mRNA_H-fluviatilis_contig102420.542.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102420.542.1
Unique NamemRNA_H-fluviatilis_contig102420.542.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A6L5FEJ9_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FEJ9_9HYPH)

HSP 1 Score: 458 bits (1179), Expect = 1.760e-159
Identity = 224/269 (83.27%), Postives = 251/269 (93.31%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTEGKPD+GL K+RKLVLSD+VEVM G+I+SAVALAVAPYLSSQR+PLV+SNASTD L+G KCDRY+FRASYS AQITEPIGLWMAK+APKN++ILASD+VAPHEYVAA K+GYLAGGG I GE + PF RTQDYGPYISQAR+ANPGA+F+V+FA EALLFVKQYDSFGMKA TPLFGP+GLTPPVLRKAQGP+A G+IS SNYV ELD PENR FREAYKKKFGEDPEEF+VMGYD++RFII+AVKARNGDTKDRPALVGAIEKV+
Sbjct:  100 EDTEGKPDMGLAKSRKLVLSDRVEVMTGIISSAVALAVAPYLSSQRVPLVISNASTDLLSGAKCDRYVFRASYSCAQITEPIGLWMAKHAPKNLYILASDFVAPHEYVAAMKRGYLAGGGMIVGETFTPFARTQDYGPYISQARSANPGAIFAVYFAAEALLFVKQYDSFGMKAKTPLFGPVGLTPPVLRKAQGPSALGVISPSNYVVELDTPENRAFREAYKKKFGEDPEEFSVMGYDAMRFIIEAVKARNGDTKDRPALVGAIEKVA 368          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: UPI0018693427 (ABC transporter substrate-binding protein n=1 Tax=Oricola sp. NBU1457 TaxID=2775868 RepID=UPI0018693427)

HSP 1 Score: 258 bits (660), Expect = 2.440e-81
Identity = 124/269 (46.10%), Postives = 179/269 (66.54%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            ED+E KP VG+ K RKLVL D+V+ M G+++SAV  AV  ++   ++PL+++NA  D  TG  C +Y+ R S+S+ Q+  P+G WMA+   K ++ LA DY A H+ + AF + + A GG I G  Y PF +TQD+GPY++ A+AA+P A+F  +  GEA+ FVKQYDSFG+K + PL+G   LT P+  KA+GPAA G+ ++ +YV  LD PEN+ F  A+K KF   P E+AV GYD+ R +++AVKA      DR ++   + KVS
Sbjct:   67 EDSEAKPPVGVAKARKLVLQDEVDAMVGIVSSAVLGAVRDFVDGSKVPLIVANAGNDAATGASCSKYIVRVSFSNGQVNRPMGSWMAEQGIKKVYTLAPDYAAGHQMIDAFTESFTAAGGEIVGSEYTPFGKTQDFGPYLTTAKAASPDAIFVFYAGGEAISFVKQYDSFGIKKDIPLYGSGFLTSPLYVKAEGPAAIGVKTSLHYVPTLDTPENKAFVAAFKAKFDRPPSEYAVQGYDAARVLVEAVKA---GANDRESIAEGLTKVS 332          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: UPI001AD8CFB5 (ABC transporter substrate-binding protein n=2 Tax=Roseibium aggregatum TaxID=187304 RepID=UPI001AD8CFB5)

