mRNA_H-fluviatilis_contig10237.531.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10237.531.1
Unique NamemRNA_H-fluviatilis_contig10237.531.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.160e-50
Identity = 98/234 (41.88%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   19 KRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSREDPTRDFDDKVAIWRVCVITQAQRSTAR-------------------RNK----DDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEEL 651
            KR+R+DF  ++V +    ++   N  H+DESWFYL+ + E+VR+F GE+  G  +V H+ H+PK+M I A +R DP  DFD K+ IWR+CVI  AQRS+ +                   RN+     +EYE D  IDA WY +W  ++ LP +++KMPWL+  R        +    K   E     G   GW  +LVT+PAQSPDLN NDLG FASLK RVW     S++EL
Sbjct:  130 KRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDEL 363          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: B9FLL3_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FLL3_ORYSJ)

HSP 1 Score: 116 bits (290), Expect = 5.590e-24
Identity = 83/272 (30.51%), Postives = 128/272 (47.06%), Query Frame = 1
Query:   73 FVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSR----EDPTRDFDDKVAIWRVCVITQAQRSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGMLLKRVKIDRDVYGAELKLWVD 876
            F+   N  HIDE WF      +   + P E     T VQ+K  I KVMF+ AV+R    ++    FD K+ IW       AQRS+  R +       + +D      +     LP +    P     R  +     ART V    E      G  G + +LV +P  SPD+N  DLG FASL+S        ++EEL   V + +++Y+ +TL R++ +    Y +V+KA GGN +++ H +  + +  G+L K +  D  +Y   ++L VD
Sbjct:  274 FIEMENIIHIDEKWFNATKKDKTYYLHPLEPEPYRT-VQNKNAIEKVMFLSAVARPRFDDEGNCTFDGKIGIWPFVRKEPAQRSSRNRERGTLVTKTIKVDRDTMKSFMISKVLPAIRACWPQEDARRTIFIQQDNARTHVPIDDEQFGVAVGQMGLDIRLVNQPPNSPDMNCLDLGFFASLQSLTSTRVSSNMEELIENVHKEYNDYNPNTLNRVFVTLQSCYIEVMKASGGNKYKIPHMNKERLEALGILPKALCCDHQLYERAIQLLVD 544          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.650e-19
Identity = 70/234 (29.91%), Postives = 109/234 (46.58%), Query Frame = 1
Query:   97 HIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSRED----PTRDFDDKVAIWRVCVITQAQRSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMP--WLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEH 780
            H+DE WF+L  D     +  GEE + S   +HK HIPK+MF+ AV R       ++ FD K+ I+   +   A+RS+  + K         +    Y +      LP +  K P  W  +    Y     AR    +            G N KLVT+PA SPDLN  DLG FA++++  +R+   +++E    V     E  +D L+ +W S  +R + ++   G N  ++EH
Sbjct:  154 HLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRWKTL----YIQQDGARPHCTDGCPELVASAASFGLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEH 382          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: A0A6A3KJZ0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KJZ0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.480e-19
Identity = 75/272 (27.57%), Postives = 130/272 (47.79%), Query Frame = 1
Query:   16 HKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTK-VQHKCHIPKVMFICAVSR---EDPTRD-FDDKVAIWRVCVITQAQRSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGML 816
            ++  R+ F ++ + +    +    NT H+DE+ F++     R  + PGE  V  T+ V+ + +I +VM + AV+R   +  T++ FD+K+ +W       A+RS+ RR        +V++    YH+      LP +E + P            APAR  +K      T+     G + +L  +PA SPDLN  DLGLF ++++R  +    +L+EL   +   + E    T+   + S      Q +K RG N ++  H    K +R+G L
