGCTCGAGTGCACTGATCACTGAGTGTATCGGCTTTTGTTTCAGGTTG
GATGATGCGAGGGCAAAAGAAGGGTGGAAGCCGTTCGTGGGAGACTCCTG
GTGTGCTGGTTTGGTGCTTCAGATACGAAAAGTCAACGAGAAATAACTCT
AAACTACGCTGTAAATATTCCCGCGACGGTCGGCTTTGTGCTGTTGACTC
TGCCGGCGGCAGCATTGACGGTTCTTACTATATGTAGAGTACGATTTTTA
CCTCAGTCAGTCCTGATTAATAGAGGCAATTGGTGGCGTCTCTGTTGTGT
GCCTTGCAGTCGGAGGGTACACACACTGATGTCTGTAGTACCCGATTTTG
ATGGGAAGTGTACCGAGTATTTACAGTCAGTCGAGGAAGATGCACGCCCA
GCAAACAACGAGCTAGTTGTTGGTGAGGATGAATGCACCCAATTGCAACA
GCAGCCATTTATGATTTTGTCATACGCAGCTGTGTTGGGTTCATTTGGTT
GTTGAGCGGATTGTAGTGTGCAGCGGGGACAGTGTCATATCATCGCCAAC
TTACGGTTCGTAAGGAGCCGAGTGAGGAGATCGTCGCGATGCAATTTGTT
CGTCGTGGTACGATAGGAGTAACGTGTTTGCTGGACGCCGTTTTGATTGT
ATTGGAGTTAGGGAGGGAGGATGAGATATGCGGTGTGACCTAGCTAATGA
GGTGAATGCAAACGCTACTTTTCCATTAGCTCTATCGTTGTGTTCTTGTT
GCTCTTGTACGATCGAGCGATGGCGATTGGTTGGAGTCGTTTGTTGCTCG
GATACTTTGATCGTGTTCGCTGTTGCGGCGTAATGCATTCATGCGTGCGA
GTGACCCACTTCATGGATCGACCGCTAGTAAGTGTGTAAGCAATGAAACT
TGGCATGTTTTTCATCACGCTGTATCGGCACGATTAGCCAAATGATACGA
AGGACGCGTTTTCAACATCCTGGTCGTGCTAAAAAAGTTCTTTTATTGGC
ACACCAACTGCGGCCCAAAATTAAACTCGCATGTATGTATGTGCAGATCG
CAACAGCCAGGTGGCTTAGCATGGATTAGGAGGGGGGGCTGCGTAGGTAC
AGAATGAAGTCATTGCAGTGAAACTGAACGAGGTGGAGGGGACGGTGCAG
CAGCGGGTTAGAGCGGAAGTCGAAACCTAAGCGTGCTTGGCTGCCGACGC
GGGTGACGGGGTGCCGACAGGAAGTATCGCTATCCCGTAGACAAACAACC
GATTCTGTCTGTGGCAAGGTCCTAATGATTCAGGCACGTCTGGGTAATTG
GAGCGTTGTATTGTAGCGGTAGTGGATCATGGGCGAGCGATCAACCCTTA
AAAACAAGCTCCTCCCTTTTCTTGTCTTCCATTCTTGCAGTTTTGACCCC
TATGCGTCTGTTTAATCATGCTGAGGTCCCGTTTTTGTGTTGAATGCGTG
GCTGAATGAAAAGAAGCCAGTCGTTGCAATAGGGAGGGGTTGGGGGTTGG
CGCACCGATTGCGTGCGAGCACGAAAGAAGAAAGCGCGTGTATGTGCATT
CGCTGCCAGCGCGGGTCAGCGGGGGGCGCGGTGGTGACGAGGTGTGCGGG
AAAACATTGTTCTATGAAGAATAAATAAAAAAACGTTGTAGC back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10260:306..5997+ >mRNA_H-fluviatilis_contig10260.567.1 ID=mRNA_H-fluviatilis_contig10260.567.1|Name=mRNA_H-fluviatilis_contig10260.567.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1122bp|location=Sequence derived from alignment at H-fluviatilis_contig10260:306..5997+ (Heribaudiella fluviatilis SAG_13_90) ATGGAGGTGCTGAATCTTCGGGCTGCGAGGCAGGCGTTTCGCGAGAGGAA TCCGGGTATCAGAGTGGGAATCGCTCGCGATGGCCGCTCTGTGCTCGATA TGGAGGTGCTGAATCTTCGGGCTGCGAGGCAGGCGTTTCGCGAGAGGAAT CCGGGTATCAGAGTGGGAATCGCTCGCGATGGCCGCTCTGTGCTCGATGT GCTGGCACTCCCCCGCCCTTCCAAGTGCCCTACCATCGGCCAGCTGTCGA TAGACCTGCACCTGCTCCGCCGATCGGAAGCGGTGAGCGTGCTCGAAGCA GTTCTCGCCGCTCTCCATTCACGCCAGAGCCACGCCTCGCCGGGCAGCCG TCCGAACAGTCGACTGCAGTCTCCCATAACACTGGACGCGGCCAGTAGAA GCAGCGCCAGCGCCAGCGCAAGAGGCGTAGGAGAACCGGGGGAGGGGAGA GGGCGGGCGTCGCCGGAGATACGTGAGGCGGGGTTTAGGAAACTGGAGGT TGTGGTGGGTAGGGGGTCTCATAGTAGCTATGGAGTGGCTCGGCTTCGGC CGGTGGTGGCACGATATCTGGCGAGTAAGGGCTTCCCGGCGCAGGCGATT GCTGGCGAGAGAGGGGAAGGGGTCGTAGTGGTGGAATTGGGTGGAAATAG CGATGGGTAAGTGCTGGCACTCCCCCGCCCTTCCAAGTGCCCTACCATCG GCCAGCTGTCGATAGACCTGCACCTGCTCCGCCGATCGGAAGCGGTGAGC GTGCTCGAAGCAGTTCTCGCCGCTCTCCATTCACGCCAGAGCCACGCCTC GCCGGGCAGCCGTCCGAACAGTCGACTGCAGTCTCCCATAACACTGGACG CGGCCAGTAGAAGCAGCGCCAGCGCCAGCGCAAGAGGCGTAGGAGAACCG GGGGAGGGGAGAGGGCGGGCGTCGCCGGAGATACGTGAGGCGGGGTTTAG GAAACTGGAGGTTGTGGTGGGTAGGGGGTCTCATAGTAGCTATGGAGTGG CTCGGCTTCGGCCGGTGGTGGCACGATATCTGGCGAGTAAGGGCTTCCCG GCGCAGGCGATTGCTGGCGAGAGAGGGGAAGGGGTCGTAGTGGTGGAATT GGGTGGAAATAGCGATGGGTAA back to top
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