HSP 1 Score: 256 bits (653), Expect = 2.850e-80
Identity = 131/270 (48.52%), Postives = 186/270 (68.89%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAG-EALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            ED+E KP VG+ K RKLVL D+V+ M G+++SAV  AV  ++   ++PLV++NA  D  TG+ C RY+ R S+S+AQI  P+G WMA+   K ++ LA DY A H+ + AF + + A GG I G  Y PF +TQD+GPY+++A+AA+P A++ VF+AG EA+ FVKQYDSFG+K + PL+G   LT P+   A+GPAA G+ +A +YV  ++ PEN+ F  A+K KF   P EFAV GYD+ R +++AVKA  G T DR ++   + KVS
Sbjct:   68 EDSEAKPQVGVAKARKLVLQDEVDAMVGIVSSAVLGAVRDFVDGSKVPLVVANAGNDEATGKNCSRYITRVSFSNAQINRPMGEWMARIGVKKVYTLAPDYAAGHQMIDAFAESFKAAGGEIVGSEYTPFGKTQDFGPYLTKAKAASPDAIY-VFYAGKEAITFVKQYDSFGLKKDIPLYGSGFLTSPLYVAAEGPAAIGVTTALHYVPTINTPENKAFVAAFKAKFDRAPSEFAVQGYDAGRVLVEAVKA--GAT-DRASITEQLSKVS 333          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A7S8C4C6_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C4C6_9HYPH)

HSP 1 Score: 248 bits (632), Expect = 4.010e-77
Identity = 122/269 (45.35%), Postives = 178/269 (66.17%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTE KP VGL K RKLVL D+V+V+ G+++S V  AV  ++   ++PL+++NA  D  TG +C +Y+ R S+S+ Q+  P+G WM     + ++ LA DY A  + V AF + +   GG I GE + PF +TQD+GPY+++A+AA P A+F  +  GEA+ FVKQYDSFG+KA+ PL+G   LT P+   A+GPAA G+++A +YV  +D PENR F EA++ +    P E+AV GYD+ R +I+AVK+       R AL  A+ KV+
Sbjct:   68 EDTEVKPPVGLAKARKLVLEDEVDVIVGLVSSGVLGAVRDFVDGAQVPLIVANAGNDDATGSRCSKYITRVSFSNGQVNRPMGQWMYDQGIRKVYTLAPDYAAGRQMVGAFAEAFRQAGGEIVGEDFTPFRKTQDFGPYLTKAKAAGPDAIFVFYAGGEAISFVKQYDSFGIKADIPLYGSGFLTSPLYVNAEGPAAEGVVTALHYVPTIDTPENRAFVEAFRARTDRAPSEYAVQGYDAGRALIEAVKS---GADSREALASALAKVT 333          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A1H8LGW4_9RHOB (Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A1H8LGW4_9RHOB)

HSP 1 Score: 247 bits (630), Expect = 9.810e-77
Identity = 127/269 (47.21%), Postives = 176/269 (65.43%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            ED E KP VGL KT+KL+L D+V+VM GV++S V  A+   +    +PL+++NA  D  TGE C  ++ R S+S+ Q+  P+G WM     K +F +A DY A  + + AF  G+ A GG + G+ +P F +TQD+GP+++ A+A+   AV+  F  GEA+ FVKQYDSFGMKA  PL+G   LT  +  +AQGPAA G+I+A +YV  LD+PEN  F  A+K+K G  P E+AV GYDS R +++AVKA  G T DR  L  A+ KVS
Sbjct:   70 EDDEVKPPVGLAKTKKLILQDEVDVMVGVVSSGVLGAIRDTVDGAGVPLIVANAGNDEATGEACSPFITRISFSNQQVNRPMGKWMVDQGVKKVFTIAPDYAAGRQMIDAFTTGFTAAGGEVVGQEWPAFQKTQDFGPFLANAKASGADAVYVFFAGGEAISFVKQYDSFGMKAELPLYGSGFLTSALYVEAQGPAAEGVITALHYVPTLDNPENAAFVAAFKEKTGRIPSEYAVHGYDSARALVEAVKA--GAT-DRETLAAALPKVS 335          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A238K6Z9_9RHOB (Peripla_BP_6 domain-containing protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A238K6Z9_9RHOB)