Sbjct:   67 NRNTRLHFCVSHIDRDTLLYADMLNTVHVDENIFHVTETTRRFLLLPGE--VAPTRCVKSRRYITRVMVLAAVARPRVDTVTQNYFDEKLGVWAFMEKAPAKRSSRRRPAGTLETKEVSVTKATYHDMLISRVLPSIEARWPNASGAVVIQQDNAPAR--IKPDDPQFTEAAACCGRHVELRFQPANSPDLNALDLGLFCAIQARQRKTIARTLDELIEAITESYWELPARTINAAFISLQDSMDQCIKQRGDNAYKPRHMKKAKLEREGRL 334          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: UPI001CB9A663 (uncharacterized protein LOC122597563 n=3 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A663)

HSP 1 Score: 99.0 bits (245), Expect = 1.160e-18
Identity = 77/274 (28.10%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   16 HKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSREDPTRD------FDDKVAIWRVCVITQAQRSTARRNKDDEYECDV-NIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGML 816
            +K+ R++F L+ V +S  TF   FN  HIDE WFY+    +R  + P E     T  + K  I KVMF+ AV+R  P  D      F  K+ I+    +  A+RS+  R         + ++       W  E  LP +  K P      P +     A+  +        ++    G++ +L  +P  SPDLN  DLG F +++S   +E   S++EL + VK   +   ++ L  ++ +      +++K RGGN+++  H    K +R+G L
Sbjct:  118 NKKARLEFCLSTVTRSL-TFHDIFNVIHIDEKWFYMSKPSKRYYLVPNEIEPLRT-CKSKKFITKVMFLAAVAR--PRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKWPRDHT-GPIFIQQDNAKPHIDVNDAEFNQEASKDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEVLGSIDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKL 386          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: A0A6A3RHW4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RHW4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.890e-18
Identity = 75/271 (27.68%), Postives = 118/271 (43.54%), Query Frame = 1
Query:   16 HKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSRE--DPTRD--FDDKVAIWRVCVITQAQRSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGML 816
            +K  R+ F+L+ + +    +    +T H+DE  FY+     R  + PGEE     +++ K +I KVMF+ AV R   DP     FD K+ IW       AQRS+ARR        D+++    Y        LP + +  P     RP       A   +    +         G    L  +P  +PDLN NDLGLFAS+++R  ++   + +EL   V   + E    T+   + S        +   G N+++  H    K +R+G L
Sbjct:  141 NKAERLQFSLSHIQRDTMLYDKMLDTVHVDEKLFYITQPTRRFLLLPGEE-APIRRLRSKRYITKVMFLAAVGRPRFDPATQQFFDGKLGIWPFVEHVPAQRSSARRPAGTIITKDISVTKTSYRAMLIAKLLPALCEHWPEDTDGRPIVVQQDNAPAHIASEDQVFADAVAACGRRVVLRNQPPNNPDLNCNDLGLFASIQARQQKKNARTTDELIAAVTESYWELPMRTINATFLSLQGSMDDCIAQDGDNNYKPRHMKKAKLEREGRL 410          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: UPI000B4246FA (uncharacterized protein LOC110435039 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4246FA)

HSP 1 Score: 97.4 bits (241), Expect = 3.090e-18
Identity = 76/265 (28.68%), Postives = 117/265 (44.15%), Query Frame = 1
Query:   73 FVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSREDPTRD------FDDKVAIWRVCVITQAQRSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGMLLKRVKIDRDVY 849
            F+  +N  H+DE WF   S   +  M P EE      V +K  I KVMF+ AV R  P  D      FD K+ +W      QA+R +  R +  E    + +D      +     L  +  + P        Y     A + V    E         G + +L+ +PA S DLN  DLG F SL+S  +     +L++L   V+   + YD DTL R++ +      +V+K  GGN +++ H    + +  GML + +  DR +Y
