mRNA_H-fluviatilis_contig10250.554.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10250.554.1
Unique NamemRNA_H-fluviatilis_contig10250.554.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A6H5L9K3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9K3_9PHAE)

HSP 1 Score: 774 bits (1998), Expect = 1.240e-264
Identity = 500/974 (51.33%), Postives = 599/974 (61.50%), Query Frame = 1
Query:  118 MGNRGKGAXXXXXXXXXXXXXXAVGKA--CAKWGDEQTAADQEDSA-PVKKKRRVTQETQDRQRRVKLMELARAKEQQRRERLSKPNYEPIIHPEAAAPKPRKXXXXRPLKHPGASRDTPYYSSSDEENPHNTGF---------------FGAGLATYNKLLTALESGKGNSKGGLLSADGGDSGGFDHDLAAAVRARRMQREGRDG-----------------------YASKDESESGSSGDLKEHEVEDADGSAEEESEGELDTEAKIGKVNQQEQEMIGVENLAGGDGLSISNGQLHGKSREQNGGQEGGDDRAEADLYEAVESGDLGVDEDKEHSGAAINGGTV---SRDEFNRHFVSTPVFPPEEAAQMLASSARPIFRPLANTSGLRKWEAAGLSVSASKSAD----------LPPVLAPDANLSRELGVLPSLADGWDTNNEGISSPSRKVQSLIIPPIMGYLDMLYCGWRDEDAGAIRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKL--------------------ENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLLGPKTVVINKERFDDEYGPDKDGDDL----GLDDDPSGK---KTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDD--VDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQRHMLVCRIPRDIARY 2790
            MGNRGKG       XXXXXXXX        +KWGDE    + E    PVKKKRR+TQE QDRQRR+K+MEL R K++++R+RLS+PN       E  A KP+KXXXX   +                                       F AGLA+Y KLL+ALE+G                 G D DLAAAV ARRMQREGRD                               +SG +G       ED DG+               G          G ENL                    NGG   G    + D+       D+G        GA   GG     SRDEF RHFVST VFPPE+AA + ++  RP F+PL++ +    W+AAGLS +AS+ A           +PP L   A++S ELGVLPSL  GW+  N+G  +P+ K+QSL++P + GY DMLYCGWRDE+A  IRR YALHALNHALTS+RRV+RHT +LRKAAEE R+AE  AR  +++A++ +                           E+    +   S +    NG  V+  AAA   S  K   D + D+WQRDQGFTRPKVL+LLPFR LAHEVVE+MI LLGPKTV +NK RFD+EYGPD   D+     G + D + +   + ERAKAV+ERKP DWKALLGEGRNVDDMFT+G+S+SPGGGKGKPG G+GVGVRLYCDFYNSDI+IASPVALHRASVP  G E +    VD+DFLSSVEVCILDRADVFLMQNW+YVP+IAEVLN+RP+G+RA+R DFSRVR  FLH+QGRLFRQTL+FSAFQD NLNA  SRH RNHDG+V++ RPSG+GHIC VALQAKQVFQRVP ES  TQDD+RFEYFVGTVLPQ+LR KQSHTA+FIPSYFDYVRVRN+L+KN+ASV NVHEYSRGSEV++      R  RD+  Y
Sbjct:    1 MGNRGKGLSKGKGGXXXXXXXXXXXXXXXASKWGDEGAGRENEQKGQPVKKKRRLTQEAQDRQRRMKIMELNRTKDREKRQRLSQPNTADPA--EVLATKPKKXXXXXXXRGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKSGFDAGLASYKKLLSALEAG---------------GSGEDKDLAAAVVARRMQREGRDDSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGQAG-------EDVDGA---------------GXXXXXXXXDNGQENL--------------------NGGTPNGRSTHDVDM-----ESDVGDXXXXXXXGAGGVGGRAAGRSRDEFCRHFVSTSVFPPEKAADLFSNRGRPSFKPLSSNAERSNWDAAGLSAAASRKAATQEEKDGDGVVPPPLPKGASVSAELGVLPSLERGWEACNDG--APASKLQSLLLPSLSGYRDMLYCGWRDEEAEEIRRCYALHALNHALTSRRRVVRHTARLRKAAEEARVAEVLARAAQKEASSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXESVTPAVGSKSESSSIGNGT-VSEGAAAAAVSSKKATVDSESDDWQRDQGFTRPKVLILLPFRGLAHEVVEMMIDLLGPKTVTVNKGRFDEEYGPDDHNDEEAGIEGAEADGTKRENARAERAKAVLERKPGDWKALLGEGRNVDDMFTLGISLSPGGGKGKPGEGRGVGVRLYCDFYNSDIIIASPVALHRASVPGDGGEGDGSGGVDSDFLSSVEVCILDRADVFLMQNWSYVPDIAEVLNSRPTGERASRADFSRVRPLFLHEQGRLFRQTLVFSAFQDPNLNAFASRHLRNHDGVVKISRPSGEGHICEVALQAKQVFQRVPCESLVTQDDSRFEYFVGTVLPQVLRAKQSHTAVFIPSYFDYVRVRNHLMKNKASVVNVHEYSRGSEVARSRARFFRGDRDLLLY 907          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: B8C934_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C934_THAPS)

HSP 1 Score: 277 bits (709), Expect = 6.120e-80
Identity = 155/370 (41.89%), Postives = 232/370 (62.70%), Query Frame = 1
Query: 1648 EVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLLGPKTVVINKERFDDEYGPDKDGDDLGLD-DDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPS-GGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRP--SGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            E+T  +  V  +    + D  +D+W RDQG+TR KVL+L P R    + V+ M+ LLG   ++ N+ERFD E+GP    D+ G D D+   KK  R  AV+++K  +W  L G+  + DD F IGMS++P    G  G    V V+L+ +FY+SD+++ASP+ L  A+  +  G+   D  D DFLSS++VCI+ R+DV LMQNW +V  + E LN +P+  + A +DFSRVR+ FL  +G  +RQ ++ + F D  + +   R+ +N +G +++ R   + D  ICNV ++ KQVFQRV  ++ S    +R  YF   VLP+++RLKQ HT ++IPSYFD+V VRN LLK +A+  +V EY+R SEVS+
