mRNA_H-fluviatilis_contig102396.537.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102396.537.1
Unique NamemRNA_H-fluviatilis_contig102396.537.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102396.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102396contigH-fluviatilis_contig102396:199..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size273
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102396.537.1prot_H-fluviatilis_contig102396.537.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102396 199..394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.534123-CDS-H-fluviatilis_contig102396:198..2661622929062.534123-CDS-H-fluviatilis_contig102396:198..266Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102396 199..266 -
1691135168.32029-CDS-H-fluviatilis_contig102396:198..2661691135168.32029-CDS-H-fluviatilis_contig102396:198..266Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102396 199..266 -
1622929062.5488422-CDS-H-fluviatilis_contig102396:297..3941622929062.5488422-CDS-H-fluviatilis_contig102396:297..394Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102396 298..394 -
1691135168.3281512-CDS-H-fluviatilis_contig102396:297..3941691135168.3281512-CDS-H-fluviatilis_contig102396:297..394Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102396 298..394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.5632112-UTR-H-fluviatilis_contig102396:394..5011622929062.5632112-UTR-H-fluviatilis_contig102396:394..501Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102396 395..501 -
1691135168.339235-UTR-H-fluviatilis_contig102396:394..5011691135168.339235-UTR-H-fluviatilis_contig102396:394..501Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102396 395..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102396.537.1

>prot_H-fluviatilis_contig102396.537.1 ID=prot_H-fluviatilis_contig102396.537.1|Name=mRNA_H-fluviatilis_contig102396.537.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=55bp
MAVSRRWSAVPRAGIQFLDGGEWVRRLHSPRLGAIDTSPQPDRVEAQRQV
AHKAA
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mRNA from alignment at H-fluviatilis_contig102396:199..501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102396.537.1 ID=mRNA_H-fluviatilis_contig102396.537.1|Name=mRNA_H-fluviatilis_contig102396.537.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=303bp|location=Sequence derived from alignment at H-fluviatilis_contig102396:199..501- (Heribaudiella fluviatilis SAG_13_90)
GCGGAACAAGGAATTTTTGCAGCCTGCGGTTCGCATCTTTGGAGCAGCTG
ATTTGATTGCCTGAGTCACGTCTGACTCACCCGCTCCACTGTCCTTGGAC
ACTGGACATGGCTGTCTCGCGGCGATGGTCTGCTGTCCCGAGGGCAGGCA
TTCAATTCCTTGATGGTGGGGAATGGGTCAGGAGACTGCACTCGCCTCGT
CTCGGTAGTGTTCTCTCCCTGTGATTACACCTTAGGAGCGATTGATACAT
CCCCGCAGCCGGATCGTGTTGAAGCACAGCGCCAGGTCGCTCACAAGGCT
GCA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102396:199..501-

>mRNA_H-fluviatilis_contig102396.537.1 ID=mRNA_H-fluviatilis_contig102396.537.1|Name=mRNA_H-fluviatilis_contig102396.537.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=330bp|location=Sequence derived from alignment at H-fluviatilis_contig102396:199..501- (Heribaudiella fluviatilis SAG_13_90)
ATGGCTGTCTCGCGGCGATGGTCTGCTGTCCCGAGGGCAGGCATTCAATT
CCTTGATGGTGGGGAATGGGTCAGGAGACTGCACTCGCCTCGTCTCGATG
GCTGTCTCGCGGCGATGGTCTGCTGTCCCGAGGGCAGGCATTCAATTCCT
TGATGGTGGGGAATGGGTCAGGAGACTGCACTCGCCTCGTCTCGGAGCGA
TTGATACATCCCCGCAGCCGGATCGTGTTGAAGCACAGCGCCAGGTCGCT
CACAAGGCTGCAGAGCGATTGATACATCCCCGCAGCCGGATCGTGTTGAA
GCACAGCGCCAGGTCGCTCACAAGGCTGCA
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