Sbjct:  119 FMDMYNIIHMDEKWFNTTSKYMKYYMLPEEEDPHRI-VHNKNRIGKVMFLSAVGR--PIYDDAGNCIFDGKLGVWPFVRKEQARRKSRNRGRGAEVTKPIKVDRSTMRSYLISKVLDAIVRRWPREHAGTTIYIQQDNAPSHVPINDEEFATAVKQTGLDIRLINQPANSLDLNVLDLGFFNSLQSLTYDRISRNLDDLIVNVEHEFENYDPDTLNRVFLTLQGCLIEVMKDGGGNRYKIPHIDKDRLESLGMLPRSLGCDRKLY 380          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: UPI001CB94040 (uncharacterized protein LOC122597462 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94040)

HSP 1 Score: 94.4 bits (233), Expect = 1.330e-17
Identity = 76/275 (27.64%), Postives = 129/275 (46.91%), Query Frame = 1
Query:   16 HKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGE-ERVGSTKVQHKCHIPKVMFICAVSREDPTRD------FDDKVAIWRVCVITQAQRSTARRNKDDEYECDV-NIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGML 816
            +K+ R++F L+ V +S  TF   FN  HIDE WFY+    +   + P E E + + K+  K  I KVMF+ AV+R  P  D      F  K+ I+    +  A+R +  R         + ++       W  E  LP +  K P      P +     A+  +        ++    G++ +L  +P  SPDLN  DLG F +++S   +E   S++EL + VK   +   ++ L  ++ +      +++K RGGN+++  H    K +R+G L
Sbjct:   25 NKKARLEFCLSTVTQSL-TFHDMFNVIHIDEKWFYMSKPSKCYYLVPNEIEPLRTCKL--KKFITKVMFLAAVAR--PRFDASGNEVFSGKIGIFPFTTLEPAKRLSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKWPRDHT-GPIFIQQENAKPHIDVNDAEFNQEASKDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLKKQEVLGSIDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKL 293          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: UPI001CB8D7AC (uncharacterized protein LOC122583467 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8D7AC)

HSP 1 Score: 96.7 bits (239), Expect = 1.930e-17
Identity = 77/274 (28.10%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   16 HKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSREDPTRD------FDDKVAIWRVCVITQAQRSTARRNKDDEYECDV-NIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGML 816
            +K+ R++F L+ V +S  TF   FN  HIDE WFY+    +R  + P E     T  + K  I KVMF+ AV+R  P  D      F  K+ I+    +  A+RS+  R         + ++       W  E  LP +  K P      P +     A+  +        ++    G++ +L  +P  SPDLN  DLG F  ++S   +E   S +EL + VK   +   ++ L  ++ +      +++K RGGN+++  H    K +R+G L
Sbjct:  321 NKKARLEFCLSTVTRSL-TFHDMFNVIHIDEKWFYMSKPSKRYYLVPNEIEPLRT-CKSKKFITKVMFLAAVAR--PRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLNEKVLPAIRSKWPRDHT-GPIFIQQDNAKPHIDVNDAEFNEEASKDGFDIRLCFQPPNSPDLNVLDLGFFRVIQSLQEQEVLGSNDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKL 589          
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE)

HSP 1 Score: 95.9 bits (237), Expect = 2.010e-17
Identity = 77/265 (29.06%), Postives = 114/265 (43.02%), Query Frame = 1
Query:   70 TFVSGFNTTHIDESWFYLVSDGERVRMFPGEERVGSTKVQHKCHIPKVMFICAVSR----EDPTRDFDDKVAIWRVCVITQAQRSTARRNKDD-EYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYSSTAPARTRVKERRES*TKQGGGGGWNFKLVTRPAQSPDLNFNDLGLFASLKSRVWRERFDSLEELNTRVKRVHDEYDTDTLERLWQSPPKRYSQVLKARGGNDFEVEHRSIRKRQRKGMLLKRVKIDRDVY 849
            TF   ++  HIDE WF +  +       P E     T  Q K HIPK+MF+ AVSR     D    +D K+ I+      QA+RS+  R     E +   +I+     +   E  LP +++K  W    R        A+  V        +    G WN KL  +P  SPDLN  DLG F S  +   +     LEEL   V +  ++   + L  ++ +      +VLK +GGN+F++ H       R G L   + +   VY