Sbjct:   23 ELTSSSNDVNSTSDNDLVDEGVDKW-RDQGYTRSKVLILFPTRGTCWKFVQQMMQLLGDAAMIDNEERFDAEFGPPPPPDNEGSDKDEAETKKEARRLAVLKQKGQEWNELFGDDVSNDDDFKIGMSLTPNVTAGAAG----VSVKLFSEFYHSDVILASPIGLKLATTTNEDGDXXXDRADVDFLSSIDVCIVARSDVLLMQNWDHVNGVLECLNQQPT--QIADIDFSRVRNYFLEGEGENWRQLIVVAKFADPYILSTFRRYGKNIEGQMKMRRKVAADDASICNVMVRVKQVFQRVVCQTVSDAGTSRLRYFADHVLPKLMRLKQKHTLIYIPSYFDFVAVRNLLLKREANFVSVTEYARISEVSR 385          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: K0S4P7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4P7_THAOC)

HSP 1 Score: 279 bits (714), Expect = 2.150e-77
Identity = 179/495 (36.16%), Postives = 260/495 (52.53%), Query Frame = 1
Query: 1309 ISSPSRKVQSLIIPPIMGYLDMLYCGWRDEDAGAIRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLLGPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKP--------GAG-KGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFND-----DVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSG--DGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            +S P   +Q  + P I  Y D++       +   +    +LH +NH LTS+ RV RH +++++                             L  G G                            G++I D D ++W RDQG+TRPKVLVLLP R   HE V+ +   LG   +V N+ERFD EYGP    DD    DD +G    R   V+ +K  +W  L G+  N DD F IG++++P   K           G+G  GV V+L+ DF++SDI++ASP+ L  A   SGG+E        D +ADFLSS+E+C +  +DV LMQNW +V  + E LN +P     A +DFSRVR+ FL  +G  +RQ ++ S F D ++ +   RH  + +G +++ R +   D  +C+V ++ KQVFQRVP  S S     R  YF  ++LP++ RLKQ HT ++IPSYFD+V VRN +LK +    +V EY+R SEVS+
Sbjct:  286 LSVPFSPLQLALYPAISSYADVMISSVTRRNRNDVANLLSLHIINHVLTSRSRVHRHNLRIKE-----------------------------LTKGSGET--------------------------GQVIEDDDENKW-RDQGYTRPKVLVLLPTRGTCHEFVKRITASLGDSAIVDNEERFDAEYGPLDPIDD----DDSTG--NARRNVVLRQKGPEWNELFGDDANSDDDFKIGLALTPHVAKSADKKKKKVDSGSGASGVKVKLFADFFHSDIILASPIGLKMAI--SGGDEXXXXXXXADTNADFLSSIEICFVSSSDVMLMQNWDHVNGVLESLNQQPKN--IADIDFSRVRNYFLEGKGANWRQLIVTSQFSDPHILSTFRRHALSIEGQLKMRRKTSVEDASVCDVMVRVKQVFQRVPCISVSEAGSNRLRYFSESILPKLTRLKQKHTLIYIPSYFDFVAVRNMMLKREMDFVSVTEYARVSEVSR 714          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A0S7HYA3_9TELE (U3 small nucleolar RNA-associated protein 25 homolog n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HYA3_9TELE)

HSP 1 Score: 248 bits (633), Expect = 2.330e-68
Identity = 175/508 (34.45%), Postives = 249/508 (49.02%), Query Frame = 1
Query: 1276 LADGWDTNNEGISSPSRKVQSLIIPPIMGYLDMLYCGWRD---------EDAGAIRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ-RHMLV 2760
            L   W   N+ ++    K Q+  I P+   L  L   ++D         +    +R +Y LH LNH L +  RVL H  +LR+                                                            +S+ K   +P+  E  RDQG TRPKVL+L+PFR  A +VV  +I LL   G K +V NK++F +E+G                 +TE  K    R+P D+ A+     NVDD F IG+SI  G             +RLY  FY+SDI+IASP+ L R  + + GE      D DFLSS+E+ +LD+ DVFLMQNW +V  + + +N +P       VDFSRVR   L++  R +RQTL+FS+ QD  +N ++++HC N+ G + +      G IC V +Q   VFQ   S+S   QD  RF++F+  VLPQ      SHT ++IPSYFDYVR+RN++ K + +  +V EYS  SEVS+ RH  +
Sbjct:   63 LESSWRNLNQSLNP---KGQAEEISPLQTELLSLMGSYKDLYHPEACHLKQGPYVRSAYCLHVLNHILKANSRVLAHNTQLRE-----------------------------------------------------------RKSQAKAGVEPE--EEPRDQGLTRPKVLILVPFRGAALQVVHTLISLLETKGKKIIVSNKKKFKEEFG-----------------ETEEEKPANLRRPDDYHAVFSG--NVDDHFRIGVSIVRGN------------MRLYAPFYSSDIIIASPLGL-RTVLGAEGESKR---DYDFLSSIELLVLDQTDVFLMQNWEHVLHVMKHMNLQPLDSHG--VDFSRVRMWNLNNWARHYRQTLVFSSIQDPQINNILTKHCANYRGQITIKNMPKTGSICQVLVQLPHVFQMFSSDSFMNQD-TRFQFFIDKVLPQYKDSVMSHTLIYIPSYFDYVRLRNHMKKEEINFTSVCEYSSKSEVSRARHFFL 468          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: H2TTY3_TAKRU (U3 small nucleolar RNA-associated protein 25 homolog n=6 Tax=Takifugu TaxID=31032 RepID=H2TTY3_TAKRU)

HSP 1 Score: 250 bits (639), Expect = 1.390e-67
Identity = 174/495 (35.15%), Postives = 248/495 (50.10%), Query Frame = 1
Query: 1288 WDTNNE-----GISSPSRKVQSLIIPPIMGYLDMLYCGWRDEDAGA-IRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            W T N+     G +  +  +Q  ++  +  Y D+ Y        G  +R +Y LH LNH L +  +VL H  +LR                                                   + T P A              L+E  RDQG TRPKVL+L+PFR  A ++V+ +I L+   G K VV NK+RF DE+G D+D     L                 ++P D++A+     NVDD F IG+SI                +RLY  FY+SDI+IASP+ L R  V + GE+     D DFLSS+E+ +L++ADVFLMQNW +V  + + LN +P    A  VDFSRVR   L++  R +RQTL+FS+ QD  +N+++++HC N+ G +        G IC V +Q   +FQ   ++S   QD ARF++F+  VLPQ      SHT ++IPSYFDYVR+RNY+ K +   A++ EYS  SEVS+
