mRNA_H-fluviatilis_contig102359.528.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102359.528.1
Unique NamemRNA_H-fluviatilis_contig102359.528.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A7S4S219_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S219_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYN 144
            G+LA +     A+LLR + GL+RSGLFGYN VLVGLA+ATFD   E++
Sbjct:  202 GVLAVIAGNLLAILLRFDTGLIRSGLFGYNSVLVGLALATFDSSEEHS 249
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A444UUD9_ACIRT (Urea transporter 2 (Fragment) n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UUD9_ACIRT)

HSP 1 Score: 56.2 bits (134), Expect = 2.830e-8
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            GL+ TM +T  A++LR  RG + +GL+GYNG+LVGL +A F   G++ ++++
Sbjct:   45 GLVGTMFATISALILRQNRGAIAAGLYGYNGILVGLLMAVFSEKGDWYWWLL 96
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A7L1XKD7_9AVES (UT2 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L1XKD7_9AVES)

HSP 1 Score: 57.4 bits (137), Expect = 3.320e-8
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  + +GL+GYNGVLVGL IA F   G+Y+++++
Sbjct:  564 GCLGTVVSTLTALILGQDRSAIAAGLYGYNGVLVGLLIAVFSAKGDYHWWLL 615
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A7K9XE06_9GRUI (UT2 protein (Fragment) n=1 Tax=Psophia crepitans TaxID=54359 RepID=A0A7K9XE06_9GRUI)

HSP 1 Score: 57.4 bits (137), Expect = 3.320e-8
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  + +GL+GYNGVLVGL IA F   G+Y+++++
Sbjct:  569 GCLGTVVSTLTALILSQDRSAIAAGLYGYNGVLVGLLIAIFSAKGDYHWWLL 620
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A8K1G2T0_9PASS (Uncharacterized protein n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1G2T0_9PASS)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G +AT+VST  A++L  +R  + +GL+GYNGVLVGL +A F   G+YN++++
Sbjct:  468 GCVATVVSTLTALILGQDRSAIAAGLYGYNGVLVGLLMAVFSVDGDYNWWLL 519
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A8C3NXX6_9PASS (Urea transporter n=2 Tax=Sylvioidea TaxID=2116661 RepID=A0A8C3NXX6_9PASS)

HSP 1 Score: 57.0 bits (136), Expect = 4.280e-8
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G +AT+VST  A++L  +R  + +GL+GYNG+LVGL +A F   G+YN++++
Sbjct:   95 GCVATVVSTLTALILGQDRSAIAAGLYGYNGILVGLLMAVFSVDGDYNWWLL 146
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A7K5HXE2_CROSL (UT2 protein (Fragment) n=1 Tax=Crotophaga sulcirostris TaxID=33598 RepID=A0A7K5HXE2_CROSL)

HSP 1 Score: 57.0 bits (136), Expect = 4.540e-8
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  +++GL+GYNGVLVGL +A F   G+Y+++++
Sbjct:  546 GCLGTVVSTLTALILGQDRSAIKAGLYGYNGVLVGLLMAVFSANGDYHWWLL 597
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A850XV72_PIACA (UT2 protein (Fragment) n=2 Tax=Cuculiformes TaxID=8940 RepID=A0A850XV72_PIACA)

HSP 1 Score: 57.0 bits (136), Expect = 4.540e-8
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  V +GL+GYNGVLVGL +A F   G+Y+++++
Sbjct:  571 GCLGTVVSTLTALILGQDRSAVEAGLYGYNGVLVGLLMAAFSAKGDYHWWLL 622
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: G1NAH2_MELGA (Uncharacterized protein n=2 Tax=Phasianidae TaxID=9005 RepID=G1NAH2_MELGA)

HSP 1 Score: 56.2 bits (134), Expect = 5.170e-8
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  +  GL+GYNGVLVGL IA F   G+Y+++++
Sbjct:   49 GCLGTVVSTLTALILGQDRSAIAVGLYGYNGVLVGLLIAVFSAKGDYHWWLL 100
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BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Match: A0A7K6N3L1_PEDTO (UT2 protein (Fragment) n=8 Tax=Neognathae TaxID=8825 RepID=A0A7K6N3L1_PEDTO)