Sbjct:  202 TFHHFYDYIHIDEKWFNITKEKTTFYALPDEPDPYRT-AQSKSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGIFPFTYEAQAKRSSKNRPAGTLEVKATTSINRDEIKKMLLEKLLPAIKEK--WPGPTRDVIIQQDNAKPHVDVNDTDFVQAAQEGNWNIKLQFQPPNSPDLNVLDLGYFRSFDTIQDQAAPRKLEELINAVTKSFEDLTPEKLNNVFLTCQSVMGEVLKHKGGNNFKIPHIGKSSLARLGRLPDNIGVTAQVY 463          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10237.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.160e-5041.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B9FLL3_ORYSJ5.590e-2430.51Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A6G0X8U9_9STRA1.650e-1929.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3KJZ0_9STRA2.480e-1927.57Uncharacterized protein n=4 Tax=Phytophthora rubi ... [more]
UPI001CB9A6631.160e-1828.10uncharacterized protein LOC122597563 n=3 Tax=Erige... [more]
A0A6A3RHW4_9STRA1.890e-1827.68Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
UPI000B4246FA3.090e-1828.68uncharacterized protein LOC110435039 n=1 Tax=Sorgh... [more]
UPI001CB940401.330e-1727.64uncharacterized protein LOC122597462 n=1 Tax=Erige... [more]
UPI001CB8D7AC1.930e-1728.10uncharacterized protein LOC122583467 n=1 Tax=Erige... [more]
A0A484N8H9_9ASTE2.010e-1729.06Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10237contigH-fluviatilis_contig10237:116..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog67593.Physo109421
EggNOG OGs2CTB4@1,2RFQE@2759,3QH57@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1602
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10237.531.1prot_H-fluviatilis_contig10237.531.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10237 122..619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.0787756-UTR-H-fluviatilis_contig10237:115..1211622929062.0787756-UTR-H-fluviatilis_contig10237:115..121Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10237 116..121 +
1691135168.1389906-UTR-H-fluviatilis_contig10237:115..1211691135168.1389906-UTR-H-fluviatilis_contig10237:115..121Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10237 116..121 +
1622929062.103257-UTR-H-fluviatilis_contig10237:619..17171622929062.103257-UTR-H-fluviatilis_contig10237:619..1717Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10237 620..1717 +
1691135168.1571808-UTR-H-fluviatilis_contig10237:619..17171691135168.1571808-UTR-H-fluviatilis_contig10237:619..1717Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10237 620..1717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.0928376-CDS-H-fluviatilis_contig10237:121..6191622929062.0928376-CDS-H-fluviatilis_contig10237:121..619Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10237 122..619 +
1691135168.1486404-CDS-H-fluviatilis_contig10237:121..6191691135168.1486404-CDS-H-fluviatilis_contig10237:121..619Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10237 122..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10237.531.1

>prot_H-fluviatilis_contig10237.531.1 ID=prot_H-fluviatilis_contig10237.531.1|Name=mRNA_H-fluviatilis_contig10237.531.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=166bp
MMKHKRNRVDFTLNQVAKSRKTFVSGFNTTHIDESWFYLVSDGERVRMFP
GEERVGSTKVQHKCHIPKVMFICAVSREDPTRDFDDKVAIWRVCVITQAQ
RSTARRNKDDEYECDVNIDAGWYHEWCTEIFLPEVEDKMPWLKVPRPSYS
STAPARTRVKERRES*
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mRNA from alignment at H-fluviatilis_contig10237:116..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10237.531.1 ID=mRNA_H-fluviatilis_contig10237.531.1|Name=mRNA_H-fluviatilis_contig10237.531.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1602bp|location=Sequence derived from alignment at H-fluviatilis_contig10237:116..1717+ (Heribaudiella fluviatilis SAG_13_90)