HSP 1 Score: 245 bits (626), Expect = 3.600e-76
Identity = 123/269 (45.72%), Postives = 172/269 (63.94%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTE KP V L K +KL+L DKV+V+AG+++S V  AV   +    +PL+++NA  D  TG  C  Y+ R S+S+ Q+  P+G WMA    K ++ LA DY A  + + AF   Y A GG I G+ + PF +TQD+GPY++QA+A+   AV+  +  GEA+ FVKQYDSFG+KA  PL+G   LT P+   A+GPAA G+I+A +YV  +D+ EN+TF EA+    G  P EFAV GYD+ R +++A K       DR AL  A+ +VS
Sbjct:   67 EDTEVKPPVALGKAKKLILQDKVDVVAGIVSSGVLGAVRDMIDGAGVPLIVANAGNDEATGADCSPYITRMSFSNGQVNRPMGAWMAAQGIKKVYTLAPDYAAGRQMIDAFAASYTAAGGEIVGQEFTPFQKTQDFGPYLAQAKASGAEAVYVFYAGGEAISFVKQYDSFGLKAELPLYGSGFLTSPLYVNAEGPAAEGVITALHYVPTIDNAENKTFAEAFTAATGRVPSEFAVQGYDAARALVEATKT---GAADREALARALRQVS 332          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A840CDL4_9RHOB (Branched-chain amino acid transport system substrate-binding protein n=2 Tax=Actibacterium TaxID=1433986 RepID=A0A840CDL4_9RHOB)

HSP 1 Score: 244 bits (624), Expect = 6.790e-76
Identity = 125/269 (46.47%), Postives = 172/269 (63.94%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTE  P VGL KTRKLVL DKV+VMAG+++S V  AV   +   ++PL+++NA  D  TGE C  Y+ R S+S+ Q+  P+G WM       ++ LA DY A H+ + AF + + A GG I G+ Y PF +TQD+GPY+++A+A+   AVF  +  GEA+ FVKQYDSFG+K + PL+G   LT  +   AQGPAA G+I+A +YV  +D  EN+ F  A+ +K G  P E+AV GYDS R +I+A K       DR  +  A+ KVS
Sbjct:   69 EDTEVSPPVGLAKTRKLVLQDKVDVMAGIVSSGVLGAVRDMVHGSKVPLIVANAGNDEATGESCSPYVVRLSFSNGQVNRPMGQWMFDQGITKVYTLAPDYAAGHQMIDAFAEAFTAAGGEIVGQEYTPFRKTQDFGPYLTKAQASGAEAVFVFYAGGEAISFVKQYDSFGLKTDLPLYGSGFLTSSLYVNAQGPAAEGVITALHYVPTIDSVENKDFVAAFTEKTGRIPSEYAVHGYDSARALIEATKT---GASDRETIAAALGKVS 334          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: UPI0003720C2F (ABC transporter substrate-binding protein n=1 Tax=Amorphus coralli TaxID=340680 RepID=UPI0003720C2F)

HSP 1 Score: 244 bits (622), Expect = 1.320e-75
Identity = 125/270 (46.30%), Postives = 179/270 (66.30%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAG-EALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTE KP VGL KTRK+VL D+V+V+ G ++S V  AV  ++   + PL+++NA  D  TGE C  Y+ R S+S++Q+  P+G WM  N  K+++ LA DY A  + + AF   +   GG + G+ Y PF  TQD+GPY+SQA++ NP AV+ VF+AG EA+ FVKQYD+FG+K NT L+G   LT P+   A+GPAA G+I + +Y+  LD PEN+ F EA +KK+   P E+ V GYD+ R  ++A+K+  G T D+ A+  A+  VS
Sbjct:   68 EDTEVKPPVGLAKTRKMVLEDQVDVLVGPVSSGVLGAVRDFVDQTKTPLIVANAGNDAATGENCSPYIVRVSFSNSQVNRPMGQWMVDNGVKSVYTLAPDYAAGQQQITAFADAFKEAGGEVVGQEYTPFRTTQDFGPYLSQAQSTNPDAVY-VFYAGSEAINFVKQYDAFGLKDNTTLYGSGFLTSPLYVDAEGPAAIGVIGSLHYIPTLDTPENKAFVEAVQKKYDRVPSEYTVQGYDAGRSFVEAIKS--GAT-DKEAIAKALPTVS 333          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: A0A386TJP7_9RHOB (ABC transporter n=2 Tax=Sulfitobacter TaxID=60136 RepID=A0A386TJP7_9RHOB)