Sbjct:  250 WKTLNQMSSSKGANEETSPLQLELLAAMGTYKDLYYPEVCPLKQGPQVRSAYCLHILNHVLKANSQVLAHNAQLRD--------------------------------------------------QKTKPGAG-------------LEEEPRDQGLTRPKVLILVPFRGGALQIVQTLISLMESKGKKIVVNNKKRFKDEFGEDEDDKPPNL-----------------QRPDDYRAIFSG--NVDDHFRIGISIVRSS------------IRLYSPFYSSDIIIASPLGL-RTVVGAEGEKKR---DFDFLSSIELLVLEQADVFLMQNWEHVLHVMKHLNLQPLD--AHGVDFSRVRMWNLNNWARHYRQTLVFSSIQDPQINSILTKHCANYRGQISTKNMPKTGSICQVLVQLPHIFQMFSADSFMDQD-ARFQFFLDKVLPQYRDSAMSHTLIYIPSYFDYVRLRNYMKKEELDFASICEYSSRSEVSR 643          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A3Q3M035_9TELE (U3 small nucleolar RNA-associated protein 25 homolog n=2 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A3Q3M035_9TELE)

HSP 1 Score: 250 bits (638), Expect = 2.770e-67
Identity = 172/489 (35.17%), Postives = 248/489 (50.72%), Query Frame = 1
Query: 1294 TNNEGISSPSRKVQSLIIPPIMGYLDMLYCGWRD--EDAGAIRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            +N++G+S     +QS ++  +  Y D LYC           +R +Y LH LNH L +  +VL H  +LR+                                                            +++GK  ++P  DE  RDQG TRPKVL+L+PFR  A  VV+ +I LL   G K VV NK+RF +E+G + D     L                 ++P D+ A+     NVDD F IG+S+                +RLY  FY+SDI+IASP+ L R  + + GE      D DFLSS+E+ ++D+ADVFLMQNW +V  + + +N +P       VDFSRVR   L++  R +RQTL+FS+ QD  +N+++++HC N+ G +        G IC V +Q   VFQ + S+S     D RF++FV  VLPQ      SHT ++IPSYFDY+R+RNY+ K + + A+V EYS  SEVS+
Sbjct:  278 SNSKGVSEEVSPLQSELLALMYSYKD-LYCPEMCPLSRGPQVRSAYCLHVLNHVLKANSQVLAHNSQLRE-----------------------------------------------------------QKTQGKPGSEPQ-DE-PRDQGLTRPKVLILIPFRGGALRVVQTLISLLETKGKKIVVSNKKRFKEEFGEEADNKPPNL-----------------QRPDDYHAIFSG--NVDDHFRIGVSVLRSS------------IRLYAPFYSSDIIIASPLGL-RTVLGAEGESKR---DFDFLSSIELLVVDQADVFLMQNWEHVLHVMKHMNLQPLDSHG--VDFSRVRMWSLNNWARHYRQTLVFSSIQDPQINSILTKHCANYRGQISTKNMPKTGSICQVLVQLPHVFQMLTSDS-FMDHDTRFKFFVDKVLPQYRDSIMSHTLIYIPSYFDYIRLRNYMKKEEINFASVCEYSSKSEVSR 666          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: B5Y4I3_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4I3_PHATC)

HSP 1 Score: 243 bits (619), Expect = 3.620e-67
Identity = 148/353 (41.93%), Postives = 209/353 (59.21%), Query Frame = 1
Query: 1714 DEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLLG------PKTVVIN-KERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWR--PSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            + W RDQGFTRP VL+LLP R+  H+ V+ ++ LL       P +   + ++RFD EYGP    DD  +D++    +  R KA+ + K SDW  L GE  N DD F +G+S+ P     K        ++LY DFY SDI++ASP+ L  +  P    E +D+ DADFLSS+E+CI+ R+DV LMQNW +V ++  +LN +P   +    DFSRVR   L  Q   +RQ ++ S F D  + +   R   N  G VR+ R  P+ + ++ +V L  +QVFQRV   + + Q   R  YFV +VLPQI R KQ HT +FIPSYFD++ +RN LLK +    +V EY+R SEVS+
Sbjct:   46 ESW-RDQGFTRPTVLILLPTRSTCHDFVKTLLSLLQQDQPQQPNSRDDDARDRFDQEYGP-LQVDDADMDENA---RVYRQKAI-QSKGSDWHELFGETANDDDDFKLGLSLHPKRRNKKSVTESTCDIKLYSDFYKSDIIVASPLGLKISVTPESISETSDN-DADFLSSIEMCIVHRSDVLLMQNWDHVMDLLPLLNQQPK--KTNDTDFSRVRPYLLAGQAAQWRQLIMTSQFLDPLILSTFKRFSENRQGQVRIRRKTPAEEANVTSVLLPVRQVFQRVSCSTIANQGADRVRYFVDSVLPQIQRHKQHHTMIFIPSYFDFISLRNILLKKEVEFVSVTEYARTSEVSR 389          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A665W6G8_ECHNA (U3 small nucleolar RNA-associated protein 25 homolog n=2 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665W6G8_ECHNA)

HSP 1 Score: 248 bits (634), Expect = 6.850e-67
Identity = 170/488 (34.84%), Postives = 244/488 (50.00%), Query Frame = 1
Query: 1294 TNNEGISSPSRKVQSLIIPPIMGYLDMLYCGWRDEDAGA-IRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            +N +G+S     +Q  ++  +  Y D+ Y      + G  +R +Y +H LNH L +  +VL H  +LR+                                                            +++ K  A+P  DE  RDQG TRPKVL+L+PFR  A  VV+  I LL   G K  V NK+RF DE+G D+D     L                 ++P D+ A+     NVDD F IG+SI  G             +RLY  FY+SDI+IASP+ L R  + + GE      D DFLSS+E+ ++D+ADVFLMQNW +   + + +N +P       VDFSRVR   L++  R +RQTL+FS+ Q+  +N+++++HC N+ G +        G IC V +Q   VFQ   S+S     DARF++FV  V PQ      SHT +FIPSYFDY+R+RNY+ K + + A++ EYS  SEVS+
