mRNA_H-fluviatilis_contig10231.523.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10231.523.1
Unique NamemRNA_H-fluviatilis_contig10231.523.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5JKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB9_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.000e-59
Identity = 104/206 (50.49%), Postives = 137/206 (66.50%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ +AW++VS D NHDFDFH++ +  +++Y   G+G   TA       G     V I+T+ C KQYK KRNF  VA+SL  LG ++ HNFA TSHF+G HDGIGG+ K + R         R+H+ +AA DF   +A
Sbjct:   32 YIHHHELAKWQRQAHNMCLATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA-------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRLGAVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKRGQ--RIHNTQAAADFLQVYA 228
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 9.460e-58
Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ + W+ VS D NHDFDFH++ +  +++Y   G+G  ATA       G     V I+T+ C KQYK KRNF  VA+SL  LGV++ HNFA TSHF+G HDGIGG+ K + R         R+HD  AA DF   +A
Sbjct:  262 YIHHHELAKWQRQAHNMCLATFSKGELLVETDFIEKYKHEAGAILTCATAPSTTMMVALVHHSPDDDGRHETDTWVVVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA-------GTPVPTVHIFTDGCAKQYKGKRNFHAVAKSLHRLGVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKRGQ--RIHDTEAAADFLKAYA 458
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.400e-56
Identity = 105/206 (50.97%), Postives = 138/206 (66.99%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ +AW++VS D NHDFDFH++ +  +++Y   G+G  ATA       G     V I+T+ C KQYK K NF  VA+SL  LGV++ HNFA TSHF+G HDGIGG+ K + R         R+H+ +AA DF   +A
Sbjct:  284 YIHHHELAKWQRQAHNMCLATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRAATA-------GTPVPTVHIFTDGCAKQYKGKHNFYAVAKSLHRLGVVLIHNFAVTSHFKGAHDGIGGLLKALLREAEKRGQ--RIHNTQAAADFLQVYA 480
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.720e-56
Identity = 108/206 (52.43%), Postives = 137/206 (66.50%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ +AW++VS D NHDFDFH++ +  ++QY   G+G  ATA       G     V I+T+ C KQYK KRNF  VA+SL  LG I+ HNFA TSHF+G HDGIGG+ K + R         R+HD  AA DF   +A
Sbjct:  550 YLHHHELAKWQRQAHNMCLATFSKGELLVETDFIEKYKHEAGAILTCATAPSTTMMVALVHHSPDDNGRHETDAWVFVSSDPNHDFDFHIYAMDIILQYYITGDGRAATA-------GTPTPTVHIFTDGCAKQYKGKRNFHAVAKSLHRLGAILIHNFAVTSHFKGAHDGIGGLLKALLREAEKRGQ--RIHDTEAAADFLKAYA 746
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.500e-56
Identity = 102/206 (49.51%), Postives = 136/206 (66.02%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ +AW++VS D NHDFDFH++ +  +++Y   G+G   TA       G     V I+T+ C KQYK KRNF  VA+SL  LGV++ HNFA TSHF+   DGIGG+ K + R     +   R+ + +AA DF   +A