HSP 1 Score: 243 bits (619), Expect = 4.060e-75
Identity = 123/268 (45.90%), Postives = 173/268 (64.55%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKV 804
            EDTE KP V L K +KL+L DKV+VM G+++S V  AV   +    +PL+++NA  D  TG  C  Y+ R S+S+ Q+  P+G WM +   + ++ LA DY A  + +  F + + A GG I G+ Y PF +TQD+GPY++QA+++   AVF  +  GEA+ FVKQYDSFG+KA+ PL+G   LT P+   A+GPAA G+I+A +Y   +D+PEN  F  A+K+K G  P EFAV GYD+ R +I+A KA  G T DR  L  A+ KV
Sbjct:   67 EDTEVKPPVALGKAKKLILQDKVDVMMGIVSSGVLGAVRDMVHGAGVPLIVANAGNDEATGINCSPYITRMSFSNGQVNRPMGKWMYEQGIRKVYTLAPDYAAGRQMIGGFTETFTAAGGEIVGQEYTPFQKTQDFGPYLAQAKSSGADAVFVFYAGGEAISFVKQYDSFGLKADLPLYGSGFLTSPLYVNAEGPAAEGVITALHYAPTIDNPENAAFVSAFKEKTGRAPSEFAVHGYDAARALIEATKA--GAT-DRETLANALRKV 331          
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Match: UPI000B5423C1 (ABC transporter substrate-binding protein n=1 Tax=Thioclava sp. F42-5 TaxID=1973005 RepID=UPI000B5423C1)

HSP 1 Score: 241 bits (614), Expect = 2.290e-74
Identity = 117/269 (43.49%), Postives = 174/269 (64.68%), Query Frame = 1
Query:    1 EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLVLSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASDYVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGAVFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGIISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKARNGDTKDRPALVGAIEKVS 807
            EDTE KP V L K +KL+L DKV+V++G+++S V  A+   +   ++PL+++NA  D  TGE C  ++ R S+S+AQ+  P+G W+     K ++ LA DY A H+ + AF   +   GG I G+ Y PF +TQD+GPY+++A+++   AV+  +  GEA+ FVKQYDSFG+KA+ PL+G   LT P+   A+GPAA G+ +A +YV  +++  N  F  A+K K G  P EFAV GYDS R +++AVK+      DR +L  A+ KVS
Sbjct:   67 EDTEAKPPVALGKAKKLILQDKVDVLSGIVSSGVLGAMRDLIDGSKVPLIVANAGNDEATGEACSPWITRLSFSNAQVNRPMGTWLHDQGVKKVYTLAPDYAAGHQMIDAFAASFTEAGGEIVGQQYTPFGKTQDFGPYLAKAQSSGAEAVYVFYAGGEAISFVKQYDSFGLKADLPLYGAGFLTSPLYVNAEGPAAEGVTAALHYVPTIENEANAAFTSAFKAKTGHLPSEFAVQGYDSARALVEAVKS---GASDRASLGAALRKVS 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102420.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FEJ9_9HYPH1.760e-15983.27ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI00186934272.440e-8146.10ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001AD8CFB52.850e-8048.52ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A7S8C4C6_9HYPH4.010e-7745.35ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1H8LGW4_9RHOB9.810e-7747.21Amino acid/amide ABC transporter substrate-binding... [more]
A0A238K6Z9_9RHOB3.600e-7645.72Peripla_BP_6 domain-containing protein n=2 Tax=Rho... [more]
A0A840CDL4_9RHOB6.790e-7646.47Branched-chain amino acid transport system substra... [more]
UPI0003720C2F1.320e-7546.30ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A386TJP7_9RHOB4.060e-7545.90ABC transporter n=2 Tax=Sulfitobacter TaxID=60136 ... [more]
UPI000B5423C12.290e-7443.49ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102420contigH-fluviatilis_contig102420:5..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score250.0
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog1469613.JT55_07785
KEGG koko:K01999
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
EggNOG free text desc.Receptor family ligand binding region
EggNOG OGs1MVV2@1224,2V88T@28211,3FE1Q@34008,COG0683@1,COG0683@2
COG Functional cat.E
Best tax levelRhodovulum
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.989432-CDS-H-fluviatilis_contig102420:4..8111622929063.989432-CDS-H-fluviatilis_contig102420:4..811Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102420 5..811 +
1691135168.6627758-CDS-H-fluviatilis_contig102420:4..8111691135168.6627758-CDS-H-fluviatilis_contig102420:4..811Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102420 5..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102420.542.1prot_H-fluviatilis_contig102420.542.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102420 5..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102420.542.1