Sbjct:  257 SNPKGVSQEITPLQLELLALMGSYKDLYYPEMCPLNEGPQVRSAYCIHVLNHVLKANSQVLAHNAELRE-----------------------------------------------------------QKTQAKAGAEPQ-DE-PRDQGLTRPKVLILVPFRGGALRVVQTFISLLESKGKKMTVSNKKRFKDEFGEDEDEQPANL-----------------KRPDDYHAVFSG--NVDDHFRIGVSIVKGS------------MRLYAPFYSSDIIIASPLGL-RTVLGAEGESKR---DFDFLSSIELLVVDQADVFLMQNWEHFLHVMKHMNLQPLDSHG--VDFSRVRMWNLNNWARHYRQTLVFSSIQEPQINSILTKHCANYRGQIATKNMPKTGSICQVLVQLPHVFQMFSSDS-FMDHDARFQFFVDKVFPQYRDSVMSHTLIFIPSYFDYIRLRNYMKKEEINFASICEYSSKSEVSR 645          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A6P7HHB2_9TELE (U3 small nucleolar RNA-associated protein 25 homolog n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7HHB2_9TELE)

HSP 1 Score: 248 bits (634), Expect = 7.980e-67
Identity = 169/488 (34.63%), Postives = 247/488 (50.61%), Query Frame = 1
Query: 1294 TNNEGISSPSRKVQSLIIPPIMGYLDMLYCGWRDEDAGA-IRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            +N +G++     +Q  ++  +  Y D+ Y        G  +R +Y LH LNH L +  +VL H  +LR+                                                            ++  K  A+P  DE  RDQG TRPKVL+L+PFR  A +VV  +I LL   G K +V N+++F +E+G + D     L                 ++P D+ A+     NVDD F IG+SI  G             +RLY  FY+SDI+IASP+ L R  + + GE      D DFLSS+E+ ++D+ADVFLMQNW +V  + + +N +P       VDFSRVR   L++  R +RQTL+FS+ QD  +N ++++HC N+ G++        G IC V +Q   VFQ + S+S     DARFE+FVG VLPQ      SHT ++IPSYFD++R+RNY+ K + + A++ EYS  SEVS+
Sbjct:  266 SNPKGVAEDISPLQLELLALMGSYKDLYYPETCPLKQGPQVRSAYCLHVLNHVLKANSQVLAHNAQLRE-----------------------------------------------------------QKTHAKAGAEPQ-DE-PRDQGLTRPKVLILVPFRGSALQVVHALISLLEAKGKKIMVGNRKKFKEEFGEETDDKPPNL-----------------QRPDDYHAIFSG--NVDDHFKIGVSIVKGS------------IRLYAPFYSSDIIIASPLGL-RTVLGAEGESKR---DFDFLSSIELLVVDQADVFLMQNWEHVLHLMKHMNLQPLDSHG--VDFSRVRMWNLNNWARHYRQTLVFSSIQDPQINNILTKHCANYRGLIATKNMPKTGSICQVLVQLPHVFQMLTSDS-FIDHDARFEFFVGKVLPQYRDSVMSHTLIYIPSYFDFIRLRNYMKKEEMNFASICEYSSKSEVSR 654          
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Match: A0A8C5G6B3_9TELE (U3 small nucleolar RNA-associated protein 25 homolog n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5G6B3_9TELE)

HSP 1 Score: 248 bits (632), Expect = 1.060e-66
Identity = 165/448 (36.83%), Postives = 227/448 (50.67%), Query Frame = 1
Query: 1411 IRRSYALHALNHALTSQRRVLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQGSSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLLPFRALAHEVVEIMIGLL---GPKTVVINKERFDDEYGPDKDGDDLGLDDDPSGKKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGKGVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVCILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGRLFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAKQVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVRVRNYLLKNQASVANVHEYSRGSEVSQ 2745
            +RR+Y LH LNH L +  RVL H   LR+                                                            +++ K  A+P  +   RDQG TRPKVL+L+PFR  A +V+  +I LL   G K +V NK++F +E+G + D     L                 ++P D+ A+     NVDD F IGMSI                +RLY  FY+SDI+IASP+ L R  + + GE      D DFLSS+E+ ++D+ADVFLMQNW +V  + + +N +P       VDFSRVR   L++  R +RQTL+FS+ QD  +N ++S+HC N+ G V V      G IC V +Q   VFQ   S +   QD ARF +FV  VLPQ      SHT ++IPSYFDYVR+RNY+ K + + A++ EYS  SEVS+
Sbjct:  287 VRRAYCLHVLNHVLKANSRVLSHNALLRE-----------------------------------------------------------QKAQAKAGAEPQAEP--RDQGLTRPKVLILVPFRGAALQVIHTLISLLESKGKKIIVSNKKKFKEEFGEEADNKPSNL-----------------QRPDDYHAIFSG--NVDDHFRIGMSIIKSS------------LRLYAPFYSSDIIIASPLGL-RTVLGADGESKR---DFDFLSSIELLVMDQADVFLMQNWEHVLHVMKHMNLQPLDSHG--VDFSRVRMWNLNNWARHYRQTLVFSSIQDPQINNILSKHCVNYRGQVTVKNMPKTGSICQVLVQLPHVFQMFSSVTLMDQD-ARFHFFVDKVLPQYRDSAMSHTLIYIPSYFDYVRLRNYMKKEEMNFASICEYSSKSEVSR 635          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10250.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9K3_9PHAE1.240e-26451.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B8C934_THAPS6.120e-8041.89Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0S4P7_THAOC2.150e-7736.16Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A0S7HYA3_9TELE2.330e-6834.45U3 small nucleolar RNA-associated protein 25 homol... [more]
H2TTY3_TAKRU1.390e-6735.15U3 small nucleolar RNA-associated protein 25 homol... [more]
A0A3Q3M035_9TELE2.770e-6735.17U3 small nucleolar RNA-associated protein 25 homol... [more]
B5Y4I3_PHATC3.620e-6741.93Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A665W6G8_ECHNA6.850e-6734.84U3 small nucleolar RNA-associated protein 25 homol... [more]
