mRNA_H-fluviatilis_contig10230.521.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-fluviatilis_contig10230.521.1
Unique Name	mRNA_H-fluviatilis_contig10230.521.1
Type	mRNA
Organism	Heribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)

Homology

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BLAST of mRNA_H-fluviatilis_contig10230.521.1 vs. uniprot
Match: D7FXW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.630e-33
Identity = 90/170 (52.94%), Postives = 108/170 (63.53%), Query Frame = 1

Query:    1 WMLAGDS-------GEAASIGVTNGDGREGNGKEGPNQQGDVPAVVPSVSEREHDDSSRVGAAAGEQE---SDSRGLMEVLAKLTDRDAKEVETRTRHHRAFLTDGVVPHVAAGLLAAAELRPADPFEFLAGYLIRQGQALQRKAEAEAALKYHAGLALLKEMEEWDNNQ 480
            WML GDS       GE A   +T+    +G G+ G N + +  A    + + +   S+   AA  +     SD   L EVLAKLT RDAKEVE RTR HR FLT+GVVP VAAGL+AAAE +P + FEFLA YLIR GQALQRKAE EAA KY AGLALL+E+E  DN +
Sbjct:  598 WMLRGDSVDVYVEEGEHADRNMTHKKQADG-GEAGANGEEEANAADGGI-DTDTTRSAEPAAARNDSNPEWSDDLNLSEVLAKLTARDAKEVEMRTRRHRNFLTEGVVPQVAAGLVAAAEAQPENVFEFLANYLIRAGQALQRKAEEEAASKYQAGLALLEELEANDNKR 765

[Close]

BLAST of mRNA_H-fluviatilis_contig10230.521.1 vs. uniprot
Match: A0A6H5KT96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT96_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.470e-18
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1

Query:  187 DSRGLMEVLAKLTDRDAKEVETRTRHHRAFLTDGVVPHVAAGLLAAAELRPADPFEFLAGYLIR 378
            D   L EVLAKLT RDAKEVETRTR HR FLT+GVVP VAAGL+AAAE +P + FEFLA YLIR
Sbjct:  719 DDLNLSEVLAKLTARDAKEVETRTRRHRNFLTEGVVPQVAAGLVAAAEAQPENVFEFLANYLIR 782

The following BLAST results are available for this feature:

BLAST of mRNA_H-fluviatilis_contig10230.521.1 vs. uniprot

BLAST of mRNA_H-fluviatilis_contig10230.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FXW4_ECTSI	2.630e-33	52.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KT96_9PHAE	3.470e-18	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-fluviatilis_contig10230	contig	H-fluviatilis_contig10230:4716..7021 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_90	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	134.4
Seed ortholog evalue	4.8e-29
Seed eggNOG ortholog	2880.D7FXW4
Preferred name	AK9
KEGG rclass	RC00002
KEGG ko	ko:K18533
KEGG Reaction	R00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathway	ko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG Module	M00049,M00052,M00053
GOs	GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006174,GO:0006186,GO:0006725,GO:0006753,GO:0006754,GO:0006756,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009182,GO:0009185,GO:0009186,GO:0009199,GO:0009200,GO:0009201,GO:0009202,GO:0009205,GO:0009206,GO:0009215,GO:0009216,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009987,GO:0012505,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046056,GO:0046066,GO:0046390,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0061508,GO:0061565,GO:0061566,GO:0061567,GO:0061568,GO:0061569,GO:0061570,GO:0061571,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.	adenylate kinase activity
EggNOG OGs	COG0563@1,KOG3078@2759
EC	2.7.4.3,2.7.4.6
COG Functional cat.	F
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Exons	3
Model size	651
Cds size	504
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-fluviatilis_contig10230.521.1	prot_H-fluviatilis_contig10230.521.1	Heribaudiella fluviatilis SAG_13_90	polypeptide	H-fluviatilis_contig10230 4860..7018 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929060.5005531-UTR-H-fluviatilis_contig10230:4715..4859	1622929060.5005531-UTR-H-fluviatilis_contig10230:4715..4859	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10230 4716..4859 -
1691135167.5094206-UTR-H-fluviatilis_contig10230:4715..4859	1691135167.5094206-UTR-H-fluviatilis_contig10230:4715..4859	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10230 4716..4859 -
1622929060.5521812-UTR-H-fluviatilis_contig10230:7018..7021	1622929060.5521812-UTR-H-fluviatilis_contig10230:7018..7021	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10230 7019..7021 -
1691135167.5462174-UTR-H-fluviatilis_contig10230:7018..7021	1691135167.5462174-UTR-H-fluviatilis_contig10230:7018..7021	Heribaudiella fluviatilis SAG_13_90	UTR	H-fluviatilis_contig10230 7019..7021 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929060.5145774-CDS-H-fluviatilis_contig10230:4859..4989	1622929060.5145774-CDS-H-fluviatilis_contig10230:4859..4989	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 4860..4989 -
1691135167.5231225-CDS-H-fluviatilis_contig10230:4859..4989	1691135167.5231225-CDS-H-fluviatilis_contig10230:4859..4989	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 4860..4989 -
1622929060.525747-CDS-H-fluviatilis_contig10230:5639..5904	1622929060.525747-CDS-H-fluviatilis_contig10230:5639..5904	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 5640..5904 -
1691135167.5309565-CDS-H-fluviatilis_contig10230:5639..5904	1691135167.5309565-CDS-H-fluviatilis_contig10230:5639..5904	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 5640..5904 -
1622929060.5408256-CDS-H-fluviatilis_contig10230:6909..7018	1622929060.5408256-CDS-H-fluviatilis_contig10230:6909..7018	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 6910..7018 -
1691135167.5382564-CDS-H-fluviatilis_contig10230:6909..7018	1691135167.5382564-CDS-H-fluviatilis_contig10230:6909..7018	Heribaudiella fluviatilis SAG_13_90	CDS	H-fluviatilis_contig10230 6910..7018 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-fluviatilis_contig10230:4716..7021-
coding sequence from alignment at H-fluviatilis_contig10230:4716..7021-

