mRNA_H-fluviatilis_contig102525.556.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102525.556.1
Unique NamemRNA_H-fluviatilis_contig102525.556.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: K8Z5Y3_NANGC (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z5Y3_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 3.210e-7
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGTQ 72
            DP DPY+LTDETRELGLV+CRGTQ
Sbjct:   30 DPLDPYRLTDETRELGLVICRGTQ 53
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.960e-7
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGTQ 72
            DP DPYKLT+ETRELGLVVCRGTQ
Sbjct:   57 DPTDPYKLTEETRELGLVVCRGTQ 80
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.970e-7
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGTQ 72
            DP DPY+LTDETRELGLV+CRGTQ
Sbjct:   58 DPLDPYRLTDETRELGLVICRGTQ 81
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: A0A653DGR0_CALMS (Sm domain-containing protein n=4 Tax=Cucujiformia TaxID=41088 RepID=A0A653DGR0_CALMS)

HSP 1 Score: 49.3 bits (116), Expect = 4.120e-6
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPYKLTD+TRELGLVVCRGT
Sbjct:   71 DPDDPYKLTDDTRELGLVVCRGT 93
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.230e-6
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGTQ 72
            DP+DPY++TDETR LGLVVCRGTQ
Sbjct:   54 DPSDPYRVTDETRTLGLVVCRGTQ 77
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: UPI000874FB6A (U6 snRNA-associated Sm-like protein LSm7 isoform X1 n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874FB6A)

HSP 1 Score: 49.3 bits (116), Expect = 4.280e-6
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPYKLTD+TRELGLVVCRGT
Sbjct:   73 DPDDPYKLTDDTRELGLVVCRGT 95
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: L1JQ55_GUITC (Sm domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ55_GUITC)

HSP 1 Score: 47.0 bits (110), Expect = 2.350e-5
Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPYKLT+ETR+LGL+VCRGT
Sbjct:   54 DPDDPYKLTNETRQLGLIVCRGT 76
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: T1IXR9_STRMM (Sm domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IXR9_STRMM)

HSP 1 Score: 47.0 bits (110), Expect = 2.810e-5
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPYKLTD+TR LGLVVCRGT
Sbjct:   62 DPDDPYKLTDDTRTLGLVVCRGT 84
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: A0A6L5CNK4_9INSE (Sm domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CNK4_9INSE)

HSP 1 Score: 46.6 bits (109), Expect = 2.820e-5
Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPYKLT++TR+LGLVVCRGT
Sbjct:   45 DPDDPYKLTEDTRQLGLVVCRGT 67
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BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Match: A0A6A4WL24_AMPAM (U6 snRNA-associated Sm-like protein LSm7 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4WL24_AMPAM)

HSP 1 Score: 47.0 bits (110), Expect = 2.980e-5
Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:    1 DPADPYKLTDETRELGLVVCRGT 69
            DP DPY+LTD+TR+LGLVVCRGT
Sbjct:   65 DPDDPYRLTDDTRQLGLVVCRGT 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102525.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
K8Z5Y3_NANGC3.210e-787.50U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=N... [more]
D8LPU6_ECTSI3.960e-791.67Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A4D9CX90_9STRA5.970e-787.50Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A653DGR0_CALMS4.120e-691.30Sm domain-containing protein n=4 Tax=Cucujiformia ... [more]
A0A836C8L6_9STRA4.230e-683.33Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
UPI000874FB6A4.280e-691.30U6 snRNA-associated Sm-like protein LSm7 isoform X... [more]
L1JQ55_GUITC2.350e-582.61Sm domain-containing protein n=1 Tax=Guillardia th... [more]
T1IXR9_STRMM2.810e-586.96Sm domain-containing protein n=1 Tax=Strigamia mar... [more]
A0A6L5CNK4_9INSE2.820e-582.61Sm domain-containing protein n=1 Tax=Ephemera dani... [more]
A0A6A4WL24_AMPAM2.980e-582.61U6 snRNA-associated Sm-like protein LSm7 n=3 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102525contigH-fluviatilis_contig102525:91..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size154
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.4316704-CDS-H-fluviatilis_contig102525:90..1711622929065.4316704-CDS-H-fluviatilis_contig102525:90..171Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102525 91..171 -
1691135169.334113-CDS-H-fluviatilis_contig102525:90..1711691135169.334113-CDS-H-fluviatilis_contig102525:90..171Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102525 91..171 -
1622929065.4488156-CDS-H-fluviatilis_contig102525:646..7181622929065.4488156-CDS-H-fluviatilis_contig102525:646..718Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102525 647..718 -
1691135169.3467286-CDS-H-fluviatilis_contig102525:646..7181691135169.3467286-CDS-H-fluviatilis_contig102525:646..718Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102525 647..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102525.556.1prot_H-fluviatilis_contig102525.556.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102525 91..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102525.556.1