Sbjct:   32 YIHHHELAKWQRQAHNMCLATFGKGELLVETDFIEKYKHEAGAVLTCATAPSTTMMVALVHHSPDDDGRHETDAWVFVSSDPNHDFDFHIYAMDIILRYYITGDGRADTA-------GTPVPTVHIFTDGCAKQYKGKRNFYAVAKSLHRLGVVLIHNFAVTSHFKSADDGIGGLLKALSRE--TEERGQRIRNTQAAADFLQVYA 228
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.440e-55
Identity = 108/206 (52.43%), Postives = 137/206 (66.50%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPIRVHDARAAYDFPSTWA 2331
            Y+ HH +AKWQR  HNMCLA   +G L++E+DFIEK+K EAGA +TC TAP+ T+MV LV HSPD  GRH+ +AW++VS D NHDFDFH++ +  ++QY   G+G  ATA       G     V I+T+ C KQYK KRNF  VA+SL  LG I+ HNFA TSHF+G HDGIGG+ K + R         R+HD  AA DF   +A
Sbjct: 1174 YLHHHELAKWQRQAHNMCLATFSKGELLVETDFIEKYKHEAGAILTCATAPSTTMMVALVHHSPDDNGRHETDAWVFVSSDPNHDFDFHIYAMDIILQYYITGDGRAATA-------GTPTPTVHIFTDGCAKQYKGKRNFHAVAKSLHRLGAILIHNFAVTSHFKGAHDGIGGLLKALLREAEKRGQ--RIHDTEAAADFLKAYA 1370
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 3.830e-54
Identity = 139/382 (36.39%), Postives = 197/382 (51.57%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSPDAAGRHKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKM-RRAELNTDMPIRVHDARAAYDFPSTWA-------NGMWKTRKLFTRRGSRTRLGKPTLFGSPMAQSVALPSPFRHPRARGRQATNLSVRGGFRLA---SRG----------RGRKHSSVRG*GGGGGWTRESGE-------EKIKNPFELGVREASCFCSSCKDQGFG*CKIRQEDSSVVGKFSVIKVNQVF*LRSVGARTT 2775
            YM+HHA+AKWQR  H MC+A L+QG L++E+DFIEK++ EA   +TC TAPT T+MV LV HSPD  G H+ +AWI++S D NHDFDFH   +  +V + T G    ATA       G    RV ++T+ C KQYK KRNFR VA+SL  LGV + HNFA TSHF+GTHDGIG + K++ R AE++     R+ D   A++F   +A        G + T   +  +    R   P     P      +P   +     G +     V+  F L    S G           G K  + R       W  +          +K    ++L VR ASC+CS+C+   +G C + +    +VG+       ++   R++G + T
Sbjct:  535 YMEHHALAKWQRQAHKMCMATLRQGELLIETDFIEKYRHEARVVLTCATAPTTTMMVALVHHSPDNRGEHETDAWIFLSSDPNHDFDFHHAAMEVVVAHYTTGPKSAATA-------GSAAPRVHMFTDGCGKQYKGKRNFRAVAQSLRRLGVRILHNFAVTSHFKGTHDGIGALMKRLLRNAEMHG---TRIPDVDVAHEFLLGYAVEADKAREGHFTTWSPYRIKSFEVRKFGPKEIPRPPIDLTGIPGSSKLYFFTGTEDEQEDVQDTFSLVWATSVGVQTDDFVVGAAGDKVLTAR------KWVVDESRARXXXAPKKFTRSWKLRVRGASCYCSTCRIGCYGDCMVAKVYPDLVGEVMEKSGKEMVGRRTLGTQLT 900
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5KYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP1_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.340e-44
Identity = 94/197 (47.72%), Postives = 121/197 (61.42%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSP---DAAGR-HKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKK-MRRAELNTDMPIRV 2289
            Y+ HHA AKWQ   H +CL+    G +++E+DFIEK+    GA +TC   P  TLMV +V  SP   +  GR H+ E WI  S D  HDFDFH H L ++  Y   G G +ATA   E    +   R+ ++T+ C KQYK +RNFR +A+S+  LG IV+H+FAATSHFEG HDGIGGVAK  MR +E   D    V