protein sequence of mRNA_H-fluviatilis_contig10230.521.1

>prot_H-fluviatilis_contig10230.521.1 ID=prot_H-fluviatilis_contig10230.521.1|Name=mRNA_H-fluviatilis_contig10230.521.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=168bp
MLAGDSGEAASIGVTNGDGREGNGKEGPNQQGDVPAVVPSVSEREHDDSS
RVGAAAGEQESDSRGLMEVLAKLTDRDAKEVETRTRHHRAFLTDGVVPHV
AAGLLAAAELRPADPFEFLAGYLIRQGQALQRKAEAEAALKYHAGLALLK
EMEEWDNNQRPRAAPGC*

mRNA from alignment at H-fluviatilis_contig10230:4716..7021-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-fluviatilis_contig10230.521.1 ID=mRNA_H-fluviatilis_contig10230.521.1|Name=mRNA_H-fluviatilis_contig10230.521.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2306bp|location=Sequence derived from alignment at H-fluviatilis_contig10230:4716..7021- (Heribaudiella fluviatilis SAG_13_90)
TGGATGCTTGCGGGAGACAGCGGCGAAGCGGCATCCATTGGGGTTACCAA
TGGGGATGGGAGGGAAGGGAATGGCAAGGAGGGGCCGAATCAACAGGGCG
ACGTCCCTGCAGGTGCGCGCGGAAGCGGATTGCGGATTTTCTGTGGAGAA
ACTTGGGCTAACCACTGAAGTGGTAGCGTCGGCTCTGGCTCTTCGGTGTA
ACATTGAGACCCTCTTCTCCACATGTTCGGACTAAACTATTCCTCCGCTG
TCGCAGTTTCTTGGATGGCTCGTGTGGTTTAAGGATTTATTCGACTGCCC
TACTACTTTCCTCGGTGAACGGCGAGGTCAGTAATTACTTGCGTTTTGCT
ACTGTCATGCTCTCGATCTGATGATGTAATTTCGACACCGTTCGGCTAAC
GTCTAACGTAGGTCGCCTGCCTTCGGGCGCCGTCTGCTACGGCAACCTGA
TTTTCTCGCAAAACATCCTTCGGCTGAGAGCCTGCTGCGGTCCAATATCG
CGGCCTGGAGGCACTTCGAATGAAAACTACATCAACACGGACAGAAAAAC
CTCAAAATGTGTTCGCATGTCGGCGAAAGTCGGTGTGCAGGTAGAAAACA
AAGAAGGCAACCTCCGCACGTCACGCCTGTGGTGCCGATCAAACTTTGCG
CATGTCCACAATGCGTATCCTCCAGAAGGACGGCATGTGGTGGACATCGA
AAATCACGACAGATTGGTAGATTTACCTACGCCAATGAGCGCAGAATAAA
AAAACGGCTTGAATAAGGCTGGGGCTCACTCCACCCCCGGAAGGATCCGA
CAAAGGCTCGGGTCTCAGGTGGTGGAGCTCGCGCATTGCTTCCTTCAGTC
AACACCCCGTCGAACCGACCGCCTTGAACCATCTGGCTTTATCCTGAAAG
TTCAACAGGGTATCACATGCACGCCAGAAACAGGTCAAAGTACACGTCAG
CAACATGTTCAGCACATTACAACATTTTGGGCCCGCCTTAACTGACTCCC
CCCTCCAGCGCGCCAAATCTGCCCCCTCCCCGCCTCCTCCCCCCTTCCTG
TCCTTCGCCTCCTACCGCATTCTGGCCACCACCGTGCATCACCCTTCTTG
CACACACGGTGCCGTAGTCGTGCCGTCGGTCTCCGAACGTGAACACGACG
ATTCGTCGAGGGTTGGGGCGGCCGCGGGGGAGCAGGAATCAGATAGCCGT
GGCCTTATGGAAGTGCTCGCAAAGCTGACGGATCGCGACGCGAAAGAGGT
GGAAACGCGAACACGCCACCACCGCGCGTTTTTGACAGATGGTGTTGTGC
CACATGTAGCCGCAGGCTTGCTTGCGGCCGCTGAACTTCGCCCGGCAGAC
CCCTTCGAATTCCTTGCCGGCTACCTCATCAGGTTGGAAGTTTGTTGTTG
CGGGAACAGGTGGGGTTACTTCTTGCGGGTTATTTCCACCCATTGTGCAT
GATAAGTGTCTTGTGGTAGCCCATACGGAGTGTGGGATTGTGCACAAATT
GCGTTGCTCGTTCATTTTATGTGAGGATAGCGCAGTAAATGTCGCTCATG
TAGTCGCAGACTTGTTGCGAGTCGGGGGTCACGAAGAGGTGAACTAACGC
ATCGGGACATGTCATCCTCGGAGAATTGTTAACGTTGCACCCAAAACACT
GTGGGTAGTGATGTATCTCTACCTTTATCAGGTCGTCTTGCGTTGCATAA
AGTAAGCGATGATCGGGCCGATAATTGGACCCGGCAGTAGGTGGGAGTGC
ACGACCCTGCAAGCCTCATTTTCCGATTCTGCTCCCACCCGACGTCCACG
GAAGAGAAAAACTTGAGTAATCTTCGTCGAGTTATTACGCAATACGGTAA
TGGTGGTGGTGATGATGACGCCTTTGTTCTTCGCATGATAATGACTTCGC
GCACCCGCCAGACCAATGGCGTGGCGAGCCATCGTACGTAACTCCACCCG
CATTGCCGTAGGGTACAACAACTGGTGGAACTGATACTGGAAATCGATCG
TTTGCTGCTGTGCGACGCTGTCATGTGAGCAGGCAAGGGCAAGCGCTTCA
GCGTAAGGCAGAAGCGGAGGCTGCGCTGAAGTACCATGCAGGTCTGGCGT
TGCTGAAGGAGATGGAGGAGTGGGACAACAACCAGCGCCCAAGGGCTGCG
CCTGGCTGTTGAGTCGTTTTGTTCAGAACGTCATGCGCGTACCCAGCTCA
GTCTCTCTCTGCACCTCAATAAACTTAGATCCGATATATAGTGAGCGAGG
GCTACCTTTGTCTTGTGGTCTTGCCCTGGGTTGGGTGAGAGTGCATTCGG
AATCAC