HSP 1 Score: 56.6 bits (135), Expect = 5.930e-8
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 GLLATMVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYII 156
            G L T+VST  A++L  +R  V +GL+GYNGVLVGL +A F   G+Y+++++
Sbjct:   48 GCLGTVVSTLTALILGQDRSAVAAGLYGYNGVLVGLLMAVFSAKGDYHWWLL 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102359.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4S219_9STRA6.910e-958.33Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A444UUD9_ACIRT2.830e-844.23Urea transporter 2 (Fragment) n=1 Tax=Acipenser ru... [more]
A0A7L1XKD7_9AVES3.320e-848.08UT2 protein (Fragment) n=2 Tax=Neognathae TaxID=88... [more]
A0A7K9XE06_9GRUI3.320e-848.08UT2 protein (Fragment) n=1 Tax=Psophia crepitans T... [more]
A0A8K1G2T0_9PASS3.330e-848.08Uncharacterized protein n=1 Tax=Zosterops borbonic... [more]
A0A8C3NXX6_9PASS4.280e-846.15Urea transporter n=2 Tax=Sylvioidea TaxID=2116661 ... [more]
A0A7K5HXE2_CROSL4.540e-846.15UT2 protein (Fragment) n=1 Tax=Crotophaga sulciros... [more]
A0A850XV72_PIACA4.540e-848.08UT2 protein (Fragment) n=2 Tax=Cuculiformes TaxID=... [more]
G1NAH2_MELGA5.170e-848.08Uncharacterized protein n=2 Tax=Phasianidae TaxID=... [more]
A0A7K6N3L1_PEDTO5.930e-848.08UT2 protein (Fragment) n=8 Tax=Neognathae TaxID=88... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102359contigH-fluviatilis_contig102359:202..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102359.528.1prot_H-fluviatilis_contig102359.528.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102359 217..674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.4123242-UTR-H-fluviatilis_contig102359:201..2161622929061.4123242-UTR-H-fluviatilis_contig102359:201..216Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102359 202..216 +
1691135167.829239-UTR-H-fluviatilis_contig102359:201..2161691135167.829239-UTR-H-fluviatilis_contig102359:201..216Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102359 202..216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.4254131-CDS-H-fluviatilis_contig102359:216..2491622929061.4254131-CDS-H-fluviatilis_contig102359:216..249Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102359 217..249 +
1691135167.8406835-CDS-H-fluviatilis_contig102359:216..2491691135167.8406835-CDS-H-fluviatilis_contig102359:216..249Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102359 217..249 +
1622929061.437573-CDS-H-fluviatilis_contig102359:557..6741622929061.437573-CDS-H-fluviatilis_contig102359:557..674Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102359 558..674 +
1691135167.8602421-CDS-H-fluviatilis_contig102359:557..6741691135167.8602421-CDS-H-fluviatilis_contig102359:557..674Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102359 558..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102359.528.1

>prot_H-fluviatilis_contig102359.528.1 ID=prot_H-fluviatilis_contig102359.528.1|Name=mRNA_H-fluviatilis_contig102359.528.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=50bp
MVSTAFAMLLRMERGLVRSGLFGYNGVLVGLAIATFDPMGEYNYYIIGN*
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mRNA from alignment at H-fluviatilis_contig102359:202..674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102359.528.1 ID=mRNA_H-fluviatilis_contig102359.528.1|Name=mRNA_H-fluviatilis_contig102359.528.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=473bp|location=Sequence derived from alignment at H-fluviatilis_contig102359:202..674+ (Heribaudiella fluviatilis SAG_13_90)
GGCCTGTTGGCCACGATGGTGTCTACCGCGTTTGCCATGCTGTTGCGGGT
GAGCAGTGCAGAGGGGTTAGTCCCGCTTATGGGAGAGCGAGAGAGGAAAG
AAGGCGTGTGGTTGGTGCTCTGAGCTCTGTGATGGGGATTGAATTTTCTA
TGCGAACTGGTGCTCTGTTGGTTATTACTAGTGTCATGATTGTGCAAAAT
GGCTTAACATCCAAATGTTTTTCAAATCCAATCCAAATGCAATCCAAATG
AACCATCATATTCCACACCAAATGCCAGCATCTTACCTCCTGCCATTCCA
ATGCGCCATTCCACATCACCCAATGCCCAATTCCCATGCCAATGCCAATG
CCACAGATGGAACGCGGCCTGGTGCGGTCGGGGCTGTTTGGGTACAATGG
CGTGCTGGTGGGGCTGGCCATTGCCACCTTTGACCCGATGGGCGAGTACA
ACTACTACATCATTGGTAATTAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102359:202..674+

>mRNA_H-fluviatilis_contig102359.528.1 ID=mRNA_H-fluviatilis_contig102359.528.1|Name=mRNA_H-fluviatilis_contig102359.528.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=300bp|location=Sequence derived from alignment at H-fluviatilis_contig102359:202..674+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTGTCTACCGCGTTTGCCATGCTGTTGCGGATGGTGTCTACCGCGTT
TGCCATGCTGTTGCGGATGGAACGCGGCCTGGTGCGGTCGGGGCTGTTTG
GGTACAATGGCGTGCTGGTGGGGCTGGCCATTGCCACCTTTGACCCGATG
GGCGAGTACAACTACTACATCATTGGTAATTAAATGGAACGCGGCCTGGT
GCGGTCGGGGCTGTTTGGGTACAATGGCGTGCTGGTGGGGCTGGCCATTG
CCACCTTTGACCCGATGGGCGAGTACAACTACTACATCATTGGTAATTAA
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