mRNA_H-fluviatilis_contig102286.516.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102286.516.1
Unique NamemRNA_H-fluviatilis_contig102286.516.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A7S4PDZ4_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PDZ4_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 1.800e-36
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMMTEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQSTGE 399
            +R++D+ HIIFFE  V D +   GF E PG   YN+RQ  SYH+YCAP +  GDPT   EC+ +D   F   T D   + VGGM+TEFGAM     G+ ++ +I   A+   Q W+YWQFK + D+TTQ TGE
Sbjct:  273 IRKVDNDHIIFFERCVLDTIFPSGFTEAPGSEEYNNRQALSYHIYCAPVDSEGDPTSDIECDAIDTDLFGVMTKDAEKLSVGGMLTEFGAMSNATKGIKNIEFITNMAEQKFQSWSYWQFKFYEDLTTQGTGE 405          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A813RT94_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813RT94_9BILA)

HSP 1 Score: 136 bits (342), Expect = 4.380e-35
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQST 393
            +R +DD H+IF+EP V D V + GF +GPGGP YNDRQV+SYHVYC   N  G+P     C++ D      R  +    ++GGMM TEFGA+  +  G+ ++N I G AD  +Q WAYWQFK + D+TTQ++
Sbjct:  281 IRTVDDKHLIFYEPCVFD-VAQTGFTQGPGGPKYNDRQVFSYHVYCLDVNKRGEPKSDLVCDISDTALIEMRVSEAKRKQLGGMMMTEFGALSNSSKGIGEINRITGIADQSLQSWAYWQFKKYQDLTTQAS 411          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A2P6MTS4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MTS4_9EUKA)

HSP 1 Score: 132 bits (333), Expect = 5.200e-34
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMMTEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQSTGE 399
            +R  DD+ IIFFE  V  L    GF  GPGGP YNDRQ ++YH+YC P +  G P+ L ECE +D  ++     D+   K+ G MTEFGA+  N   +  + Y++  AD   Q WAYWQ K +NDITT  +GE
Sbjct:  258 IRMNDDTKIIFFEKAV--LPAASGFRGGPGGPDYNDRQAFAYHIYCGPTSRDGTPSWLNECEALDGFFYDEIDIDLNRTKLAGFMTEFGAVPDNATSMDSIRYLMEAADARAQSWAYWQLKYYNDITTAGSGE 388          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A814NIN1_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814NIN1_9BILA)

HSP 1 Score: 129 bits (323), Expect = 1.580e-33
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITT 384
            +R++DD H+IFFEP   DL +E GF EGPGG  YN+RQV+SYH+YC   N  GDP     CE+ D +   +R  +    K GGMM TEFG +  +  G+ +LN I+  AD  +Q W+YWQFK + D+TT
Sbjct:   83 IRQVDDQHLIFFEPCSFDL-LETGFTEGPGGIEYNNRQVFSYHIYCLDVNKRGDPKSDLICEINDLILMNARIAEARKKKFGGMMLTEFGGLSNSTEGIKELNRIMEFADDQLQSWSYWQFKKYGDLTT 210          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A813PMR2_9BILA (Hypothetical protein n=9 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A813PMR2_9BILA)

HSP 1 Score: 131 bits (329), Expect = 2.880e-33
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQST 393
            +R++DD HIIFFEP V+DL  + G  EGPGG  YNDRQ +SYHVYC      GDP     C++ D L    R  +    K GGMM TEFGA+  +  G+ +++ I G AD F+Q W+YWQFK + D+TT ++
Sbjct:  267 IRQVDDKHIIFFEPCVADL-FQTGLKEGPGGVDYNDRQAFSYHVYCIDVTKQGDPKSDVICDIDDALLIALRYQEAKKKKFGGMMLTEFGALINSTEGIKEIHRITGLADEFLQSWSYWQFKKYQDLTTAAS 397          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A818TYY7_9BILA (Hypothetical protein n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A818TYY7_9BILA)

HSP 1 Score: 131 bits (329), Expect = 2.900e-33
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITT 384
            +R++DD HIIFFEP V+DL  + G  EGPGG  YNDRQ +SYHVYC      GDP     C++ D L    R  +    K GGMM TEFGA+  +  G+ +L+ I G AD F Q W+YWQFK + D+TT
Sbjct:  267 IRQVDDKHIIFFEPCVADL-FQTGLEEGPGGIDYNDRQAFSYHVYCIDVTKQGDPKSDLICDIDDALLISLRYEEAKKKKFGGMMLTEFGAISNSTEGVKELHRITGLADEFFQSWSYWQFKKYQDLTT 394          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A819ELZ6_9BILA (Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819ELZ6_9BILA)