A0A6P7HHB2_9TELE7.980e-6734.63U3 small nucleolar RNA-associated protein 25 homol... [more]
A0A8C5G6B3_9TELE1.060e-6636.83U3 small nucleolar RNA-associated protein 25 homol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10250contigH-fluviatilis_contig10250:340..6654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score781.2
Seed ortholog evalue5.2e-223
Seed eggNOG ortholog2880.D8LQM2
Preferred nameDIEXF
KEGG koko:K14774
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009611,GO:0009653,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022613,GO:0030163,GO:0030490,GO:0030515,GO:0030684,GO:0031016,GO:0031017,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035239,GO:0035265,GO:0035272,GO:0035295,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048483,GO:0048485,GO:0048513,GO:0048546,GO:0048565,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055123,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090594,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1990904
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsKOG2340@1,KOG2340@2759
Ec32 ortholog descriptionDUF1253 domain protein
Ec32 orthologEc-10_006190.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size2790
Cds size2673
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10250.554.1prot_H-fluviatilis_contig10250.554.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10250 340..6537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.249002-CDS-H-fluviatilis_contig10250:339..6091622929065.249002-CDS-H-fluviatilis_contig10250:339..609Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 340..609 -
1691135169.2644198-CDS-H-fluviatilis_contig10250:339..6091691135169.2644198-CDS-H-fluviatilis_contig10250:339..609Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 340..609 -
1622929065.2638042-CDS-H-fluviatilis_contig10250:1235..13521622929065.2638042-CDS-H-fluviatilis_contig10250:1235..1352Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 1236..1352 -
1691135169.2746966-CDS-H-fluviatilis_contig10250:1235..13521691135169.2746966-CDS-H-fluviatilis_contig10250:1235..1352Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 1236..1352 -
1622929065.2829268-CDS-H-fluviatilis_contig10250:2131..42551622929065.2829268-CDS-H-fluviatilis_contig10250:2131..4255Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 2132..4255 -
1691135169.2834527-CDS-H-fluviatilis_contig10250:2131..42551691135169.2834527-CDS-H-fluviatilis_contig10250:2131..4255Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 2132..4255 -
1622929065.298255-CDS-H-fluviatilis_contig10250:6375..65371622929065.298255-CDS-H-fluviatilis_contig10250:6375..6537Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 6376..6537 -
1691135169.2912548-CDS-H-fluviatilis_contig10250:6375..65371691135169.2912548-CDS-H-fluviatilis_contig10250:6375..6537Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10250 6376..6537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.3141448-UTR-H-fluviatilis_contig10250:6537..66541622929065.3141448-UTR-H-fluviatilis_contig10250:6537..6654Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10250 6538..6654 -
1691135169.2984223-UTR-H-fluviatilis_contig10250:6537..66541691135169.2984223-UTR-H-fluviatilis_contig10250:6537..6654Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10250 6538..6654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10250.554.1

>prot_H-fluviatilis_contig10250.554.1 ID=prot_H-fluviatilis_contig10250.554.1|Name=mRNA_H-fluviatilis_contig10250.554.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=891bp
MGNRGKGAKGKSSKRGRKGKKGAVGKACAKWGDEQTAADQEDSAPVKKKR
RVTQETQDRQRRVKLMELARAKEQQRRERLSKPNYEPIIHPEAAAPKPRK
RKRKRPLKHPGASRDTPYYSSSDEENPHNTGFFGAGLATYNKLLTALESG
KGNSKGGLLSADGGDSGGFDHDLAAAVRARRMQREGRDGYASKDESESGS
SGDLKEHEVEDADGSAEEESEGELDTEAKIGKVNQQEQEMIGVENLAGGD
GLSISNGQLHGKSREQNGGQEGGDDRAEADLYEAVESGDLGVDEDKEHSG
AAINGGTVSRDEFNRHFVSTPVFPPEEAAQMLASSARPIFRPLANTSGLR
KWEAAGLSVSASKSADLPPVLAPDANLSRELGVLPSLADGWDTNNEGISS
PSRKVQSLIIPPIMGYLDMLYCGWRDEDAGAIRRSYALHALNHALTSQRR
VLRHTVKLRKAAEELRMAEEAAREEKRDAAANSGQLSRKLENGIGVISQG
SSNHQDANGCEVTPPAAAVTQSEGKMIADPDLDEWQRDQGFTRPKVLVLL
PFRALAHEVVEIMIGLLGPKTVVINKERFDDEYGPDKDGDDLGLDDDPSG
KKTERAKAVVERKPSDWKALLGEGRNVDDMFTIGMSISPGGGKGKPGAGK
GVGVRLYCDFYNSDIVIASPVALHRASVPSGGEEFNDDVDADFLSSVEVC
