mRNA_H-fluviatilis_contig10245.544.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10245.544.1
Unique NamemRNA_H-fluviatilis_contig10245.544.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10245.544.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.280e-22
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 GGGLMMR---AKKGKSGRGMTNIGRVVVTRERMAKFKEPQKVMVSNLDYSLTEQDIWRFCSQVGTVARVKLIRKRNAKTSKG 237
            GGGL MR   + KGK+G G+TNIGRVV TR+R+ + +EP KVM+SNLDYSLTE D+  FCS  G VA VKL++K  AKTSKG
Sbjct:   57 GGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKG 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10245.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE8.280e-2263.41RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10245contigH-fluviatilis_contig10245:7193..8078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_002780.1
Exons2
Model size240
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10245.544.1prot_H-fluviatilis_contig10245.544.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10245 7193..8066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.1093888-CDS-H-fluviatilis_contig10245:7192..73181622929064.1093888-CDS-H-fluviatilis_contig10245:7192..7318Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10245 7193..7318 -
1691135168.68768-CDS-H-fluviatilis_contig10245:7192..73181691135168.68768-CDS-H-fluviatilis_contig10245:7192..7318Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10245 7193..7318 -
1622929064.121306-CDS-H-fluviatilis_contig10245:7964..80661622929064.121306-CDS-H-fluviatilis_contig10245:7964..8066Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10245 7965..8066 -
1691135168.6970375-CDS-H-fluviatilis_contig10245:7964..80661691135168.6970375-CDS-H-fluviatilis_contig10245:7964..8066Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10245 7965..8066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.1323364-UTR-H-fluviatilis_contig10245:8066..80781622929064.1323364-UTR-H-fluviatilis_contig10245:8066..8078Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10245 8067..8078 -
1691135168.705302-UTR-H-fluviatilis_contig10245:8066..80781691135168.705302-UTR-H-fluviatilis_contig10245:8066..8078Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10245 8067..8078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10245.544.1

>prot_H-fluviatilis_contig10245.544.1 ID=prot_H-fluviatilis_contig10245.544.1|Name=mRNA_H-fluviatilis_contig10245.544.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=76bp
MMRAKKGKSGRGMTNIGRVVVTRERMAKFKEPQKVMVSNLDYSLTEQDIW
RFCSQVGTVARVKLIRKRNAKTSKG*
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mRNA from alignment at H-fluviatilis_contig10245:7193..8078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10245.544.1 ID=mRNA_H-fluviatilis_contig10245.544.1|Name=mRNA_H-fluviatilis_contig10245.544.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=886bp|location=Sequence derived from alignment at H-fluviatilis_contig10245:7193..8078- (Heribaudiella fluviatilis SAG_13_90)
GGCGGGGGGCTGATGATGCGAGCGAAGAAAGGGAAAAGCGGTCGAGGAAT
GACCAACATTGGGAGGGTGGTCGTGACAAGAGAGCGCATGGCCAAATTCA
AAGAGCCGCAAAAGGTGAGAGTGACCTGCCTGCGTTTCGAGTTTTGGTTT
GTGAACAACTGTTTCAAACTAATTATCGTGAACTCGCGCGCCCGCCCAGA
ATCTCGCGACATGCATGCTCAGACAGCAGCTTTGTTCGTCGTCGGCGTTA
CGGTGCGCGATGGAATGGTACCTTGTGGACAGAACGCAAAAAGCAGTAGC
TCAAAGTTCAGATTTCGAGTACGAACCTTGTACAGCACAGATCGGAAGAA
CATCGTTCACTATTCGGCTTGGGAATGCGTTTTTTTGCCCCGCATTGAGG
GTGTTCCCGGAGAATATGGTGTTTGAGATGGGCATGGAGTTTATGTTCCT
GCGGAGGTATGGCATCTGTACATGTACCCCACTGGCGGGAAACATGAGCA
CCATGGATGTGTCGGTGCACGTTGGTGTATTTCCCGCTGAAGATAGATCG
GTGTCAAACCATATCGGTACTATACGAGAAAGACTAATTTGGTTCAGTAT
TTCGTTGCCGGGTAGCTCTCGGGGTCACTTACTGCCGCCTACCCCGTAGT
TGTATTCAGTGAAAAAGCAAGAAAAGAAAAGGGGTGCGATTGGTGTCATT
TGCATACGCGGCTGCGGTTTCCCTCTTGATAGCCTTCCACGAACAAGATG
TTTTTTGCAGGTCATGGTCTCAAACCTGGACTATAGCCTGACCGAGCAGG
ACATATGGCGGTTCTGCAGCCAGGTGGGAACTGTCGCGCGCGTGAAGCTC
ATCAGGAAGCGGAACGCCAAGACGTCGAAGGGGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10245:7193..8078-

>mRNA_H-fluviatilis_contig10245.544.1 ID=mRNA_H-fluviatilis_contig10245.544.1|Name=mRNA_H-fluviatilis_contig10245.544.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=456bp|location=Sequence derived from alignment at H-fluviatilis_contig10245:7193..8078- (Heribaudiella fluviatilis SAG_13_90)
ATGATGCGAGCGAAGAAAGGGAAAAGCGGTCGAGGAATGACCAACATTGG
GAGGGTGGTCGTGACAAGAGAGCGCATGGCCAAATTCAAAGAGCCGCAAA
AGATGATGCGAGCGAAGAAAGGGAAAAGCGGTCGAGGAATGACCAACATT
GGGAGGGTGGTCGTGACAAGAGAGCGCATGGCCAAATTCAAAGAGCCGCA
AAAGGTCATGGTCTCAAACCTGGACTATAGCCTGACCGAGCAGGACATAT
GGCGGTTCTGCAGCCAGGTGGGAACTGTCGCGCGCGTGAAGCTCATCAGG
AAGCGGAACGCCAAGACGTCGAAGGGGTGAGTCATGGTCTCAAACCTGGA
CTATAGCCTGACCGAGCAGGACATATGGCGGTTCTGCAGCCAGGTGGGAA
CTGTCGCGCGCGTGAAGCTCATCAGGAAGCGGAACGCCAAGACGTCGAAG
GGGTGA
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