Sbjct:  234 YIAHHAEAKWQTTSHGLCLSTFHDGDIVIETDFIEKYSHVPGAVLTCARHPQTTLMVAIVHFSPQRWEGGGRVHQTETWISTSEDPAHDFDFHRHALTQIADYYLDGPGSDATAAARE---AQRIPRMHMFTDGCAKQYKGRRNFRFLADSVRQLGFIVEHHFAATSHFEGCHDGIGGVAKNAMRMSEQRGDRAAGV 427
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.020e-44
Identity = 89/194 (45.88%), Postives = 117/194 (60.31%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSP---DAAGR-HKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKKMRRAELNTDMPI 2283
            YM HH+ AKWQRN HN CL   + G +++E+DFIEK+  E    +TC    T TLMV +V   P   +  GR H  E W++ S D  HDFDFHLH L+++  Y   GEG  ATA   E        R+ ++T+ C KQYK +RNFR ++ S+  LG +V+H+FAATSHF+G HDGIGGV K   +       PI
Sbjct:  383 YMAHHSKAKWQRNCHNTCLRTFQDGDIVIETDFIEKYTHEPQKVLTCARHDTTTLMVAIVHFCPQEWEGGGRVHLSETWVFASADPAHDFDFHLHALKQIADYYLDGEGSAATACARE---DNRVPRMLMFTDGCAKQYKGRRNFRFLSNSVRELGFVVEHHFAATSHFKGCHDGIGGVVKNAMKKSEQLGKPI 573
[Close]
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.610e-44
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = 1 
Query: 1714 YMQHHAIAKWQRNVHNMCLAGLKQGHLIMESDFIEKFKCEAGATVTCRTAPTVTLMVYLVRHSP---DAAGR-HKKEAWIYVSGDKNHDFDFHLHDLREMVQYCTKGEGIEATAPGAEWEGGEHFARVCIWTERCTKQYKAKRNFRMVAESLMVLGVIVDHNFAATSHFEGTHDGIGGVAKK-MRRAE 2262
            YM HH+ AKWQRN HN CL   + G +++E+DFIEK+  E    +TC    T TLMV +V   P   +  GR H  E W++ S D  HDFDFHLH L+++  Y   GEG  ATA   E        R+ ++T+ C KQYK +RNFR ++ S+  LG IV+H+FAATSHF+G HDGIGGV K  M+++E
Sbjct:  345 YMAHHSKAKWQRNCHNTCLRTFRDGDIVIETDFIEKYTHEPSKVLTCARHDTTTLMVAIVHFCPQEWEGGGRVHLSETWVFASADPAHDFDFHLHALKKIADYYLDGEGSAATASARE---DNRVPRMLMFTDGCAKQYKGRRNFRFLSNSVRELGFIVEHHFAATSHFKGCHDGIGGVVKNAMKKSE 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10231.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKB9_9PHAE1.000e-5950.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY26_9PHAE9.460e-5851.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.400e-5650.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE1.720e-5652.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N6_9PHAE2.500e-5649.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.440e-5552.43MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K7E6_9PHAE3.830e-5436.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYP1_9PHAE2.340e-4447.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIV9_9PHAE4.020e-4445.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI78_9PHAE5.610e-4447.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10231contigH-fluviatilis_contig10231:1718..6526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3185