ILDRADVFLMQNWAYVPEIAEVLNARPSGDRAARVDFSRVRHSFLHDQGR
LFRQTLIFSAFQDANLNALVSRHCRNHDGIVRVWRPSGDGHICNVALQAK
QVFQRVPSESPSTQDDARFEYFVGTVLPQILRLKQSHTAMFIPSYFDYVR
VRNYLLKNQASVANVHEYSRGSEVSQRHMLVCRIPRDIARY
back to top

mRNA from alignment at H-fluviatilis_contig10250:340..6654-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10250.554.1 ID=mRNA_H-fluviatilis_contig10250.554.1|Name=mRNA_H-fluviatilis_contig10250.554.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=6315bp|location=Sequence derived from alignment at H-fluviatilis_contig10250:340..6654- (Heribaudiella fluviatilis SAG_13_90)
TGCCACCATAAACTTCCCGTATACTTTTGAAGCTACAAAATACCACACAG CATTGCCAGTCGATCATTGTGCTCGTCTTGACGCTTGCGAAGAGCGAGTG AACAGGCAACATTAAGTATGGGTAATCGTGGGAAAGGAGCAAAAGGGAAA TCCTCCAAGCGAGGCAGGAAGGGCAAAAAAGGTGCAGTCGGCAAGGCCTG CGCCAAGTGGGGCGATGAACAGACAGCGGCAGACCAGGAGGACAGCGCGC CGGTCAAGAAGAAACGCCGCGTAACGCAGGTGCGTAGTGCAGATTAGAGG CTTGTAATGCTCTGGTTGACTTGTGCGTGGGATCCTGAGACGTGGGGTGC GTGGGACGGGAGAGAGAGCACCACAACGGTGTCCGCACACAGCACCACCA ATATCAACATACGATGATGCACAATGTGTTTTCTGCTGTACAGTAGGCAA GTGAAATATAGCCAGCGCAGTTTTCAGTACCAAATAATAGTAGTAGCGGT GCCTTCGTAGATGGCAGCACCAGCTTTGATGCATCGGTATCGTGTTGCAT TCCACATCATTACTGGATTTCGCGAACTTGCTCCTGAACCGGTCATATAT GTTATCCTGTTCGTGGTCGTGGCTGACTGTGTAACTTACAAACAGTACGG ACTCACACAGCACAGTACAAAGGTATGAGTAGGTGGTTAAGAGAAAGAAA CGGAGGATAAAAAAATGAGCGGGAAAAAAACAGAAACAGGTGCGACTCCT TCATGACCAATCCGTAATTTACTTGTTTCTAGTATTAAACTACCTGCACC TTTTTGTAGCTCGAGTGGAGGAATTGGCCCTGCCCACTCCACACATATGT TTGAAGAAAGCAAACCAACACCGTTCAGGCACCGTCTGAAAAATCGCGAT TTGTCTATAGATCAAAATGGCAAGTTAATATGGCAGCTTTGTCTATTCGA TCGTAGAAAAGCAGATCGTAACTTTGGTCACCTTTTGGACCCACCGATTG GCAGCTGACGTGGTGTTGATGTTCGTGCAGATTTTGTATAGTTCATAATG AAGTTCACAGCCGATGTACGTGTCAGCAGCAACTGTATTTTACGGTACTG CCTTGATTATACCATGAGTTTTGTGTTTTTCTCCAATGTATGCGGTAATA CGGCGGTATCCTCTAGTGCATACGCTTGTACCATTTCATTTTTTTTCATG AGTTTTAGTGTAGTAACGCACGTGGCAAAAATATGCCCCCATTTTTTTTT GGCATTGTTATATGCCACCCTTTTTTCGTTACATCCAAAATCTGGAAAGG TGTGAGCCAGAGCAGGTTACAGCGCATCCAACGCACCAAACTGCACACGA ATCTGCCCCGTCGTTGCTGAGAAAACCCTACTCAGGGTTTGGCACTTTTG GCCTACAAAATACCTTAAAATGAGCTATATAAGAATTACTGTAGCATACG GTCCTGTGCGCATTGAAAAACAAACGAACTTCGACACCGAAGAAAAAGGT CGAGATGCACAATGATTACCCGGACGCCCATTGTTGGCACGACTCCAATT CTCGAGCTATGACCTCAAAGAATGCACATCAAGCACAGCTGGACTAGAGC TTAACCCGGAGCTATCCCGCTTTGTTTCGACTTCTCCGTGCTTGGCGCTG TTGGATTTGTCGCGAAACAAGATCTCAGGAGTGCCTGTGAAAAAGCAGCG CAAAACTGAACGACAGACCCCGAAAAAGCCTCGCCTGTACAACCATGAGG TGTTCGTGCATCGTTGGCACAACGCCACCTCTGCCTCCGAACAAAGTTGA TGGTGAAGGTTAAGCGTAGAGCTTGACGGCGAGCTGACAGTTTCTCGTTG CCTGCTCTCGTCCACCATCACGTCGCCTTTGGTGATACTTATGAAGCAAA ATTCCAAACAACTCGCCTCTTGTATCATAAATTCGCTTCATTTTTTCGTT TGCCGGGACAAACAAAACCCTAGAATGTCGTCAAATGGTATTTCGTACTG GGTGACTGTATTTTGTCAGCTGATTTGATTGGTCCATTTGTGGGATTCGA GAAGAAAGTAGCAATTAATATGACAGAGATCTGGTGGTTGCTGGCTATCT TTGGGTCTCATCTTCAGACTTGACAGTGCACTCGTTGTAACATCGTTGGA TACCCATAACAACCCACACGGAGGTACTGTTTGTATGACAAAACGACCGA GGCACTCACGAATACTCTGCACCGAAATGTCGTGTGAATAACGGTGCAGA TTTGAGTATCATTTACGATATAGTGCAGTTGAGGCAGCATTTTGTTATTT GCCACACAGCCGACTGTCCTCAGACGCGCGTGCCGCCTGCGCTGCCGACC TGATAGTCACACGATCAACCTCTGCCGTTTCAACTTGAACAACTCTCAGG AAACCCAAGATCGACAGCGAAGGGTAAAGCTCATGGAGCTCGCCCGGGCC AAAGAACAGCAGAGACGAGAGCGTCTCAGCAAGCCGAACTACGAGCCGAT CATCCATCCCGAAGCAGCTGCACCAAAACCCAGAAAAAGGAAGCGGAAAC GCCCCCTCAAACACCCTGGCGCGAGCAGAGATACCCCTTACTACAGCAGC AGCGACGAGGAGAATCCTCACAACACGGGGTTCTTTGGCGCAGGGCTCGC AACCTACAACAAGCTGCTCACGGCGTTGGAGAGCGGGAAGGGTAACTCGA AGGGCGGCTTGCTGTCCGCTGATGGTGGTGATAGTGGTGGCTTCGACCAT GATCTGGCCGCGGCCGTGCGGGCACGACGCATGCAGAGAGAAGGGCGTGA CGGTTATGCTAGTAAGGACGAGAGCGAGAGCGGAAGCAGTGGTGACCTCA AGGAACACGAGGTGGAGGACGCCGACGGCTCTGCTGAGGAAGAGTCGGAG GGCGAGCTGGACACGGAAGCGAAAATCGGAAAAGTAAATCAACAGGAGCA AGAGATGATCGGGGTGGAGAACCTGGCTGGTGGAGACGGTTTATCAATTT CCAACGGACAGCTTCACGGTAAAAGCAGAGAGCAGAATGGTGGACAGGAA GGAGGGGATGACAGAGCCGAGGCAGATCTTTACGAGGCCGTTGAGAGCGG TGACCTGGGTGTTGACGAGGACAAGGAGCATTCTGGCGCAGCGATCAACG GAGGAACCGTAAGCAGAGACGAGTTCAACCGTCATTTCGTGTCTACTCCT GTCTTCCCGCCAGAAGAGGCGGCACAGATGCTGGCCTCCTCAGCACGTCC GATCTTTAGGCCTCTGGCGAACACGAGCGGGCTGCGCAAGTGGGAAGCCG CCGGACTTTCCGTTTCTGCATCGAAGAGCGCCGACCTTCCGCCCGTCCTC GCCCCCGACGCGAATCTGTCTCGGGAGCTTGGGGTTTTGCCGTCCCTCGC GGACGGGTGGGACACAAACAACGAGGGGATCTCGTCGCCGTCGAGAAAGG TGCAGTCTCTCATAATACCGCCGATCATGGGCTACCTGGATATGCTGTAC TGTGGGTGGCGGGACGAGGACGCTGGGGCGATTCGGAGGTCGTATGCCCT GCACGCGCTCAACCACGCGCTTACGTCCCAGCGCCGGGTGTTGCGACATA