>prot_H-fluviatilis_contig102420.542.1 ID=prot_H-fluviatilis_contig102420.542.1|Name=mRNA_H-fluviatilis_contig102420.542.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=269bp
EDTEGKPDVGLNKTRKLVLSDKVEVMAGVINSAVALAVAPYLSSQRIPLV
LSNASTDTLTGEKCDRYLFRASYSSAQITEPIGLWMAKNAPKNIFILASD
YVAPHEYVAAFKKGYLAGGGSIAGEAYPPFNRTQDYGPYISQARAANPGA
VFSVFFAGEALLFVKQYDSFGMKANTPLFGPIGLTPPVLRKAQGPAAAGI
ISASNYVAELDHPENRTFREAYKKKFGEDPEEFAVMGYDSIRFIIDAVKA
RNGDTKDRPALVGAIEKVS
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mRNA from alignment at H-fluviatilis_contig102420:5..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102420.542.1 ID=mRNA_H-fluviatilis_contig102420.542.1|Name=mRNA_H-fluviatilis_contig102420.542.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=807bp|location=Sequence derived from alignment at H-fluviatilis_contig102420:5..811+ (Heribaudiella fluviatilis SAG_13_90)
GAAGACACGGAAGGAAAGCCCGACGTCGGCCTCAACAAGACGCGTAAACT GGTCCTGTCCGATAAGGTCGAGGTGATGGCCGGAGTCATCAATTCCGCCG TCGCTCTCGCCGTCGCGCCCTATCTTTCGAGCCAGCGCATCCCGCTGGTG CTGTCGAACGCCTCGACCGACACACTGACCGGCGAAAAATGCGACCGCTA TCTTTTCCGGGCGTCCTACTCCAGCGCCCAGATCACCGAACCGATCGGCC TGTGGATGGCCAAGAATGCGCCCAAGAACATTTTCATCCTGGCGTCGGAT TATGTCGCGCCGCACGAATATGTGGCGGCCTTCAAGAAGGGTTATCTCGC CGGCGGCGGTTCGATCGCTGGTGAAGCGTATCCGCCGTTCAACCGGACGC AGGATTACGGCCCCTATATTTCGCAGGCGCGCGCCGCCAATCCCGGCGCG GTCTTTTCGGTGTTCTTCGCCGGAGAAGCCCTGCTGTTCGTCAAACAGTA TGATTCCTTCGGCATGAAAGCGAACACACCGCTTTTTGGCCCGATCGGCT TGACACCGCCGGTGCTGCGCAAGGCGCAGGGGCCTGCCGCCGCCGGCATC ATCTCGGCATCGAACTACGTCGCCGAACTCGATCATCCGGAAAACCGCAC CTTCCGCGAGGCCTACAAGAAGAAGTTCGGCGAGGATCCGGAAGAATTCG CGGTGATGGGCTATGATTCGATCCGCTTCATCATCGACGCGGTGAAGGCG CGCAACGGCGACACCAAAGACCGCCCTGCCCTCGTCGGCGCCATCGAGAA GGTATCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102420:5..811+

