mRNA_H-fluviatilis_contig102328.526.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102328.526.1
Unique NamemRNA_H-fluviatilis_contig102328.526.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102328.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102328contigH-fluviatilis_contig102328:336..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size303
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102328.526.1prot_H-fluviatilis_contig102328.526.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102328 336..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.1399677-CDS-H-fluviatilis_contig102328:335..4821622929061.1399677-CDS-H-fluviatilis_contig102328:335..482Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 336..482 +
1691135167.737457-CDS-H-fluviatilis_contig102328:335..4821691135167.737457-CDS-H-fluviatilis_contig102328:335..482Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 336..482 +
1622929061.1694136-CDS-H-fluviatilis_contig102328:514..6041622929061.1694136-CDS-H-fluviatilis_contig102328:514..604Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 515..604 +
1691135167.7487307-CDS-H-fluviatilis_contig102328:514..6041691135167.7487307-CDS-H-fluviatilis_contig102328:514..604Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 515..604 +
1622929061.1895702-CDS-H-fluviatilis_contig102328:632..6981622929061.1895702-CDS-H-fluviatilis_contig102328:632..698Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 633..698 +
1691135167.7560768-CDS-H-fluviatilis_contig102328:632..6981691135167.7560768-CDS-H-fluviatilis_contig102328:632..698Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102328 633..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102328.526.1

>prot_H-fluviatilis_contig102328.526.1 ID=prot_H-fluviatilis_contig102328.526.1|Name=mRNA_H-fluviatilis_contig102328.526.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=101bp
RVFARCVLTVLCFSAEFQRLPREHMARVYECQVFLRGEQFQHVEYVNSTN
TVQDVKTLVRDKTGIPIERLRLTLLPLHKAMARDDLTLGDYGVQSMAHIQ
*
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mRNA from alignment at H-fluviatilis_contig102328:336..698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102328.526.1 ID=mRNA_H-fluviatilis_contig102328.526.1|Name=mRNA_H-fluviatilis_contig102328.526.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=363bp|location=Sequence derived from alignment at H-fluviatilis_contig102328:336..698+ (Heribaudiella fluviatilis SAG_13_90)
CGTGTCTTCGCTCGTTGTGTTCTCACTGTTCTCTGCTTTTCCGCAGAGTT
CCAGAGGTTACCTCGAGAACACATGGCCAGGGTCTATGAATGTCAAGTGT
TCCTACGTGGAGAACAGTTTCAGCATGTGGAATACGTGAACTCAACGGTT
TCGTCACGTTTTCACTTCAAATCCTGCAGAATACGGTGCAGGACGTGAAA
ACATTGGTGAGAGATAAAACGGGCATTCCGATCGAGCGTTTGCGATTGAC
TTTGTTGCCATTACACAAGGTACCAGTGTCCGCTTCCTCATCCGCAGGCG
ATGGCTCGAGATGATTTGACCTTAGGGGACTATGGGGTACAAAGTATGGC
CCACATTCAGTAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102328:336..698+

>mRNA_H-fluviatilis_contig102328.526.1 ID=mRNA_H-fluviatilis_contig102328.526.1|Name=mRNA_H-fluviatilis_contig102328.526.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig102328:336..698+ (Heribaudiella fluviatilis SAG_13_90)
CGTGTCTTCGCTCGTTGTGTTCTCACTGTTCTCTGCTTTTCCGCAGAGTT
CCAGAGGTTACCTCGAGAACACATGGCCAGGGTCTATGAATGTCAAGTGT
TCCTACGTGGAGAACAGTTTCAGCATGTGGAATACGTGAACTCAACGCGT
GTCTTCGCTCGTTGTGTTCTCACTGTTCTCTGCTTTTCCGCAGAGTTCCA
GAGGTTACCTCGAGAACACATGGCCAGGGTCTATGAATGTCAAGTGTTCC
TACGTGGAGAACAGTTTCAGCATGTGGAATACGTGAACTCAACGAATACG
GTGCAGGACGTGAAAACATTGGTGAGAGATAAAACGGGCATTCCGATCGA
GCGTTTGCGATTGACTTTGTTGCCATTACACAAGAATACGGTGCAGGACG
TGAAAACATTGGTGAGAGATAAAACGGGCATTCCGATCGAGCGTTTGCGA
TTGACTTTGTTGCCATTACACAAGGCGATGGCTCGAGATGATTTGACCTT
AGGGGACTATGGGGTACAAAGTATGGCCCACATTCAGTAAGCGATGGCTC
GAGATGATTTGACCTTAGGGGACTATGGGGTACAAAGTATGGCCCACATT
CAGTAA
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