mRNA_H-fluviatilis_contig10238.534.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10238.534.1
Unique NamemRNA_H-fluviatilis_contig10238.534.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10238.534.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.690e-14
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 DQPPRDVASMKREIAELQAKTTQSLDRAIATAQAASSVGGHVAEELHEQREQMGRIDADAR 183
            D  PRDVASMK EIAELQA TT SLDRAIA A+A +SVG      L EQREQMG IDA+AR
Sbjct:   33 DSSPRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEAR 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10238.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI4.690e-1470.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10238contigH-fluviatilis_contig10238:6970..8086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size183
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10238.534.1prot_H-fluviatilis_contig10238.534.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10238 6997..8086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.2965894-UTR-H-fluviatilis_contig10238:6969..69961622929062.2965894-UTR-H-fluviatilis_contig10238:6969..6996Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10238 6970..6996 +
1691135168.231137-UTR-H-fluviatilis_contig10238:6969..69961691135168.231137-UTR-H-fluviatilis_contig10238:6969..6996Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10238 6970..6996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.3137457-CDS-H-fluviatilis_contig10238:6996..71251622929062.3137457-CDS-H-fluviatilis_contig10238:6996..7125Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10238 6997..7125 +
1691135168.2387404-CDS-H-fluviatilis_contig10238:6996..71251691135168.2387404-CDS-H-fluviatilis_contig10238:6996..7125Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10238 6997..7125 +
1622929062.3288317-CDS-H-fluviatilis_contig10238:8059..80861622929062.3288317-CDS-H-fluviatilis_contig10238:8059..8086Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10238 8060..8086 +
1691135168.2465281-CDS-H-fluviatilis_contig10238:8059..80861691135168.2465281-CDS-H-fluviatilis_contig10238:8059..8086Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10238 8060..8086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10238.534.1

>prot_H-fluviatilis_contig10238.534.1 ID=prot_H-fluviatilis_contig10238.534.1|Name=mRNA_H-fluviatilis_contig10238.534.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=52bp
MKREIAELQAKTTQSLDRAIATAQAASSVGGHVAEELHEQREQMGRIDAD
AR
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mRNA from alignment at H-fluviatilis_contig10238:6970..8086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10238.534.1 ID=mRNA_H-fluviatilis_contig10238.534.1|Name=mRNA_H-fluviatilis_contig10238.534.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1117bp|location=Sequence derived from alignment at H-fluviatilis_contig10238:6970..8086+ (Heribaudiella fluviatilis SAG_13_90)
GATCAGCCACCGAGGGACGTGGCGTCTATGAAGAGAGAAATCGCGGAGCT
GCAGGCGAAAACAACACAATCGCTGGACCGTGCGATCGCGACGGCGCAAG
CTGCTTCTAGCGTGGGAGGGCACGTCGCGGAGGAGCTGCACGAGCAGAGG
GAACAGGTACGGAAACGCGACGTGAAAAGCAGCCTTCGTGTTGGACAGAA
CGATCAAAACATAATTTGGATTCTGCTGTAAGGCGTGTCGCCGGCTTGTG
GTTAACTTGGTCTAGACGCGGCATCCGGCATGACATATCCGGCGCGTGGG
TGTTGCGCTCGCTTAGGTGGTGTCTTTCTGTACGTTTATTCTCGCCAGGC
TGCTGTCGGTGCCATCTTCTGCCGCCAAGAGATTTATTTTGATTGATCCG
CTCCGGTTTTTTTTCAGGGTTGTACAAATGGATACTTGCCGTGCGCCCGT
TATTTGCAATCTTAATTGATTGTTCACGTGTTTCTCCGCGGTACGGGATG
TGATCTAATTATCGTGACACATATTTGTTTGTTGTCGATGTCTGAGCCCG
TGATGACGTGCGCTCGAGCTCCTTCACGGTCAGCAGGACAAGGAACGAAG
GAAATTGTCAGAGAGTTTGATTCGTTTCAGCGTTGACAGACAGCTGTCCT
TGCCGCCACGTACATCAAAAGGTATCCGTTGCAGATTTTATGGGGACGTC
TATTCCAGAGCAAAAAATTACGTTACACCGAGGCTGAGGATGCCCTTGCG
GCCGATACGTTGCCCGTGTACTGTCACGAGAGATCGGGTGCCGATATGAT
GCACTGCACTCTACCGGACTGTACTGTACTTTAGAATGTACTCGCTGTCC
CCGTCGAGCTGCCACGTATTTTGAGTCATATGCCGCCAAGGAAACTAGTC
TCCTTGTGCCTCCCTACTTCCGTGTTGTGCGTCAACCCTTGCACCTACGC
AAATCTCCGGCACACATCGTACTTACGCCAAACTTCGGACGTCCACCATT
GTTGCTATCGAACTCTAACGTTTCCTCTCTTTCTCTCTCTCTCCCTGTGA
ACTGCAAATCGTCGGTCTCCACTGCCGCTTTCCTAACCAGATGGGTCGCA
TAGATGCCGACGCGAGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10238:6970..8086+

>mRNA_H-fluviatilis_contig10238.534.1 ID=mRNA_H-fluviatilis_contig10238.534.1|Name=mRNA_H-fluviatilis_contig10238.534.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=312bp|location=Sequence derived from alignment at H-fluviatilis_contig10238:6970..8086+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGAGAGAAATCGCGGAGCTGCAGGCGAAAACAACACAATCGCTGGA
CCGTGCGATCGCGACGGCGCAAGCTGCTTCTAGCGTGGGAGGGCACGTCG
CGGAGGAGCTGCACGAGCAGAGGGAACAGATGAAGAGAGAAATCGCGGAG
CTGCAGGCGAAAACAACACAATCGCTGGACCGTGCGATCGCGACGGCGCA
AGCTGCTTCTAGCGTGGGAGGGCACGTCGCGGAGGAGCTGCACGAGCAGA
GGGAACAGATGGGTCGCATAGATGCCGACGCGAGGATGGGTCGCATAGAT
GCCGACGCGAGG
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