>mRNA_H-fluviatilis_contig102420.542.1 ID=mRNA_H-fluviatilis_contig102420.542.1|Name=mRNA_H-fluviatilis_contig102420.542.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1614bp|location=Sequence derived from alignment at H-fluviatilis_contig102420:5..811+ (Heribaudiella fluviatilis SAG_13_90)
GAAGACACGGAAGGAAAGCCCGACGTCGGCCTCAACAAGACGCGTAAACT
GGTCCTGTCCGATAAGGTCGAGGTGATGGCCGGAGTCATCAATTCCGCCG
TCGCTCTCGCCGTCGCGCCCTATCTTTCGAGCCAGCGCATCCCGCTGGTG
CTGTCGAACGCCTCGACCGACACACTGACCGGCGAAAAATGCGACCGCTA
TCTTTTCCGGGCGTCCTACTCCAGCGCCCAGATCACCGAACCGATCGGCC
TGTGGATGGCCAAGAATGCGCCCAAGAACATTTTCATCCTGGCGTCGGAT
TATGTCGCGCCGCACGAATATGTGGCGGCCTTCAAGAAGGGTTATCTCGC
CGGCGGCGGTTCGATCGCTGGTGAAGCGTATCCGCCGTTCAACCGGACGC
AGGATTACGGCCCCTATATTTCGCAGGCGCGCGCCGCCAATCCCGGCGCG
GTCTTTTCGGTGTTCTTCGCCGGAGAAGCCCTGCTGTTCGTCAAACAGTA
TGATTCCTTCGGCATGAAAGCGAACACACCGCTTTTTGGCCCGATCGGCT
TGACACCGCCGGTGCTGCGCAAGGCGCAGGGGCCTGCCGCCGCCGGCATC
ATCTCGGCATCGAACTACGTCGCCGAACTCGATCATCCGGAAAACCGCAC
CTTCCGCGAGGCCTACAAGAAGAAGTTCGGCGAGGATCCGGAAGAATTCG
CGGTGATGGGCTATGATTCGATCCGCTTCATCATCGACGCGGTGAAGGCG
CGCAACGGCGACACCAAAGACCGCCCTGCCCTCGTCGGCGCCATCGAGAA
GGTATCCGAAGACACGGAAGGAAAGCCCGACGTCGGCCTCAACAAGACGC
GTAAACTGGTCCTGTCCGATAAGGTCGAGGTGATGGCCGGAGTCATCAAT
TCCGCCGTCGCTCTCGCCGTCGCGCCCTATCTTTCGAGCCAGCGCATCCC
GCTGGTGCTGTCGAACGCCTCGACCGACACACTGACCGGCGAAAAATGCG
ACCGCTATCTTTTCCGGGCGTCCTACTCCAGCGCCCAGATCACCGAACCG
ATCGGCCTGTGGATGGCCAAGAATGCGCCCAAGAACATTTTCATCCTGGC
GTCGGATTATGTCGCGCCGCACGAATATGTGGCGGCCTTCAAGAAGGGTT
ATCTCGCCGGCGGCGGTTCGATCGCTGGTGAAGCGTATCCGCCGTTCAAC
CGGACGCAGGATTACGGCCCCTATATTTCGCAGGCGCGCGCCGCCAATCC
CGGCGCGGTCTTTTCGGTGTTCTTCGCCGGAGAAGCCCTGCTGTTCGTCA
AACAGTATGATTCCTTCGGCATGAAAGCGAACACACCGCTTTTTGGCCCG
ATCGGCTTGACACCGCCGGTGCTGCGCAAGGCGCAGGGGCCTGCCGCCGC
CGGCATCATCTCGGCATCGAACTACGTCGCCGAACTCGATCATCCGGAAA
ACCGCACCTTCCGCGAGGCCTACAAGAAGAAGTTCGGCGAGGATCCGGAA
GAATTCGCGGTGATGGGCTATGATTCGATCCGCTTCATCATCGACGCGGT
GAAGGCGCGCAACGGCGACACCAAAGACCGCCCTGCCCTCGTCGGCGCCA
TCGAGAAGGTATCC
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