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10231.523.1prot_H-fluviatilis_contig10231.523.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10231 2313..3944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.6423278-UTR-H-fluviatilis_contig10231:1717..23121622929060.6423278-UTR-H-fluviatilis_contig10231:1717..2312Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 1718..2312 +
1691135167.5632012-UTR-H-fluviatilis_contig10231:1717..23121691135167.5632012-UTR-H-fluviatilis_contig10231:1717..2312Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 1718..2312 +
1622929060.7227879-UTR-H-fluviatilis_contig10231:3944..40301622929060.7227879-UTR-H-fluviatilis_contig10231:3944..4030Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 3945..4030 +
1691135167.6112854-UTR-H-fluviatilis_contig10231:3944..40301691135167.6112854-UTR-H-fluviatilis_contig10231:3944..4030Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 3945..4030 +
1622929060.7592278-UTR-H-fluviatilis_contig10231:5011..58911622929060.7592278-UTR-H-fluviatilis_contig10231:5011..5891Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 5012..5891 +
1691135167.621439-UTR-H-fluviatilis_contig10231:5011..58911691135167.621439-UTR-H-fluviatilis_contig10231:5011..5891Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 5012..5891 +
1622929060.817007-UTR-H-fluviatilis_contig10231:5934..65261622929060.817007-UTR-H-fluviatilis_contig10231:5934..6526Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 5935..6526 +
1691135167.6349225-UTR-H-fluviatilis_contig10231:5934..65261691135167.6349225-UTR-H-fluviatilis_contig10231:5934..6526Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10231 5935..6526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.6599069-CDS-H-fluviatilis_contig10231:2312..25071622929060.6599069-CDS-H-fluviatilis_contig10231:2312..2507Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10231 2313..2507 +
1691135167.5729284-CDS-H-fluviatilis_contig10231:2312..25071691135167.5729284-CDS-H-fluviatilis_contig10231:2312..2507Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10231 2313..2507 +
1622929060.701821-CDS-H-fluviatilis_contig10231:3107..39441622929060.701821-CDS-H-fluviatilis_contig10231:3107..3944Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10231 3108..3944 +
1691135167.5908291-CDS-H-fluviatilis_contig10231:3107..39441691135167.5908291-CDS-H-fluviatilis_contig10231:3107..3944Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10231 3108..3944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10231.523.1

>prot_H-fluviatilis_contig10231.523.1 ID=prot_H-fluviatilis_contig10231.523.1|Name=mRNA_H-fluviatilis_contig10231.523.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=344bp
MPLAARAEALRARAVMNNDLPIARAQPCRRRPLREVEINPVLAAAGNLDH
AARTGRTSSTLSVLRSTQLPEPAQRAASSRKVSTGGSTGVTGSSSRREAR