Coding sequence (CDS) from alignment at H-fluviatilis_contig10230:4716..7021-

>mRNA_H-fluviatilis_contig10230.521.1 ID=mRNA_H-fluviatilis_contig10230.521.1|Name=mRNA_H-fluviatilis_contig10230.521.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1008bp|location=Sequence derived from alignment at H-fluviatilis_contig10230:4716..7021- (Heribaudiella fluviatilis SAG_13_90)
ATGCTTGCGGGAGACAGCGGCGAAGCGGCATCCATTGGGGTTACCAATGG
GGATGGGAGGGAAGGGAATGGCAAGGAGGGGCCGAATCAACAGGGCGACG
TCCCTGCAGATGCTTGCGGGAGACAGCGGCGAAGCGGCATCCATTGGGGT
TACCAATGGGGATGGGAGGGAAGGGAATGGCAAGGAGGGGCCGAATCAAC
AGGGCGACGTCCCTGCAGTCGTGCCGTCGGTCTCCGAACGTGAACACGAC
GATTCGTCGAGGGTTGGGGCGGCCGCGGGGGAGCAGGAATCAGATAGCCG
TGGCCTTATGGAAGTGCTCGCAAAGCTGACGGATCGCGACGCGAAAGAGG
TGGAAACGCGAACACGCCACCACCGCGCGTTTTTGACAGATGGTGTTGTG
CCACATGTAGCCGCAGGCTTGCTTGCGGCCGCTGAACTTCGCCCGGCAGA
CCCCTTCGAATTCCTTGCCGGCTACCTCATCAGTCGTGCCGTCGGTCTCC
GAACGTGAACACGACGATTCGTCGAGGGTTGGGGCGGCCGCGGGGGAGCA
GGAATCAGATAGCCGTGGCCTTATGGAAGTGCTCGCAAAGCTGACGGATC
GCGACGCGAAAGAGGTGGAAACGCGAACACGCCACCACCGCGCGTTTTTG
ACAGATGGTGTTGTGCCACATGTAGCCGCAGGCTTGCTTGCGGCCGCTGA
ACTTCGCCCGGCAGACCCCTTCGAATTCCTTGCCGGCTACCTCATCAGGC
AAGGGCAAGCGCTTCAGCGTAAGGCAGAAGCGGAGGCTGCGCTGAAGTAC
CATGCAGGTCTGGCGTTGCTGAAGGAGATGGAGGAGTGGGACAACAACCA
GCGCCCAAGGGCTGCGCCTGGCTGTTGAGCAAGGGCAAGCGCTTCAGCGT
AAGGCAGAAGCGGAGGCTGCGCTGAAGTACCATGCAGGTCTGGCGTTGCT
GAAGGAGATGGAGGAGTGGGACAACAACCAGCGCCCAAGGGCTGCGCCTG
GCTGTTGA