mRNA_H-fluviatilis_contig102310.524.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102310.524.1
Unique NamemRNA_H-fluviatilis_contig102310.524.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: A0A5A8ECF7_CAFRO (Uncharacterized protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8ECF7_CAFRO)

HSP 1 Score: 106 bits (264), Expect = 5.530e-25
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL  EF+ +NA L SATLGR+WL+QMG  A+A ++TIQYCM + RH++QSVE+PAVT +R+SDDY+    DQW+IG
Sbjct:  422 QDWLHNEFEELNATLTSATLGREWLLQMGRGAEAAEITIQYCMPYPRHVLQSVEVPAVTQSRASDDYNPQ-NDQWSIG 498          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: R7TBZ0_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TBZ0_CAPTE)

HSP 1 Score: 102 bits (254), Expect = 1.240e-23
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDW++ +FDNMNA   +  + R WL+QMG+ A    LT+QYCMS CRHI+QS+EIP VT AR+SDDY  +   QW IG
Sbjct:  484 QDWMNDQFDNMNATTNNVHVARDWLIQMGLGAQRNGLTVQYCMSECRHILQSLEIPVVTQARASDDYQPNSGTQWQIG 561          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: F2UQ23_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UQ23_SALR5)

HSP 1 Score: 97.4 bits (241), Expect = 7.110e-22
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL+ E+DN+  +  SATL RQWL+QMG AA+   +TIQYCM++ RH+MQSVEI AVT+AR+S DY     DQW++G
Sbjct:  442 QDWLNDEYDNVAVLTSSATLARQWLLQMGRAAEEVGVTIQYCMAYVRHLMQSVEINAVTNARASRDYQPG-NDQWDLG 518          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: A0A8J1UW66_OWEFU (Ofus.G201288 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UW66_OWEFU)

HSP 1 Score: 96.7 bits (239), Expect = 1.320e-21
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWLDVEF  +NA L    LGR WL QMG AA    LTIQYCMS+ RHI+QS+EIP VT AR SDDY    + QW IG
Sbjct:  391 QDWLDVEFGGLNATLTDINLGRTWLHQMGKAAQENGLTIQYCMSNPRHILQSLEIPVVTQARVSDDYHPGNS-QWKIG 467          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: V4ANV5_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ANV5_LOTGI)

HSP 1 Score: 94.4 bits (233), Expect = 8.560e-21
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWLD EF  + A+L    LGR WLMQMG AA    +TIQYCMS+ RHIMQSVEIP VT AR+S DY     D W IG
Sbjct:  411 QDWLDNEFAGVKALLTQIDLGRTWLMQMGRAAQENGITIQYCMSNPRHIMQSVEIPVVTQARASGDYRAGK-DNWKIG 487          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: UPI001EE6219F (uncharacterized protein LOC124257216 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6219F)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-20
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL+VEF+ MN  L   +LGR WLMQMG  A   D+TIQYCMS+ RH MQS+EIP VT AR S DY     D W IG
Sbjct:  324 QDWLNVEFNEMNITLSDVSLGRTWLMQMGRGARNHDITIQYCMSNPRHAMQSLEIPVVTQARVSGDYRAGA-DNWKIG 400          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: A0A2T7PII7_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PII7_POMCA)

HSP 1 Score: 92.4 bits (228), Expect = 1.410e-20
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWLD EF  ++A L S  + R WLMQMG AA A DLTIQYCMS+ RH +Q++EIP VT AR S+DY     DQW IG
Sbjct:    5 QDWLDREFTGVHAALTSVDVARTWLMQMGEAARAVDLTIQYCMSYPRHALQTLEIPVVTQARVSEDYRAG-GDQWIIG 81          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: UPI00201F1916 (uncharacterized protein LOC124148977 isoform X2 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F1916)

HSP 1 Score: 92.8 bits (229), Expect = 2.910e-20
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL+VEF+ MN  L   ++GR WLMQMG  A   D+TIQYCMS+ RH MQS+EIP VT AR S DY     D W IG
Sbjct:  418 QDWLNVEFNEMNITLSDVSVGRTWLMQMGKGARKHDVTIQYCMSNPRHAMQSLEIPVVTQARVSGDYRAGA-DNWKIG 494          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: UPI001EB00D84 (uncharacterized protein LOC124148977 isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB00D84)

HSP 1 Score: 92.8 bits (229), Expect = 2.980e-20
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL+VEF+ MN  L   ++GR WLMQMG  A   D+TIQYCMS+ RH MQS+EIP VT AR S DY     D W IG
Sbjct:  418 QDWLNVEFNEMNITLSDVSVGRTWLMQMGKGARKHDVTIQYCMSNPRHAMQSLEIPVVTQARVSGDYRAGA-DNWKIG 494          
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Match: A0A2T7PIM0_POMCA (Uncharacterized protein n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PIM0_POMCA)

