mRNA_H-fluviatilis_contig10239.535.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10239.535.1
Unique NamemRNA_H-fluviatilis_contig10239.535.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A6H5JGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.810e-15
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCPGSFL 129
            KG+IYHQFH+DM+E YGR+YN LR++YAEEG + ETDCP +F+
Sbjct:   75 KGKIYHQFHNDMSEDYGRKYNNLRKQYAEEGTMQETDCPENFM 117
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.120e-13
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCPGSFL 129
            KGEIYHQFH+DM+E YGR+YN LR++YAEEG + ET CP  F+
Sbjct:  253 KGEIYHQFHNDMSEDYGRKYNNLRKQYAEEGTMQETGCPEKFM 295
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: D8LN30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN30_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.620e-9
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +G+IYHQFH+DM+E YGR++N LR++YAEEG + E+  P
Sbjct:  130 EGKIYHQFHNDMSEDYGRKHNNLRKQYAEEGTMHESTAP 168
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A7S0Q9J3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0Q9J3_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 4.830e-8
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GE++HQFHDDM+E+YG  YNALR      G LV T CP
Sbjct:  192 QGEVFHQFHDDMSERYGAAYNALRGGAVRRGALVPTGCP 230
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A7S2LKS5_9DINO (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LKS5_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 5.880e-7
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GE+YHQFHDDM E+Y   Y++L+R   + G L E  CP
Sbjct:  177 QGEVYHQFHDDMLERYSERYHSLKRAMQDRGTLKEVGCP 215
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A813EL63_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EL63_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-6
Identity = 18/39 (46.15%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GE+YHQFHDDM ++Y ++Y+ L+      GK+ + DCP
Sbjct:  114 QGEVYHQFHDDMQDRYSQDYHKLKDVLIASGKIAKVDCP 152
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A812T1V2_9DINO (Peptide-methionine (S)-S-oxide reductase n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812T1V2_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 5.520e-6
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GEIYHQFHDDM E+Y +EY+ L++   ++G + +  CP
Sbjct:  258 QGEIYHQFHDDMLERYPQEYHKLKKVLVDQGTVQKVACP 296
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A7S2C1W1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2C1W1_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 6.530e-6
Identity = 18/39 (46.15%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GE+YHQFHDDM E+Y + Y+ L+    + GK+ + +CP
Sbjct:  120 QGEVYHQFHDDMLERYSQGYHQLKGTLLDGGKIKKVECP 158
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A7S1MCM2_ALECA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MCM2_ALECA)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 18/39 (46.15%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GE+YHQFHDDM E+Y + Y+ L+    + GK+ + +CP
Sbjct:  247 QGEVYHQFHDDMLERYSQSYHKLKDVLLDGGKIKKVECP 285
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BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Match: A0A812T594_SYMPI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812T594_SYMPI)

HSP 1 Score: 49.7 bits (117), Expect = 1.040e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCP 117
            +GEIYHQFHDDM E+Y +EY+ L++     G L +  CP
Sbjct:  257 QGEIYHQFHDDMLERYSQEYHQLKKVLYSAGTLQKVACP 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10239.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JGT1_9PHAE2.810e-1567.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMK2_ECTSI2.120e-1367.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LN30_ECTSI6.620e-958.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0Q9J3_9CRYP4.830e-858.97Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2LKS5_9DINO5.880e-751.28Peptide-methionine (S)-S-oxide reductase n=1 Tax=B... [more]
A0A813EL63_POLGL1.110e-646.15Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
A0A812T1V2_9DINO5.520e-648.72Peptide-methionine (S)-S-oxide reductase n=2 Tax=u... [more]
A0A7S2C1W1_9DINO6.530e-646.15Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S1MCM2_ALECA1.020e-546.15Peptide-methionine (S)-S-oxide reductase n=1 Tax=A... [more]
A0A812T594_SYMPI1.040e-551.28Peptide-methionine (S)-S-oxide reductase n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10239contigH-fluviatilis_contig10239:13..144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog2880.D8LMK2
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.3768046-CDS-H-fluviatilis_contig10239:12..1441622929062.3768046-CDS-H-fluviatilis_contig10239:12..144Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10239 13..144 +
1691135168.2643728-CDS-H-fluviatilis_contig10239:12..1441691135168.2643728-CDS-H-fluviatilis_contig10239:12..144Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10239 13..144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10239.535.1prot_H-fluviatilis_contig10239.535.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10239 13..144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10239.535.1

>prot_H-fluviatilis_contig10239.535.1 ID=prot_H-fluviatilis_contig10239.535.1|Name=mRNA_H-fluviatilis_contig10239.535.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=44bp
KGEIYHQFHDDMTEKYGREYNALRRKYAEEGKLVETDCPGSFL*
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mRNA from alignment at H-fluviatilis_contig10239:13..144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10239.535.1 ID=mRNA_H-fluviatilis_contig10239.535.1|Name=mRNA_H-fluviatilis_contig10239.535.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=132bp|location=Sequence derived from alignment at H-fluviatilis_contig10239:13..144+ (Heribaudiella fluviatilis SAG_13_90)
AAAGGCGAGATCTACCACCAGTTCCATGACGATATGACTGAAAAATACGG
CAGAGAGTACAACGCTCTTCGGCGAAAGTACGCTGAGGAAGGAAAGCTGG
TGGAAACCGATTGTCCCGGTAGTTTTTTGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10239:13..144+

>mRNA_H-fluviatilis_contig10239.535.1 ID=mRNA_H-fluviatilis_contig10239.535.1|Name=mRNA_H-fluviatilis_contig10239.535.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=264bp|location=Sequence derived from alignment at H-fluviatilis_contig10239:13..144+ (Heribaudiella fluviatilis SAG_13_90)
AAAGGCGAGATCTACCACCAGTTCCATGACGATATGACTGAAAAATACGG
CAGAGAGTACAACGCTCTTCGGCGAAAGTACGCTGAGGAAGGAAAGCTGG
TGGAAACCGATTGTCCCGGTAGTTTTTTGTGAAAAGGCGAGATCTACCAC
CAGTTCCATGACGATATGACTGAAAAATACGGCAGAGAGTACAACGCTCT
TCGGCGAAAGTACGCTGAGGAAGGAAAGCTGGTGGAAACCGATTGTCCCG
GTAGTTTTTTGTGA
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