AAGGTGATGATGAAGCACAAGCGGAACCGAGTGGACTTCACCCTGAATCA AGTCGCCAAGAGCCGCAAGACGTTCGTCAGCGGTTTCAACACGACTCATA TCGACGAGTCGTGGTTCTATCTCGTCAGCGATGGGGAGAGGGTCCGCATG TTTCCCGGTGAAGAGCGGGTGGGCTCCACCAAGGTGCAACACAAGTGCCA CATCCCCAAGGTGATGTTCATCTGCGCGGTTTCGCGCGAAGACCCCACCC GCGACTTCGACGACAAGGTCGCGATATGGCGTGTTTGCGTCATCACGCAG GCACAACGGAGCACGGCCCGCCGCAACAAGGACGACGAGTACGAGTGCGA CGTTAACATCGATGCCGGGTGGTACCACGAGTGGTGCACGGAGATTTTTC TTCCCGAGGTCGAGGACAAGATGCCGTGGTTGAAGGTACCGAGGCCATCG TACAGCAGCACGGCGCCAGCCCGCACACGGGTAAAGGAACGCCGCGAAAG CTGAACAAAGCAGGGAGGGGGGGGGGGGTGGAACTTCAAGCTCGTGACGC GGCCGGCGCAATCGCCCGACCTCAACTTCAACGATTTGGGGCTATTCGCG TCCCTTAAGAGTAGAGTTTGGAGGGAGCGCTTCGATTCGCTAGAAGAGCT TAACACGAGGGTAAAGAGGGTGCATGACGAGTATGATACGGATACGCTAG AGAGACTGTGGCAGAGCCCCCCTAAGAGGTATAGTCAGGTGCTGAAAGCG CGAGGGGGAAACGATTTCGAGGTAGAGCATCGTAGCATTAGGAAAAGGCA GCGTAAGGGTATGCTGCTGAAGCGCGTCAAAATTGACAGAGACGTTTACG GTGCGGAGTTGAAGTTATGGGTTGACACGGAGGATGAGAGCGACGAAGAA TGAATTTAAATGCAAAAAAACACAAGGAATCCAACGCAACAATCCGTTTC GTGATTGGAGGTCATCTCGCGATGCTGCACCCATGACGATACAGACTTAT GAGACAGAGGGTGTATATCCCATACACAGATCCGTGCATTTCATCTACGG TAGCCTCTGGTGACGTAGAGTGAGCGCAGGCCATTGGGTGCTCATGATAC GCATACCTGCGTTCGTCGTCGCCGAAAGATTGAGGGAGAAGCTGCAAGAC TCTCACCCTTGCAGGAATGAATTGCTCGATCCTAGACTCTACTTGTGTGT AGAGTATTTCCGATCCGCAGTGTCCCGAAGCCGTTTTGATGTGTCCGGGA TTGAAAACTCTGCAATCACACAAGTACACTTACGCGGAGTCTAGAGCACT TACGGGGTACTGTTCTGTGTTATCACCGTTACTAGCCCACAGAACCAGTT GCAGACATAGCATTTCAACAAGCAAGAATGCATCGGTGGAGAAATCAAAT TTCTTGCGGACGTCTGTAAACATTCGAACTATTCCCGCCTTCCGCAAGCT TCCTGCCGTGGAAAGCCATGAATTGGTGGCTGCCGGTTCTAGGGTGCTGT GCATACGGCCGGACTCTCGCCATGTGGACGATATTTATTTGGATGACAAG AGTTCGATCGCGTCATTTTTTCTGCATCCCCCCTGCCCCCCCCATTGCTC CG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10237:116..1717+

>mRNA_H-fluviatilis_contig10237.531.1 ID=mRNA_H-fluviatilis_contig10237.531.1|Name=mRNA_H-fluviatilis_contig10237.531.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=996bp|location=Sequence derived from alignment at H-fluviatilis_contig10237:116..1717+ (Heribaudiella fluviatilis SAG_13_90)
ATGATGAAGCACAAGCGGAACCGAGTGGACTTCACCCTGAATCAAGTCGC
CAAGAGCCGCAAGACGTTCGTCAGCGGTTTCAACACGACTCATATCGACG
AGTCGTGGTTCTATCTCGTCAGCGATGGGGAGAGGGTCCGCATGTTTCCC
GGTGAAGAGCGGGTGGGCTCCACCAAGGTGCAACACAAGTGCCACATCCC
CAAGGTGATGTTCATCTGCGCGGTTTCGCGCGAAGACCCCACCCGCGACT
TCGACGACAAGGTCGCGATATGGCGTGTTTGCGTCATCACGCAGGCACAA
CGGAGCACGGCCCGCCGCAACAAGGACGACGAGTACGAGTGCGACGTTAA
CATCGATGCCGGGTGGTACCACGAGTGGTGCACGGAGATTTTTCTTCCCG
AGGTCGAGGACAAGATGCCGTGGTTGAAGGTACCGAGGCCATCGTACAGC
AGCACGGCGCCAGCCCGCACACGGGTAAAGGAACGCCGCGAAAGCTGAAT
GATGAAGCACAAGCGGAACCGAGTGGACTTCACCCTGAATCAAGTCGCCA
AGAGCCGCAAGACGTTCGTCAGCGGTTTCAACACGACTCATATCGACGAG
TCGTGGTTCTATCTCGTCAGCGATGGGGAGAGGGTCCGCATGTTTCCCGG
TGAAGAGCGGGTGGGCTCCACCAAGGTGCAACACAAGTGCCACATCCCCA
AGGTGATGTTCATCTGCGCGGTTTCGCGCGAAGACCCCACCCGCGACTTC
GACGACAAGGTCGCGATATGGCGTGTTTGCGTCATCACGCAGGCACAACG
GAGCACGGCCCGCCGCAACAAGGACGACGAGTACGAGTGCGACGTTAACA
TCGATGCCGGGTGGTACCACGAGTGGTGCACGGAGATTTTTCTTCCCGAG
GTCGAGGACAAGATGCCGTGGTTGAAGGTACCGAGGCCATCGTACAGCAG
CACGGCGCCAGCCCGCACACGGGTAAAGGAACGCCGCGAAAGCTGA
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