mRNA_H-fluviatilis_contig102454.545.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102454.545.1
Unique NamemRNA_H-fluviatilis_contig102454.545.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102454.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102454contigH-fluviatilis_contig102454:40..419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102454.545.1prot_H-fluviatilis_contig102454.545.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102454 41..419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.2357693-CDS-H-fluviatilis_contig102454:40..921622929064.2357693-CDS-H-fluviatilis_contig102454:40..92Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 41..92 -
1691135168.7155502-CDS-H-fluviatilis_contig102454:40..921691135168.7155502-CDS-H-fluviatilis_contig102454:40..92Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 41..92 -
1622929064.2484872-CDS-H-fluviatilis_contig102454:123..1691622929064.2484872-CDS-H-fluviatilis_contig102454:123..169Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 124..169 -
1691135168.7263181-CDS-H-fluviatilis_contig102454:123..1691691135168.7263181-CDS-H-fluviatilis_contig102454:123..169Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 124..169 -
1622929064.2608635-CDS-H-fluviatilis_contig102454:199..4191622929064.2608635-CDS-H-fluviatilis_contig102454:199..419Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 200..419 -
1691135168.7338219-CDS-H-fluviatilis_contig102454:199..4191691135168.7338219-CDS-H-fluviatilis_contig102454:199..419Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102454 200..419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102454.545.1

>prot_H-fluviatilis_contig102454.545.1 ID=prot_H-fluviatilis_contig102454.545.1|Name=mRNA_H-fluviatilis_contig102454.545.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=106bp
APATPTTPTIVELPPPTPAVQPDAATDAADAATAPLDAFASAEPAAAAEP
AALVEAEAQPDVEPVLAIEAESKDASPATPPADAPVPESGDVNINAEPVL
PPAADA
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mRNA from alignment at H-fluviatilis_contig102454:40..419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102454.545.1 ID=mRNA_H-fluviatilis_contig102454.545.1|Name=mRNA_H-fluviatilis_contig102454.545.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=380bp|location=Sequence derived from alignment at H-fluviatilis_contig102454:40..419- (Heribaudiella fluviatilis SAG_13_90)
GCACCGGCCACGCCGACCACGCCAACCATCGTCGAGCTGCCGCCACCAAC
ACCGGCGGTGCAGCCTGATGCTGCGACTGATGCTGCTGATGCTGCTACCG
CTCCTCTTGATGCGTTTGCTTCTGCGGAACCCGCAGCTGCAGCAGAGCCC
GCAGCACTGGTTGAAGCAGAGGCTCAACCCGACGTTGAGCCAGTTCTCGC
AATCGAGGCTGAGAGCAAAGGTATCAACCTCTTGTTGACGTTGTGCGTAG
ACGCCTCCCCAGCAACTCCTCCAGCGGACGCACCTGTGCCCGAGAGGTGA
GGGGTTGTTCGCGAACTCACACTGCAGTGGCGATGTAAATATCAATGCTG
AACCTGTGTTGCCTCCTGCTGCCGATGCAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102454:40..419-

>mRNA_H-fluviatilis_contig102454.545.1 ID=mRNA_H-fluviatilis_contig102454.545.1|Name=mRNA_H-fluviatilis_contig102454.545.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=636bp|location=Sequence derived from alignment at H-fluviatilis_contig102454:40..419- (Heribaudiella fluviatilis SAG_13_90)
GCACCGGCCACGCCGACCACGCCAACCATCGTCGAGCTGCCGCCACCAAC
ACCGGCGGTGCAGCCTGATGCTGCGACTGATGCTGCTGATGCTGCTACCG
CTCCTCTTGATGCGTTTGCTTCTGCGGAACCCGCAGCTGCAGCAGAGCCC
GCAGCACTGGTTGAAGCAGAGGCTCAACCCGACGTTGAGCCAGTTCTCGC
AATCGAGGCTGAGAGCAAAGGCACCGGCCACGCCGACCACGCCAACCATC
GTCGAGCTGCCGCCACCAACACCGGCGGTGCAGCCTGATGCTGCGACTGA
TGCTGCTGATGCTGCTACCGCTCCTCTTGATGCGTTTGCTTCTGCGGAAC
CCGCAGCTGCAGCAGAGCCCGCAGCACTGGTTGAAGCAGAGGCTCAACCC
GACGTTGAGCCAGTTCTCGCAATCGAGGCTGAGAGCAAAGACGCCTCCCC
AGCAACTCCTCCAGCGGACGCACCTGTGCCCGAGAGACGCCTCCCCAGCA
ACTCCTCCAGCGGACGCACCTGTGCCCGAGAGTGGCGATGTAAATATCAA
TGCTGAACCTGTGTTGCCTCCTGCTGCCGATGCATGGCGATGTAAATATC
AATGCTGAACCTGTGTTGCCTCCTGCTGCCGATGCA
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