>prot_H-fluviatilis_contig102525.556.1 ID=prot_H-fluviatilis_contig102525.556.1|Name=mRNA_H-fluviatilis_contig102525.556.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=51bp
DPADPYKLTDETRELGLVVCRGTQEQRAEHIRRMAKSVCIATCFQSSALV
G
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mRNA from alignment at H-fluviatilis_contig102525:91..718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102525.556.1 ID=mRNA_H-fluviatilis_contig102525.556.1|Name=mRNA_H-fluviatilis_contig102525.556.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=628bp|location=Sequence derived from alignment at H-fluviatilis_contig102525:91..718- (Heribaudiella fluviatilis SAG_13_90)
GATCCAGCGGATCCTTACAAGCTGACGGACGAAACAAGAGAGCTGGGACT
GGTGGTGTGCCGGGGTACTCAGGTCAGCTTGATCTCGCCAACAGACGGAA
TGGAGGAGATCGAGAATCCCTTCGTTGGCGCTGAGGGATAGCGAGCTGTC
ACAACAAATTGGGCGGTGTAGCACCCGCTGTTGGGAAGGAGTATCTCTCC
TCGTTTTGTGTGTTCGGGGGACCGTAGGACTTGTTGATGTTGTGACGTAT
CTTGAGGCATTTTCTTTTGCCGAGCTAAAGATCATGTATCTTTTGGGGGA
TAAGGTGAAATTGTACGGGGGGTGTGTGTAAGAGGGTACAAGAGGCTTTC
GAGGGGATGGTGTGTGAGAATGTGCGGAGATCAACACATTTTTTTTCGTG
TTCCCGGGTTCAAGCACCGCTCATACTTTGTTGTGTAACATACAGGCGCG
CCTGTTTCCGTGCAAAAACCGCGGGGGGTAAGGGAGCCATGTGTTCTGTA
TTCGATCGCTCAACTTAGTAGTCAAGTTTCTTTGTCTTGGCATGCAGGAA
CAACGTGCCGAACACATCAGGAGGATGGCGAAGTCCGTCTGCATCGCTAC
CTGCTTCCAATCTTCGGCTCTAGTCGGT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102525:91..718-

>mRNA_H-fluviatilis_contig102525.556.1 ID=mRNA_H-fluviatilis_contig102525.556.1|Name=mRNA_H-fluviatilis_contig102525.556.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=306bp|location=Sequence derived from alignment at H-fluviatilis_contig102525:91..718- (Heribaudiella fluviatilis SAG_13_90)
GATCCAGCGGATCCTTACAAGCTGACGGACGAAACAAGAGAGCTGGGACT
GGTGGTGTGCCGGGGTACTCAGGATCCAGCGGATCCTTACAAGCTGACGG
ACGAAACAAGAGAGCTGGGACTGGTGGTGTGCCGGGGTACTCAGGAACAA
CGTGCCGAACACATCAGGAGGATGGCGAAGTCCGTCTGCATCGCTACCTG
CTTCCAATCTTCGGCTCTAGTCGGTGAACAACGTGCCGAACACATCAGGA
GGATGGCGAAGTCCGTCTGCATCGCTACCTGCTTCCAATCTTCGGCTCTA
GTCGGT
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