ENSDPHDGSQGGGLGNDEWTAADIRAAGKPELMTELGLVWVEQGRGGVQS
ESDAVAALQAEIGSLSAVLSITEKAAAAEQEKVYEALTGEIAESLKALQE
QCETDVGRKTYQIALAVVAGTRARSSDISLVKQASSFCVRWHTFLEARGR
MQRACHHLSPTTAVAAGWYVYFERKTSRDVSPPELQAMMRQFRHLHDVSR
ASGNSGDGDMRRESKARDAPGHPRRQIKHTGGMGHVVCRRFLQ*
back to top

mRNA from alignment at H-fluviatilis_contig10231:1718..6526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10231.523.1 ID=mRNA_H-fluviatilis_contig10231.523.1|Name=mRNA_H-fluviatilis_contig10231.523.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4809bp|location=Sequence derived from alignment at H-fluviatilis_contig10231:1718..6526+ (Heribaudiella fluviatilis SAG_13_90)
GAGCTATGAACATGGCACTACAAACAAAGAGAAGACACAGATCCAGCAGA
CCAGCAGACAACAAGCAATCCAATACTGAGCCACAGAAAGGAGTCTTGGG
AATGGACAACGACCGCAATTCATTAGGCAGGTTCCACGATCGAGTGTCAA
CTTCAAGGTCATTTTCTGTCAGAGACATCTTACCCGGATTTGACCGCACG
TCCGAACGCAGAAGTGGTATCACCGCCCATCATAACCGACGATGGTTCGG
GCCATTGACACACGAAGAACGCGAAGATCGCAGTAATTCTCTGGCCACGC
CATTCAAGGTAGTTACCTTAGTGGGGATAGAGCACAAGTTTGCCGTCAGG
CGGTCGAACATGATCAAATAACGTGGGCATGAAGCCGGCCGCCGGCGGTG
ACGCTAGGATTACCAAAATTCCTGGAAGCGTGGATCGAGAAATTGAGGTA
AACGGGAATGCCCGAAAGGTCAAGAACTCCTGGAGGAAAAAAGGACAAGG
TCGCGTTTTGCTCACGTCGGTGCGGTTGAGACCTTGCGGGAAGCCGTATT
GTAGCGTGCTCAGGGCAAATATCAGGAACAATTTGGCGGCACTGGATGCC
GCTTGCAGCACGTGCCGAAGCGCTACGGGCGAGGGCCGTGATGAATAACG
ATTTGCCGATCGCGCGGGCACAGCCTTGCCGTCGAAGGCCCCTGAGAGAG
GTGGAGATCAACCCTGTTTTGGCTGCTGCTGGCAATTTGGATCATGCCGC
CAGGACTGGACGAACGAGCTCAACGCTATCAGTACTGAGGGTGAGTTTGT
CGCTACACCAACAGCCTGCATAGGATAACGCATCCGGCACCGCACGACTT
GTAGCTTGTGGAGTCTGTGTCATAAACGATGCCGGAACAACGTGCTTCAA
TTGTTGCAGAACCGACTGAATCGCGTACTCCTCACGGTCGGCTCCTTGAA
GCGGAGTGATTTCACGTAAAGCGTAAAAGAGCAATGCCCCGGAAGTGTAC
CATATGCACGACCCAAGGAAGTACATACAGGAGCGCACACAGTGCGATAC
AAGTGTCGTGCAGTGCGTCCTCGTCTGGACGTCCAAGAGAGGTCAACACC
GTTCACTGTTTACCAGCTATTCAATGCCCAAGAGTTACGTTCAGCTATGA
TATCGCTCTGTTTGTAGTTTCAAGCATAGAGGAGGAGCTCCATGTGGGTA
CAACGGCCGACTCTCGTACTTGCGCGTGGGCCGAACGCTGCCGCACTGCC
GTTTTGCCGGTGCATAGCAGGCATACAGAGTCGTGTCAACGGCGTTACGT
GTATCGAGGTATGTGTATCTTATGTTGTGCACTTGAGGTAACACTCTGCC
TGATATGATGTATGTGTTTTTTTGCGCGTTTGCCGCACAGAGCACGCAGC
TGCCGGAACCAGCACAGCGCGCAGCCTCCAGCAGAAAGGTGTCAACCGGC
GGGTCTACCGGGGTGACCGGCAGTAGCAGTCGGAGGGAAGCCCGCGAGAA
CAGCGACCCGCACGACGGCTCTCAAGGCGGAGGACTAGGCAATGATGAGT
GGACTGCTGCCGACATCCGAGCTGCAGGGAAGCCCGAGTTGATGACGGAG
TTAGGCTTGGTCTGGGTCGAGCAGGGTCGCGGCGGCGTTCAATCTGAATC
AGACGCGGTGGCTGCCCTTCAGGCTGAGATTGGTTCCCTTTCTGCTGTGT
TGAGCATAACGGAGAAGGCGGCGGCCGCCGAACAAGAAAAAGTTTATGAA
GCATTGACCGGGGAGATCGCAGAATCACTTAAGGCGTTGCAGGAGCAATG
CGAAACCGATGTGGGCCGCAAGACGTACCAGATTGCGCTTGCTGTGGTGG
CGGGGACACGGGCACGTTCGTCGGACATTTCCCTTGTGAAACAGGCTTCA
AGCTTCTGTGTTCGTTGGCACACATTCCTTGAAGCGCGAGGGAGGATGCA
GCGCGCCTGCCACCATCTCTCTCCGACAACCGCCGTCGCCGCTGGTTGGT
