mRNA_H-fluviatilis_contig102479.548.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102479.548.1
Unique NamemRNA_H-fluviatilis_contig102479.548.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: D7G2Z0_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.010e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV
Sbjct:  227 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 260
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A836CM56_9STRA (Soluble NSF attachment protein receptor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM56_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.490e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            KSIE+LS IFKELAVLVIDQGTILDRIDFNMEQV
Sbjct:  224 KSIEELSMIFKELAVLVIDQGTILDRIDFNMEQV 257
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A7S3JZH1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.660e-10
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            +SI++LSTIFKELAVLVIDQGTILDRIDFNMEQV
Sbjct:  234 ESIQELSTIFKELAVLVIDQGTILDRIDFNMEQV 267
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: F0Y7H9_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7H9_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 4.960e-10
Identity = 30/34 (88.24%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            +SI++LSTIFKELAVLVIDQGT+LDRIDFNMEQV
Sbjct:  227 ESIQELSTIFKELAVLVIDQGTVLDRIDFNMEQV 260
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A7S2RXE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXE8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.390e-10
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            +SIE+LS IFKELAVLVIDQGTILDRID+NMEQV
Sbjct:   70 ESIEELSQIFKELAVLVIDQGTILDRIDYNMEQV 103
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A7S2F4K0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4K0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.670e-10
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            KSIEDLS +F+ELAVLVIDQGTILDRID+NMEQV
Sbjct:  153 KSIEDLSQMFRELAVLVIDQGTILDRIDYNMEQV 186
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A7S2SRN9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRN9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.930e-10
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            +SIE+LS IFKELAVLVIDQGTILDRIDFNMEQV
Sbjct:  219 QSIEELSQIFKELAVLVIDQGTILDRIDFNMEQV 252
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A7S2CCQ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCQ1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-9
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            ++IE+LS IFKELAVLVIDQGTILDRID+NMEQV
Sbjct:   37 QNIEELSAIFKELAVLVIDQGTILDRIDYNMEQV 70
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A5D6Y5E0_9STRA (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-9
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            +SI +L+TIFKELAVLVIDQGTILDRID+NMEQV
Sbjct:   80 ESITELATIFKELAVLVIDQGTILDRIDYNMEQV 113
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BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Match: A0A835YLG5_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-9
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV 102
            KSIE+LS IFKELAV+VIDQGT+LDRID+NMEQV
Sbjct:  229 KSIEELSAIFKELAVMVIDQGTMLDRIDYNMEQV 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102479.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Z0_ECTSI1.010e-11100.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CM56_9STRA2.490e-1094.12Soluble NSF attachment protein receptor (Fragment)... [more]
A0A7S3JZH1_9STRA3.660e-1091.18Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
F0Y7H9_AURAN4.960e-1088.24t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2RXE8_9STRA5.390e-1088.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2F4K0_9STRA8.670e-1088.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SRN9_9STRA8.930e-1091.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CCQ1_9STRA1.110e-985.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6Y5E0_9STRA1.620e-985.29t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835YLG5_9STRA2.420e-985.29Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102479contigH-fluviatilis_contig102479:693..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue5.6e-09
Seed eggNOG ortholog2880.D7G2Z0
Preferred nameSTX16
KEGG koko:K08489,ko:K09611
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0000323,GO:0001505,GO:0002790,GO:0002831,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006896,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019637,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031302,GO:0031303,GO:0031347,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032101,GO:0032258,GO:0032527,GO:0032588,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0048583,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072665,GO:0080134,GO:0090161,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1900150,GO:1901135,GO:1901564,GO:1903509
EggNOG free text desc.Glycosyltransferase like family
EggNOG OGsCOG5325@1,KOG0809@2759
COG Functional cat.HMU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.4167504-CDS-H-fluviatilis_contig102479:692..7941622929064.4167504-CDS-H-fluviatilis_contig102479:692..794Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102479 693..794 -
1691135168.7702975-CDS-H-fluviatilis_contig102479:692..7941691135168.7702975-CDS-H-fluviatilis_contig102479:692..794Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102479 693..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102479.548.1prot_H-fluviatilis_contig102479.548.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102479 693..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102479.548.1

>prot_H-fluviatilis_contig102479.548.1 ID=prot_H-fluviatilis_contig102479.548.1|Name=mRNA_H-fluviatilis_contig102479.548.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=34bp
KSIEDLSTIFKELAVLVIDQGTILDRIDFNMEQV
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mRNA from alignment at H-fluviatilis_contig102479:693..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102479.548.1 ID=mRNA_H-fluviatilis_contig102479.548.1|Name=mRNA_H-fluviatilis_contig102479.548.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=102bp|location=Sequence derived from alignment at H-fluviatilis_contig102479:693..794- (Heribaudiella fluviatilis SAG_13_90)
AAAAGCATTGAAGATTTGTCGACTATCTTCAAGGAGCTGGCGGTGCTCGT
GATTGACCAGGGCACTATCCTCGATCGAATTGACTTCAACATGGAGCAGG
TA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102479:693..794-

>mRNA_H-fluviatilis_contig102479.548.1 ID=mRNA_H-fluviatilis_contig102479.548.1|Name=mRNA_H-fluviatilis_contig102479.548.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=204bp|location=Sequence derived from alignment at H-fluviatilis_contig102479:693..794- (Heribaudiella fluviatilis SAG_13_90)
AAAAGCATTGAAGATTTGTCGACTATCTTCAAGGAGCTGGCGGTGCTCGT
GATTGACCAGGGCACTATCCTCGATCGAATTGACTTCAACATGGAGCAGG
TAAAAAGCATTGAAGATTTGTCGACTATCTTCAAGGAGCTGGCGGTGCTC
GTGATTGACCAGGGCACTATCCTCGATCGAATTGACTTCAACATGGAGCA
GGTA
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