CGGTTAAGCTGCGTAAGGCGGCGGAGGAACTGCGAATGGCCGAAGAGGCG GCTCGTGAAGAGAAGAGAGACGCGGCCGCGAACAGCGGACAATTGTCGAG AAAACTTGAGAACGGAATTGGCGTGATATCGCAGGGGTCGTCGAACCACC AGGACGCAAACGGCTGCGAGGTTACGCCTCCAGCGGCGGCGGTAACGCAA TCAGAGGGTAAGATGATCGCAGACCCGGACTTGGACGAGTGGCAGCGGGA TCAAGGTTTTACCCGTCCTAAGGTGCTCGTCTTGCTGCCCTTTCGGGCGC TCGCGCACGAGGTCGTGGAGATCATGATCGGCCTCTTGGGTCCGAAGACC GTCGTCATCAACAAAGAACGGTTCGACGACGAGTACGGACCGGACAAGGA CGGCGACGACCTCGGGCTTGACGATGACCCGAGCGGGAAGAAGACCGAGC GAGCGAAAGCCGTTGTCGAGCGCAAGCCGTCGGACTGGAAAGCGTTGCTG GGGGAAGGACGTAACGTCGACGATATGTTCACGATCGGGATGTCGATATC TCCGGGCGGTGGTAAGGGTAAGCCGGGAGCGGGGAAAGGCGTCGGCGTGC GGCTGTACTGCGACTTTTACAACAGCGACATTGTCATCGCGTCTCCTGTG GCTTTGCACCGCGCGTCCGTTCCGAGCGGCGGGGAAGAGTTCAACGACGA CGTAGACGCGGATTTTTTATCGAGCGTCGAGGTTTGCATCTTGGACAGGG CCGACGTTTTCCTCATGCAAAACTGGGCCTACGTTCCCGAGATCGCGGAG GTTCTTAACGCGAGGCCTTCTGGCGACCGGGCCGCGCGCGTGGATTTTTC GCGAGTGCGTCACTCGTTTCTTCACGACCAGGGTCGGCTCTTCCGACAGA CGTTGATCTTCAGCGCTTTCCAGGTATTCGTTGGGCATGTTGCGCTGTCG TTGCTGTCTCATTTGTTGCCGTCATCTACATATTTTTTCTCCTTCCTCTC TTCCGACCCTCGTGCTGTCTAGCGCACACCGGAGTTGTTTGGGAAGCCGG ATGCGCGTGTCACAGCCGAATCGTTCTTTGTTTCGTTACCGCACGCCGGC GTGATGACACTTGTGCGTGTTGCCCGGGAGTGGAGGAAAGTGTGATGTGG CTATGACAGGCATCCGATTGTACATTGACGAGATTTTGTTCCGTCGTACG CCTGTTAGCGTCAGGCACTTTCAGACCCTTTTGTTTGCCGGAATATGACC TTGCATGCCGAGTGTGCGCGCTGATTCTTATTTTTGCTTAAGCTCGGAAG CCATTGTGACACGGCATCGTCCGCTACCGTATTGTGTGAATGAATTGCGG TTTTACGAAGGGAAATAAAACGGGAAATAAGACCCGTACAAGGCCTCGTG CGAAAACCGGGCGTGGATAGGAAATGCTTTCGGCCGCAGCAACGGGATTC AGTTACGGTTTTGAAGAATGTAGGCTCGAACCCACTAGAACCCGGGTCAT CCTCCACAAGTGCTGAAGCTAGACCATAGCGTTCAACGTCATTTTCGTGA CGATGGTGGGTCCAGGAGACTATCGCGTTAATATGAGAGAGCTCAATCGT ATCCAGGGGCGATTGAGAATATATAGAAATGTAAAAATATTTGTTGTTCT GGGATCAAATGGTTTGACTCTTTTTCTTCTTTTTTTCATATTTCCACGTT AGGATGCCAACTTGAACGCGCTGGTTTCGAGACATTGCCGGAACCATGAC GGAATTGTGAGAGTTTGGCGACCCAGCGGGGACGGGCACATCTGCAATGT GGCGCTCCAGGCTAAGCAGGTACAATTCGTTGCACTGAAGTCAACAAGAG CAATAAAGGAGGAGGTCTGTAGAAGAGTACTGTAACTCGGGTGTTTGCAG GATCATGCACTTTTTGAGCTGGCAAGTGCTTGCCTACGCTGTCCTGGAGT TCAATCGTCGTCAAACAACTCGCAGCAGAAGATTGGTCGTAATCCAACGT CAGGCAAGGTCTTGAACGGGTTGACAGAATTCTCGTCGATATCAGCACGC GGCGATACAGTCGAAAATAAGCGCAGAATATATCGCGGCTGCCCAGCACG GCCTCCCCGACCTAACAACGGTGTAGTGTTGTTGTGAACGCTTGCAGTGA CCCTAACATGGAAACTGCACTCAGGTCTCTTTCTCTTGCAGTGCGGGTAA CCATTACATGGCCGCCCGGCGGCAAGCTCACCTGAACGACCTTGTGTCGA AATCGGCCTTCAAGATCAGGGTGCCTCACTTCATGGGACTATGTAGAGGG TGTGACGGACGAAACTGACCCGGTTTTAGCTGGACGACCTTCAGTCGTGA TACCCACTGCGTCCGCGTTCCCGCAACAAGATTTCTGTTCTTCTCTTCTT TCAATGTCTTCTTTTTCGGTTGTGCTTTTCGGGCGGAATTCACAGGTATT TCAGCGGGTTCCCAGCGAGTCCCCTTCCACTCAAGATGACGCTAGATTCG AGTACTTCGTCGGCACGGTTTTGCCACAAATCCTCCGGCTAAAACAGTCG CACACGGCGATGTTCATACCGTCCTACTTCGACTACGTCCGCGTCAGGAA CTATCTCTTGAAGAACCAGGCGAGCGTGGCCAATGTGCACGAGTACTCCC GTGGATCAGAGGTGAGCCAACGGCATATGCTCGTTTGTCGGATTCCGAGG GATATAGCACGTTAC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10250:340..6654-

>mRNA_H-fluviatilis_contig10250.554.1 ID=mRNA_H-fluviatilis_contig10250.554.1|Name=mRNA_H-fluviatilis_contig10250.554.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=5346bp|location=Sequence derived from alignment at H-fluviatilis_contig10250:340..6654- (Heribaudiella fluviatilis SAG_13_90)
ATGGGTAATCGTGGGAAAGGAGCAAAAGGGAAATCCTCCAAGCGAGGCAG
GAAGGGCAAAAAAGGTGCAGTCGGCAAGGCCTGCGCCAAGTGGGGCGATG
AACAGACAGCGGCAGACCAGGAGGACAGCGCGCCGGTCAAGAAGAAACGC
CGCGTAACGCAGATGGGTAATCGTGGGAAAGGAGCAAAAGGGAAATCCTC
CAAGCGAGGCAGGAAGGGCAAAAAAGGTGCAGTCGGCAAGGCCTGCGCCA
AGTGGGGCGATGAACAGACAGCGGCAGACCAGGAGGACAGCGCGCCGGTC
AAGAAGAAACGCCGCGTAACGCAGGAAACCCAAGATCGACAGCGAAGGGT
AAAGCTCATGGAGCTCGCCCGGGCCAAAGAACAGCAGAGACGAGAGCGTC
TCAGCAAGCCGAACTACGAGCCGATCATCCATCCCGAAGCAGCTGCACCA
AAACCCAGAAAAAGGAAGCGGAAACGCCCCCTCAAACACCCTGGCGCGAG
CAGAGATACCCCTTACTACAGCAGCAGCGACGAGGAGAATCCTCACAACA
CGGGGTTCTTTGGCGCAGGGCTCGCAACCTACAACAAGCTGCTCACGGCG
TTGGAGAGCGGGAAGGGTAACTCGAAGGGCGGCTTGCTGTCCGCTGATGG
TGGTGATAGTGGTGGCTTCGACCATGATCTGGCCGCGGCCGTGCGGGCAC
GACGCATGCAGAGAGAAGGGCGTGACGGTTATGCTAGTAAGGACGAGAGC
GAGAGCGGAAGCAGTGGTGACCTCAAGGAACACGAGGTGGAGGACGCCGA
CGGCTCTGCTGAGGAAGAGTCGGAGGGCGAGCTGGACACGGAAGCGAAAA
TCGGAAAAGTAAATCAACAGGAGCAAGAGATGATCGGGGTGGAGAACCTG
GCTGGTGGAGACGGTTTATCAATTTCCAACGGACAGCTTCACGGTAAAAG
CAGAGAGCAGAATGGTGGACAGGAAGGAGGGGATGACAGAGCCGAGGCAG
ATCTTTACGAGGCCGTTGAGAGCGGTGACCTGGGTGTTGACGAGGACAAG
GAGCATTCTGGCGCAGCGATCAACGGAGGAACCGTAAGCAGAGACGAGTT
CAACCGTCATTTCGTGTCTACTCCTGTCTTCCCGCCAGAAGAGGCGGCAC