HSP 1 Score: 91.7 bits (226), Expect = 7.560e-20
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 QDWLDVEFDNMNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTHARSSDDYSEDLTDQWNIG 234
            QDWL+ EF  +NA L S  + R WLMQMG AA A DLTIQYC+S+ RH +Q++EIP VT AR S DY    +DQW IG
Sbjct:  382 QDWLNREFAGLNATLTSVDVARTWLMQMGEAARAVDLTIQYCLSYPRHALQTLEIPVVTQARVSGDYRAG-SDQWMIG 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102310.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ECF7_CAFRO5.530e-2561.54Uncharacterized protein n=5 Tax=Sar TaxID=2698737 ... [more]
R7TBZ0_CAPTE1.240e-2356.41Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
F2UQ23_SALR57.110e-2258.97Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8J1UW66_OWEFU1.320e-2162.82Ofus.G201288 protein n=1 Tax=Owenia fusiformis Tax... [more]
V4ANV5_LOTGI8.560e-2161.54Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
UPI001EE6219F1.070e-2060.26uncharacterized protein LOC124257216 n=1 Tax=Halio... [more]
A0A2T7PII7_POMCA1.410e-2060.26Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
UPI00201F19162.910e-2058.97uncharacterized protein LOC124148977 isoform X2 n=... [more]
UPI001EB00D842.980e-2058.97uncharacterized protein LOC124148977 isoform X1 n=... [more]
A0A2T7PIM0_POMCA7.560e-2058.97Uncharacterized protein n=4 Tax=Pomacea canalicula... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102310contigH-fluviatilis_contig102310:84..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score81.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog946362.XP_004988641.1
EggNOG OGs2CMQK@1,2QRFD@2759,39S3T@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size234
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102310.524.1prot_H-fluviatilis_contig102310.524.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102310 114..754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.882203-UTR-H-fluviatilis_contig102310:83..1131622929060.882203-UTR-H-fluviatilis_contig102310:83..113Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102310 84..113 +
1691135167.6502056-UTR-H-fluviatilis_contig102310:83..1131691135167.6502056-UTR-H-fluviatilis_contig102310:83..113Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102310 84..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.9022305-CDS-H-fluviatilis_contig102310:113..1541622929060.9022305-CDS-H-fluviatilis_contig102310:113..154Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 114..154 +
1691135167.6604278-CDS-H-fluviatilis_contig102310:113..1541691135167.6604278-CDS-H-fluviatilis_contig102310:113..154Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 114..154 +
1622929060.9193697-CDS-H-fluviatilis_contig102310:449..5341622929060.9193697-CDS-H-fluviatilis_contig102310:449..534Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 450..534 +
1691135167.668837-CDS-H-fluviatilis_contig102310:449..5341691135167.668837-CDS-H-fluviatilis_contig102310:449..534Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 450..534 +
1622929060.9356174-CDS-H-fluviatilis_contig102310:676..7541622929060.9356174-CDS-H-fluviatilis_contig102310:676..754Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 677..754 +
1691135167.67708-CDS-H-fluviatilis_contig102310:676..7541691135167.67708-CDS-H-fluviatilis_contig102310:676..754Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102310 677..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102310.524.1

>prot_H-fluviatilis_contig102310.524.1 ID=prot_H-fluviatilis_contig102310.524.1|Name=mRNA_H-fluviatilis_contig102310.524.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=68bp
MNAILESATLGRQWLMQMGIAADATDLTIQYCMSHCRHIMQSVEIPAVTH
ARSSDDYSEDLTDQWNIG
back to top

mRNA from alignment at H-fluviatilis_contig102310:84..754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102310.524.1 ID=mRNA_H-fluviatilis_contig102310.524.1|Name=mRNA_H-fluviatilis_contig102310.524.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=671bp|location=Sequence derived from alignment at H-fluviatilis_contig102310:84..754+ (Heribaudiella fluviatilis SAG_13_90)
CAGGATTGGTTGGATGTGGAGTTTGACAATATGAATGCCATTCTCGAAAG CGCCACGCTCGGCCGCCAATGGTGTGGTGCAGTGCAGTGCAGTGCAGTGC AGTGCAGTGCAGTGCAGTGCAGTGCAGTGCAGTGCAGTGCAGTGCAGTGC AGTGCAGTGCAGTACAGTGCAGTGCAGTACAGTGCAGTACAGTGCAGTAC AGTGCAGTACAGTGCAGTACAGTGCATGCGCTATGTAACAAGCGCGCTAT TTCGCACGCATTATCCTGTCTGCCGCGTCCCTCCTCACTGTGCGGCGGAT TGATCAACACACCGCTCACGTCTGAGCATACCGAGTCACATATCACATCT GATCGCATGCGTACAGGTTGATGCAGATGGGTATTGCGGCGGATGCGACC GATCTCACCATTCAGTACTGCATGTCTCACTGCCGCCACATCATGCAATC CGTACGTACGCTCCGACCACACACTACACCACATGGCACCACACCACACC ACATCATATGGCACAACACCACATGGCACACCGGCACATGCAAACTGTAG TAGATGTAGAATCAGATATGATGTAGTACGCACCGTCACACAGGTGGAGA TTCCGGCTGTGACGCACGCGCGCAGTTCGGACGATTACAGCGAGGACCTC ACTGACCAGTGGAACATCGGC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig102310:84..754+

>mRNA_H-fluviatilis_contig102310.524.1 ID=mRNA_H-fluviatilis_contig102310.524.1|Name=mRNA_H-fluviatilis_contig102310.524.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=408bp|location=Sequence derived from alignment at H-fluviatilis_contig102310:84..754+ (Heribaudiella fluviatilis SAG_13_90)
ATGAATGCCATTCTCGAAAGCGCCACGCTCGGCCGCCAATGATGAATGCC
ATTCTCGAAAGCGCCACGCTCGGCCGCCAATGGTTGATGCAGATGGGTAT
TGCGGCGGATGCGACCGATCTCACCATTCAGTACTGCATGTCTCACTGCC
GCCACATCATGCAATCCGTTGATGCAGATGGGTATTGCGGCGGATGCGAC
CGATCTCACCATTCAGTACTGCATGTCTCACTGCCGCCACATCATGCAAT
CCGTGGAGATTCCGGCTGTGACGCACGCGCGCAGTTCGGACGATTACAGC
GAGGACCTCACTGACCAGTGGAACATCGGCGTGGAGATTCCGGCTGTGAC
GCACGCGCGCAGTTCGGACGATTACAGCGAGGACCTCACTGACCAGTGGA
ACATCGGC
back to top