HSP 1 Score: 130 bits (328), Expect = 6.020e-33
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITT 384
            +R++DD HIIFFEP V+DL ++ GF EGPGG  YN+RQ +SYHVYC      GD      C++ D L    R  +    K GGMM TEFGA+  +  G+ +++ I G AD F+Q W+YWQFK + D+TT
Sbjct:  320 IRQVDDKHIIFFEPCVADL-LQTGFKEGPGGVDYNNRQAFSYHVYCINVTKQGDQNSDVVCDIDDALLISLRYEEAKKKKFGGMMLTEFGAVSNSTEGIKEISRITGLADAFLQSWSYWQFKQYQDLTT 447          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A816P638_9BILA (Hypothetical protein n=12 Tax=Rotaria TaxID=231623 RepID=A0A816P638_9BILA)

HSP 1 Score: 129 bits (325), Expect = 1.070e-32
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQST 393
            +R++DD HIIFFEP V+DL ++ G  EGPGG  YNDRQ +SYHVYC      GDP     C++ D L    R  +    K GGMM TEFGA+  +   + +++ I G AD F+Q W+YWQFK + D+TT ++
Sbjct:  267 IRQVDDKHIIFFEPCVADL-LQTGLTEGPGGIDYNDRQAFSYHVYCIDVTKQGDPKSDLICDIDDALLITLRFEEAKKKKFGGMMLTEFGALSNSTESIKEIHRITGIADQFLQSWSYWQFKKYQDLTTAAS 397          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A815IQ01_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A815IQ01_9BILA)

HSP 1 Score: 129 bits (323), Expect = 2.520e-32
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITT 384
            +R++DD H+IFFEP   DL +E GF EGPGG  YN+RQV+SYH+YC   N  GDP     CE+ D +   +R  +    K GGMM TEFG +  +  G+ +LN I+  AD  +Q W+YWQFK + D+TT
Sbjct:  296 IRQVDDQHLIFFEPCSFDL-LETGFTEGPGGIEYNNRQVFSYHIYCLDVNKRGDPKSDLICEINDLILMNARIAEARKKKFGGMMLTEFGGLSNSTEGIKELNRIMEFADDQLQSWSYWQFKKYGDLTT 423          
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Match: A0A813WJZ8_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813WJZ8_ADIRI)

HSP 1 Score: 127 bits (320), Expect = 6.270e-32
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDNYTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMM-TEFGAMEGNDIGLADLNYILGKADGFIQGWAYWQFKSFNDITTQST 393
            +R++DD  IIF+EP V+DL ++ G  +GPGG  YNDRQ +SYH+YC      GDP     C++ D L   SR  +    K GGMM TEFGA+  +  G+ ++  I G AD ++Q W+YWQFK + D+TT ++
Sbjct:  267 IRQVDDKRIIFYEPCVADL-LQTGLEQGPGGVKYNDRQAFSYHIYCIDVTKQGDPKSDLVCDVDDVLAISSRYEEAKKKKFGGMMLTEFGAISNSTEGVTEITRITGIADDYLQSWSYWQFKKYEDLTTAAS 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102286.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4PDZ4_9EUKA1.800e-3647.37Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A813RT94_9BILA4.380e-3547.73Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A2P6MTS4_9EUKA5.200e-3445.86Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A814NIN1_9BILA1.580e-3348.06Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A813PMR2_9BILA2.880e-3347.73Hypothetical protein n=9 Tax=unclassified Rotaria ... [more]
A0A818TYY7_9BILA2.900e-3349.61Hypothetical protein n=6 Tax=Rotaria sordida TaxID... [more]
A0A819ELZ6_9BILA6.020e-3348.06Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 ... [more]
A0A816P638_9BILA1.070e-3246.97Hypothetical protein n=12 Tax=Rotaria TaxID=231623... [more]
A0A815IQ01_9BILA2.520e-3248.06Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A813WJZ8_ADIRI6.270e-3244.70Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102286contigH-fluviatilis_contig102286:30..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score124.0
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog192875.XP_004365401.1
KEGG koko:K05991
EggNOG free text desc.Cellulase (glycosyl hydrolase family 5)
EggNOG OGs29IWV@1,2RS4Q@2759,39YCX@33154
EC3.2.1.123
COG Functional cat.G
CAZyGH5
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102286.516.1prot_H-fluviatilis_contig102286.516.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102286 30..783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.2357352-CDS-H-fluviatilis_contig102286:29..881622929059.2357352-CDS-H-fluviatilis_contig102286:29..88Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 30..88 -
1691135167.1024792-CDS-H-fluviatilis_contig102286:29..881691135167.1024792-CDS-H-fluviatilis_contig102286:29..88Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 30..88 -
1622929059.2511277-CDS-H-fluviatilis_contig102286:178..2801622929059.2511277-CDS-H-fluviatilis_contig102286:178..280Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 179..280 -
1691135167.1183808-CDS-H-fluviatilis_contig102286:178..2801691135167.1183808-CDS-H-fluviatilis_contig102286:178..280Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 179..280 -
1622929059.269034-CDS-H-fluviatilis_contig102286:415..5431622929059.269034-CDS-H-fluviatilis_contig102286:415..543Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 416..543 -
1691135167.1281424-CDS-H-fluviatilis_contig102286:415..5431691135167.1281424-CDS-H-fluviatilis_contig102286:415..543Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 416..543 -
1622929059.2821026-CDS-H-fluviatilis_contig102286:673..7831622929059.2821026-CDS-H-fluviatilis_contig102286:673..783Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 674..783 -
1691135167.1351662-CDS-H-fluviatilis_contig102286:673..7831691135167.1351662-CDS-H-fluviatilis_contig102286:673..783Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102286 674..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102286.516.1