AGATGCTGGCCTCCTCAGCACGTCCGATCTTTAGGCCTCTGGCGAACACG
AGCGGGCTGCGCAAGTGGGAAGCCGCCGGACTTTCCGTTTCTGCATCGAA
GAGCGCCGACCTTCCGCCCGTCCTCGCCCCCGACGCGAATCTGTCTCGGG
AGCTTGGGGTTTTGCCGTCCCTCGCGGACGGGTGGGACACAAACAACGAG
GGGATCTCGTCGCCGTCGAGAAAGGTGCAGTCTCTCATAATACCGCCGAT
CATGGGCTACCTGGATATGCTGTACTGTGGGTGGCGGGACGAGGACGCTG
GGGCGATTCGGAGGTCGTATGCCCTGCACGCGCTCAACCACGCGCTTACG
TCCCAGCGCCGGGTGTTGCGACATACGGTTAAGCTGCGTAAGGCGGCGGA
GGAACTGCGAATGGCCGAAGAGGCGGCTCGTGAAGAGAAGAGAGACGCGG
CCGCGAACAGCGGACAATTGTCGAGAAAACTTGAGAACGGAATTGGCGTG
ATATCGCAGGGGTCGTCGAACCACCAGGACGCAAACGGCTGCGAGGTTAC
GCCTCCAGCGGCGGCGGTAACGCAATCAGAGGGTAAGATGATCGCAGACC
CGGACTTGGACGAGTGGCAGCGGGATCAAGGTTTTACCCGTCCTAAGGTG
CTCGTCTTGCTGCCCTTTCGGGCGCTCGCGCACGAGGTCGTGGAGATCAT
GATCGGCCTCTTGGGTCCGAAGACCGTCGTCATCAACAAAGAACGGTTCG
ACGACGAGTACGGACCGGACAAGGACGGCGACGACCTCGGGCTTGACGAT
GACCCGAGCGGGAAGAAGACCGAGCGAGCGAAAGCCGTTGTCGAGCGCAA
GCCGTCGGACTGGAAAGCGTTGCTGGGGGAAGGACGTAACGTCGACGATA
TGTTCACGATCGGGATGTCGATATCTCCGGGCGGTGGTAAGGGTAAGCCG
GGAGCGGGGAAAGGCGTCGGCGTGCGGCTGTACTGCGACTTTTACAACAG
CGACATTGTCATCGCGTCTCCTGTGGCTTTGCACCGCGCGTCCGTTCCGA
GCGGCGGGGAAGAGTTCAACGACGACGTAGACGCGGATTTTTTATCGAGC
GTCGAGGTTTGCATCTTGGACAGGGCCGACGTTTTCCTCATGCAAAACTG
GGCCTACGTTCCCGAGATCGCGGAGGTTCTTAACGCGAGGCCTTCTGGCG
ACCGGGCCGCGCGCGTGGATTTTTCGCGAGTGCGTCACTCGTTTCTTCAC
GACCAGGGTCGGCTCTTCCGACAGACGTTGATCTTCAGCGCTTTCCAGGA
AACCCAAGATCGACAGCGAAGGGTAAAGCTCATGGAGCTCGCCCGGGCCA
AAGAACAGCAGAGACGAGAGCGTCTCAGCAAGCCGAACTACGAGCCGATC
ATCCATCCCGAAGCAGCTGCACCAAAACCCAGAAAAAGGAAGCGGAAACG
CCCCCTCAAACACCCTGGCGCGAGCAGAGATACCCCTTACTACAGCAGCA
GCGACGAGGAGAATCCTCACAACACGGGGTTCTTTGGCGCAGGGCTCGCA
ACCTACAACAAGCTGCTCACGGCGTTGGAGAGCGGGAAGGGTAACTCGAA
GGGCGGCTTGCTGTCCGCTGATGGTGGTGATAGTGGTGGCTTCGACCATG
ATCTGGCCGCGGCCGTGCGGGCACGACGCATGCAGAGAGAAGGGCGTGAC
GGTTATGCTAGTAAGGACGAGAGCGAGAGCGGAAGCAGTGGTGACCTCAA
GGAACACGAGGTGGAGGACGCCGACGGCTCTGCTGAGGAAGAGTCGGAGG
GCGAGCTGGACACGGAAGCGAAAATCGGAAAAGTAAATCAACAGGAGCAA
GAGATGATCGGGGTGGAGAACCTGGCTGGTGGAGACGGTTTATCAATTTC
CAACGGACAGCTTCACGGTAAAAGCAGAGAGCAGAATGGTGGACAGGAAG
GAGGGGATGACAGAGCCGAGGCAGATCTTTACGAGGCCGTTGAGAGCGGT
GACCTGGGTGTTGACGAGGACAAGGAGCATTCTGGCGCAGCGATCAACGG
AGGAACCGTAAGCAGAGACGAGTTCAACCGTCATTTCGTGTCTACTCCTG
TCTTCCCGCCAGAAGAGGCGGCACAGATGCTGGCCTCCTCAGCACGTCCG
ATCTTTAGGCCTCTGGCGAACACGAGCGGGCTGCGCAAGTGGGAAGCCGC
CGGACTTTCCGTTTCTGCATCGAAGAGCGCCGACCTTCCGCCCGTCCTCG
CCCCCGACGCGAATCTGTCTCGGGAGCTTGGGGTTTTGCCGTCCCTCGCG
GACGGGTGGGACACAAACAACGAGGGGATCTCGTCGCCGTCGAGAAAGGT
GCAGTCTCTCATAATACCGCCGATCATGGGCTACCTGGATATGCTGTACT
GTGGGTGGCGGGACGAGGACGCTGGGGCGATTCGGAGGTCGTATGCCCTG
CACGCGCTCAACCACGCGCTTACGTCCCAGCGCCGGGTGTTGCGACATAC
GGTTAAGCTGCGTAAGGCGGCGGAGGAACTGCGAATGGCCGAAGAGGCGG
CTCGTGAAGAGAAGAGAGACGCGGCCGCGAACAGCGGACAATTGTCGAGA
AAACTTGAGAACGGAATTGGCGTGATATCGCAGGGGTCGTCGAACCACCA
GGACGCAAACGGCTGCGAGGTTACGCCTCCAGCGGCGGCGGTAACGCAAT
CAGAGGGTAAGATGATCGCAGACCCGGACTTGGACGAGTGGCAGCGGGAT
CAAGGTTTTACCCGTCCTAAGGTGCTCGTCTTGCTGCCCTTTCGGGCGCT
CGCGCACGAGGTCGTGGAGATCATGATCGGCCTCTTGGGTCCGAAGACCG
TCGTCATCAACAAAGAACGGTTCGACGACGAGTACGGACCGGACAAGGAC
GGCGACGACCTCGGGCTTGACGATGACCCGAGCGGGAAGAAGACCGAGCG
AGCGAAAGCCGTTGTCGAGCGCAAGCCGTCGGACTGGAAAGCGTTGCTGG
GGGAAGGACGTAACGTCGACGATATGTTCACGATCGGGATGTCGATATCT
CCGGGCGGTGGTAAGGGTAAGCCGGGAGCGGGGAAAGGCGTCGGCGTGCG
GCTGTACTGCGACTTTTACAACAGCGACATTGTCATCGCGTCTCCTGTGG
CTTTGCACCGCGCGTCCGTTCCGAGCGGCGGGGAAGAGTTCAACGACGAC
GTAGACGCGGATTTTTTATCGAGCGTCGAGGTTTGCATCTTGGACAGGGC
CGACGTTTTCCTCATGCAAAACTGGGCCTACGTTCCCGAGATCGCGGAGG
TTCTTAACGCGAGGCCTTCTGGCGACCGGGCCGCGCGCGTGGATTTTTCG
CGAGTGCGTCACTCGTTTCTTCACGACCAGGGTCGGCTCTTCCGACAGAC
GTTGATCTTCAGCGCTTTCCAGGATGCCAACTTGAACGCGCTGGTTTCGA
GACATTGCCGGAACCATGACGGAATTGTGAGAGTTTGGCGACCCAGCGGG
GACGGGCACATCTGCAATGTGGCGCTCCAGGCTAAGCAGGATGCCAACTT
GAACGCGCTGGTTTCGAGACATTGCCGGAACCATGACGGAATTGTGAGAG
TTTGGCGACCCAGCGGGGACGGGCACATCTGCAATGTGGCGCTCCAGGCT
AAGCAGGTATTTCAGCGGGTTCCCAGCGAGTCCCCTTCCACTCAAGATGA
CGCTAGATTCGAGTACTTCGTCGGCACGGTTTTGCCACAAATCCTCCGGC
TAAAACAGTCGCACACGGCGATGTTCATACCGTCCTACTTCGACTACGTC
CGCGTCAGGAACTATCTCTTGAAGAACCAGGCGAGCGTGGCCAATGTGCA
CGAGTACTCCCGTGGATCAGAGGTGAGCCAACGGCATATGCTCGTTTGTC
GGATTCCGAGGGATATAGCACGTTACGTATTTCAGCGGGTTCCCAGCGAG
TCCCCTTCCACTCAAGATGACGCTAGATTCGAGTACTTCGTCGGCACGGT
TTTGCCACAAATCCTCCGGCTAAAACAGTCGCACACGGCGATGTTCATAC
CGTCCTACTTCGACTACGTCCGCGTCAGGAACTATCTCTTGAAGAACCAG
GCGAGCGTGGCCAATGTGCACGAGTACTCCCGTGGATCAGAGGTGAGCCA
ACGGCATATGCTCGTTTGTCGGATTCCGAGGGATATAGCACGTTAC
back to top