ATGTTTACTTCGAGCGCAAGACCAGCCGCGACGTGAGTCCTCCGGAATTA
CAAGCGATGATGCGCCAGTTCAGGCACCTCCATGATGTATCCCGTGCGTC
AGGTAACTCTGGTGACGGAGATATGCGGCGAGAATCGAAGGCCCGAGATG
CGCCAGGTCACCCACGGAGACAGATCAAACATACAGGAGGCATGGGGCAT
GTCGTCTGCCGACGATTCCTTCAGTGACCATAGTATTTCGCATACAGAGC
AGGGAGAAGGATTCAAGGACCCGGGCCCCACGATCTTTCTGTAAGCAAGT
TGTCCGTGCCCAGGTAAGAGGCGTCACCCTCACAGAGTTATTTCTATGGT
TCGTTTCGGGTATGCATCGATGTAGACCCTAATACGTTCTTGTTTTCGTC
CCTTCGTTGACGTTTTTTGCATACTGCAGCTGTGCAATTGATTTAGCCCC
AGTTGTGCACGCCGTTCAATACCAACATGCATGTCGGCCTAGTAACAAGC
ACATGTCACGTGAAGGTCGTTTTGTTTGTACGCAGTCCCGCCGAAGGCAC
AGCAATGTTCGCGCGCGATCCGCACCCATACCTGATGACGTTGAAAGTAC
GATGCACCAAAAGGAATGTGTGAGCGCAAGTGTACCTGGTGCGCGGCTGG
GTGCGAAAAATAGACGAGCATGTTCCAGAACCTGGGCAATTTCTCGGAAG
TCTCGCTTGCGAGAAAGTGAAATTACTTGGCAGCGATTCCGCGGGGGGTG
CGAGTTCATGAGAACGAAAGCGGATTGCGTCCGATTAAAACGTAAGGCAT
GCAGTTTCGACAACGCCAATGGCATTCCTGAGTGTGACGCTTGGAATAAA
TGGGGCAGTCGTAGAGTGGCATGGATTATATTCGAAGACATCACACAAGC
TGACGGTACCGTGGTCAAGAAGCAACAGGTGCCAACAGAGGGCACACTGA
ATAAGCTTTGGAGCGAGTTGAAGGAACACACGGAGACGGTGGAAACAGAA
AACGATTGCTACGAACAAAAAACGGTTCAATGTTGGGTTTTTTTTTCTTA
CCATCACGTGGGCCAACCACTGATAAGTTTCTCCTGCTCCTTTAGCGGAG
CGGATTCAGGTTTTTGTTGTTGCACGGCAGGTATCTGCGCTCGTTACCCC
ACTTTTCGCGCTCATGCCCCGCCTCATGCCCCGCCTCTCCCCTCTTTTTT
GAATATGCCTTGTATCCCGCGAGCTGATATCAACTTGTCGGTTGCCACCT
CCCTGCTTTTCGTCCTCTGCATTTGCTGATTTATTTTATTTCAGTACATG
CAACATCACGCCATCGCGAAGTGGCAGCGCAACGTCCACAACATGTGCCT
GGCGGGTTTGAAGCAAGGACATCTTATAATGGAGTCCGACTTCATAGAAA
AGTTTAAGTGTGAGGCTGGTGCAACCGTGACGTGCCGTACTGCACCCACA
GTGACGCTCATGGTGTACCTTGTGCGCCACAGCCCCGACGCGGCCGGACG
GCACAAAAAGGAGGCCTGGATATACGTGTCCGGCGACAAAAACCACGACT
TCGACTTCCACCTGCACGATCTCAGAGAAATGGTGCAGTACTGCACGAAG
GGAGAGGGTATTGAGGCGACAGCGCCGGGGGCGGAGTGGGAGGGGGGGGA
GCACTTTGCCCGGGTATGCATTTGGACCGAGAGATGTACTAAGCAATACA
AGGCGAAAAGAAACTTCCGGATGGTGGCGGAAAGCCTTATGGTGCTCGGC
GTCATCGTCGACCACAACTTCGCGGCAACGTCGCACTTCGAAGGCACGCA
CGACGGAATCGGAGGTGTGGCGAAAAAGATGCGCCGAGCGGAGTTGAACA
CCGACATGCCGATTCGGGTTCACGACGCTCGTGCTGCTTACGACTTTCCG
AGCACATGGGCCAACGGCATGTGGAAGACTCGGAAGCTTTTTACGCGACG
TGGTTCCCGTACAAGGTTAGGCAAACCCACGTTGTTTGGGTCTCCTATGG
CTCAGTCCGTCGCCCTTCCGTCGCCCTTCCGTCACCCTAGAGCCCGTGGT
CGGCAAGCGACAAATCTTTCAGTTCGAGGGGGGTTTCGACTCGCAAGTCG
GGGAAGGGGACGCAAGCACTCAAGCGTCCGAGGGTGAGGAGGAGGCGGAG
GTTGGACGCGTGAGAGTGGTGAAGGGGTGGGGAGATTTTACACCACCAGA
GGTGGTGTTCGCTGATCAAAAGATCAAAAATCCTTTTGAGCTGGGGGTAC
GAGAGGCTTCCTGCTTTTGCTCGTCATGCAAGGACCAGGGATTTGGCTAG
TGTAAAATCCGACAAGAAGACTCCTCAGTCGTGGGCAAGTTTAGCGTAAT
CAAGGTCAACCAGGTGTTTTAGCTTCGTTCTGTCGGTGCTCGAACTACCG
AAGCCGGCTTCTCACTGGAGAAAGCGGCGTCAAGTGGACAGAGCGCTACG
TTGCGGCTTCTCGCGCCCAAAGTGCGAGGTTGGTGAAAATATGCTCCAGT
CACAGAGATTTTTTGTTTTTTTCATGTGGTTTTCATCGTCGTGAGTTACT
GCATGTGGATTATCGGTGCTTTCATCCTGCGGCTCAATTTCTTCGCGTTC
