mRNA_H-fluviatilis_contig102442.543.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102442.543.1
Unique NamemRNA_H-fluviatilis_contig102442.543.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102442.543.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.330e-17
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   31 SEKPLDADTLIPLLVYALVNANLPRVHESLNFIRNFGGPLLSGEHAYYVTCM 186
            S+KPLDAD+L+PLLV++L +ANLPRVHE+LNF+RNF G    GE  YYVTC+
Sbjct:   22 SDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCL 73
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BLAST of mRNA_H-fluviatilis_contig102442.543.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.140e-15
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   31 SEKPLDADTLIPLLVYALVNANLPRVHESLNFIRNFGGPLLSGEHAYYVTCM 186
            S+KPLDAD+L+PLLV++L +ANLPRVHE+L+F+RNF G    GE  YYVTC+
Sbjct:  961 SDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCL 1012
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BLAST of mRNA_H-fluviatilis_contig102442.543.1 vs. uniprot
Match: A0A7S4T128_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T128_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 3.270e-5
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   37 KPLDADTLIPLLVYALVNANLPRVHESLNFIRNFGGPL-LSGEHAYYVTCM 186
            +PL AD  +P+L++AL+ AN PR+H ++ F+  F  P  L  E AYY+T +
Sbjct:  202 RPLSADDFLPMLIFALIMANPPRLHSNVEFVAAFRHPSRLVAEDAYYLTTL 252
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BLAST of mRNA_H-fluviatilis_contig102442.543.1 vs. uniprot
Match: A0A6U0URX0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URX0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.530e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   43 LDADTLIPLLVYALVNANLPRVHESLNFIRNFGGPLLSGEHAYYVTCM 186
            L ADTL PL+++A++NA +P +H  L+F   F      GE AYY TC+
Sbjct:  342 LSADTLFPLILFAVINAEIPPMHSVLHFWNTFSRGDGRGEGAYYRTCV 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102442.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS46_ECTSI6.330e-1767.31VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK77_9PHAE4.140e-1565.38VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S4T128_9DINO3.270e-543.14Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6U0URX0_9STRA4.530e-545.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102442contigH-fluviatilis_contig102442:289..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D7FS46
EggNOG free text desc.Vacuolar sorting protein 9 (VPS9) domain
EggNOG OGs29NWZ@1,2QTH6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.0239594-CDS-H-fluviatilis_contig102442:288..4771622929064.0239594-CDS-H-fluviatilis_contig102442:288..477Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102442 289..477 -
1691135168.678051-CDS-H-fluviatilis_contig102442:288..4771691135168.678051-CDS-H-fluviatilis_contig102442:288..477Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102442 289..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102442.543.1prot_H-fluviatilis_contig102442.543.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102442 289..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102442.543.1

>prot_H-fluviatilis_contig102442.543.1 ID=prot_H-fluviatilis_contig102442.543.1|Name=mRNA_H-fluviatilis_contig102442.543.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=63bp
MPACSFPYKASEKPLDADTLIPLLVYALVNANLPRVHESLNFIRNFGGPL
LSGEHAYYVTCM*
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mRNA from alignment at H-fluviatilis_contig102442:289..477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102442.543.1 ID=mRNA_H-fluviatilis_contig102442.543.1|Name=mRNA_H-fluviatilis_contig102442.543.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=189bp|location=Sequence derived from alignment at H-fluviatilis_contig102442:289..477- (Heribaudiella fluviatilis SAG_13_90)
ATGCCCGCTTGTTCTTTTCCCTACAAGGCCTCGGAAAAGCCGCTAGATGC
GGATACTCTCATCCCCCTGCTGGTGTACGCCCTGGTGAACGCAAACCTTC
CCCGAGTGCACGAGTCCCTGAATTTTATCAGAAATTTTGGAGGGCCCTTA
TTGAGCGGAGAGCACGCCTACTACGTGACGTGCATGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102442:289..477-

>mRNA_H-fluviatilis_contig102442.543.1 ID=mRNA_H-fluviatilis_contig102442.543.1|Name=mRNA_H-fluviatilis_contig102442.543.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=378bp|location=Sequence derived from alignment at H-fluviatilis_contig102442:289..477- (Heribaudiella fluviatilis SAG_13_90)
ATGCCCGCTTGTTCTTTTCCCTACAAGGCCTCGGAAAAGCCGCTAGATGC
GGATACTCTCATCCCCCTGCTGGTGTACGCCCTGGTGAACGCAAACCTTC
CCCGAGTGCACGAGTCCCTGAATTTTATCAGAAATTTTGGAGGGCCCTTA
TTGAGCGGAGAGCACGCCTACTACGTGACGTGCATGTGAATGCCCGCTTG
TTCTTTTCCCTACAAGGCCTCGGAAAAGCCGCTAGATGCGGATACTCTCA
TCCCCCTGCTGGTGTACGCCCTGGTGAACGCAAACCTTCCCCGAGTGCAC
GAGTCCCTGAATTTTATCAGAAATTTTGGAGGGCCCTTATTGAGCGGAGA
GCACGCCTACTACGTGACGTGCATGTGA
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