TCGCTGTCCCCGGTTTGTTATCCTAGGGAGGTGATAATTAAGTATCCCCC
GGCGACGTAAAATGGCATGGAGGATAGCACGTGATACGGCTTGGGCGCCT
GGTTCCGTTGGTGCTGTCGTATGGCTTTTTTTGCGCTTCATTTGCAGCAC
CTTGAATTCCAATCTCCATCCCCGGTTTATCCTCGGGGTGGGGGATGATA
AATAAACCC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10231:1718..6526+

>mRNA_H-fluviatilis_contig10231.523.1 ID=mRNA_H-fluviatilis_contig10231.523.1|Name=mRNA_H-fluviatilis_contig10231.523.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2064bp|location=Sequence derived from alignment at H-fluviatilis_contig10231:1718..6526+ (Heribaudiella fluviatilis SAG_13_90)
ATGCCGCTTGCAGCACGTGCCGAAGCGCTACGGGCGAGGGCCGTGATGAA
TAACGATTTGCCGATCGCGCGGGCACAGCCTTGCCGTCGAAGGCCCCTGA
GAGAGGTGGAGATCAACCCTGTTTTGGCTGCTGCTGGCAATTTGGATCAT
GCCGCCAGGACTGGACGAACGAGCTCAACGCTATCAGTACTGAGGATGCC
GCTTGCAGCACGTGCCGAAGCGCTACGGGCGAGGGCCGTGATGAATAACG
ATTTGCCGATCGCGCGGGCACAGCCTTGCCGTCGAAGGCCCCTGAGAGAG
GTGGAGATCAACCCTGTTTTGGCTGCTGCTGGCAATTTGGATCATGCCGC
CAGGACTGGACGAACGAGCTCAACGCTATCAGTACTGAGGAGCACGCAGC
TGCCGGAACCAGCACAGCGCGCAGCCTCCAGCAGAAAGGTGTCAACCGGC
GGGTCTACCGGGGTGACCGGCAGTAGCAGTCGGAGGGAAGCCCGCGAGAA
CAGCGACCCGCACGACGGCTCTCAAGGCGGAGGACTAGGCAATGATGAGT
GGACTGCTGCCGACATCCGAGCTGCAGGGAAGCCCGAGTTGATGACGGAG
TTAGGCTTGGTCTGGGTCGAGCAGGGTCGCGGCGGCGTTCAATCTGAATC
AGACGCGGTGGCTGCCCTTCAGGCTGAGATTGGTTCCCTTTCTGCTGTGT
TGAGCATAACGGAGAAGGCGGCGGCCGCCGAACAAGAAAAAGTTTATGAA
GCATTGACCGGGGAGATCGCAGAATCACTTAAGGCGTTGCAGGAGCAATG
CGAAACCGATGTGGGCCGCAAGACGTACCAGATTGCGCTTGCTGTGGTGG
CGGGGACACGGGCACGTTCGTCGGACATTTCCCTTGTGAAACAGGCTTCA
AGCTTCTGTGTTCGTTGGCACACATTCCTTGAAGCGCGAGGGAGGATGCA
GCGCGCCTGCCACCATCTCTCTCCGACAACCGCCGTCGCCGCTGGTTGGT
ATGTTTACTTCGAGCGCAAGACCAGCCGCGACGTGAGTCCTCCGGAATTA
CAAGCGATGATGCGCCAGTTCAGGCACCTCCATGATGTATCCCGTGCGTC
AGGTAACTCTGGTGACGGAGATATGCGGCGAGAATCGAAGGCCCGAGATG
CGCCAGGTCACCCACGGAGACAGATCAAACATACAGGAGGCATGGGGCAT
GTCGTCTGCCGACGATTCCTTCAGTGAAGCACGCAGCTGCCGGAACCAGC
ACAGCGCGCAGCCTCCAGCAGAAAGGTGTCAACCGGCGGGTCTACCGGGG
TGACCGGCAGTAGCAGTCGGAGGGAAGCCCGCGAGAACAGCGACCCGCAC
GACGGCTCTCAAGGCGGAGGACTAGGCAATGATGAGTGGACTGCTGCCGA
CATCCGAGCTGCAGGGAAGCCCGAGTTGATGACGGAGTTAGGCTTGGTCT
GGGTCGAGCAGGGTCGCGGCGGCGTTCAATCTGAATCAGACGCGGTGGCT
GCCCTTCAGGCTGAGATTGGTTCCCTTTCTGCTGTGTTGAGCATAACGGA
GAAGGCGGCGGCCGCCGAACAAGAAAAAGTTTATGAAGCATTGACCGGGG
AGATCGCAGAATCACTTAAGGCGTTGCAGGAGCAATGCGAAACCGATGTG
GGCCGCAAGACGTACCAGATTGCGCTTGCTGTGGTGGCGGGGACACGGGC
ACGTTCGTCGGACATTTCCCTTGTGAAACAGGCTTCAAGCTTCTGTGTTC
GTTGGCACACATTCCTTGAAGCGCGAGGGAGGATGCAGCGCGCCTGCCAC
CATCTCTCTCCGACAACCGCCGTCGCCGCTGGTTGGTATGTTTACTTCGA
GCGCAAGACCAGCCGCGACGTGAGTCCTCCGGAATTACAAGCGATGATGC
GCCAGTTCAGGCACCTCCATGATGTATCCCGTGCGTCAGGTAACTCTGGT
GACGGAGATATGCGGCGAGAATCGAAGGCCCGAGATGCGCCAGGTCACCC
ACGGAGACAGATCAAACATACAGGAGGCATGGGGCATGTCGTCTGCCGAC
GATTCCTTCAGTGA
back to top