>prot_H-fluviatilis_contig102286.516.1 ID=prot_H-fluviatilis_contig102286.516.1|Name=mRNA_H-fluviatilis_contig102286.516.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=133bp
LREIDDSHIIFFEPTVSDLVIECGFHEGPGGPAYNDRQVYSYHVYCAPDN
YTGDPTLLKECELVDDLYFFSRTHDMTHMKVGGMMTEFGAMEGNDIGLAD
LNYILGKADGFIQGWAYWQFKSFNDITTQSTGE
back to top

mRNA from alignment at H-fluviatilis_contig102286:30..783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102286.516.1 ID=mRNA_H-fluviatilis_contig102286.516.1|Name=mRNA_H-fluviatilis_contig102286.516.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=754bp|location=Sequence derived from alignment at H-fluviatilis_contig102286:30..783- (Heribaudiella fluviatilis SAG_13_90)
CTCAGGGAAATCGATGACTCGCACATCATCTTCTTTGAGCCAACGGTGTC GGACCTGGTGATCGAGTGTGGCTTTCATGAGGGACCCGGGGGTCCGGCCT ACAATGACCGGTGAGCGATTTTCTCGTCGTTCGTGTTTGCGTTGTTTTGG TGCACCTTTGTTGTTGGTCAACGTCTGTGTGTGTTTGTGTGTATGTGCTG TGACGGTTGGGTTGCGTTTGCGGTGTGCGCGGGTCTCCAGGCAAGTTTAC TCGTACCATGTCTACTGCGCGCCCGACAACTACACGGGTGACCCCACGCT GCTCAAGGAGTGCGAGCTGGTGGACGACCTGTACTTCTTCTCGCGCACCC ACGACATGACGCACATGAGTAAGCGACCACCCAGCGTTCAGCGTGTGTGT TGTTTTCCCTGATTTGACGTTTGTTTCCCAGCTTTCGATTCTCTACCCCT TCCTCTCTGTTGTAGCCGTTTGTGCCGTTGTGAGGAGGTCCTGCTTGATA CAGAGGTCGGCGGGATGATGACCGAGTTTGGGGCAATGGAGGGTAACGAC ATTGGGCTGGCGGACCTGAACTACATTCTGGGCAAGGCGGATGGCTTCAT CCAAGGTAGAGAGGAGTAGGGTGCGGATGCGAATGAATGACTTGAGTGAC TGAGTTCCGATTGCGTGCTTTGCTTACCAATATCGTTTTTGCCAGGCTGG GCGTACTGGCAATTCAAGAGTTTCAATGACATCACTACACAGTCCACGGG TGAG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig102286:30..783-

>mRNA_H-fluviatilis_contig102286.516.1 ID=mRNA_H-fluviatilis_contig102286.516.1|Name=mRNA_H-fluviatilis_contig102286.516.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=798bp|location=Sequence derived from alignment at H-fluviatilis_contig102286:30..783- (Heribaudiella fluviatilis SAG_13_90)
CTCAGGGAAATCGATGACTCGCACATCATCTTCTTTGAGCCAACGGTGTC
GGACCTGGTGATCGAGTGTGGCTTTCATGAGGGACCCGGGGGTCCGGCCT
ACAATGACCGCTCAGGGAAATCGATGACTCGCACATCATCTTCTTTGAGC
CAACGGTGTCGGACCTGGTGATCGAGTGTGGCTTTCATGAGGGACCCGGG
GGTCCGGCCTACAATGACCGGCAAGTTTACTCGTACCATGTCTACTGCGC
GCCCGACAACTACACGGGTGACCCCACGCTGCTCAAGGAGTGCGAGCTGG
TGGACGACCTGTACTTCTTCTCGCGCACCCACGACATGACGCACATGAGC
AAGTTTACTCGTACCATGTCTACTGCGCGCCCGACAACTACACGGGTGAC
CCCACGCTGCTCAAGGAGTGCGAGCTGGTGGACGACCTGTACTTCTTCTC
GCGCACCCACGACATGACGCACATGAAGGTCGGCGGGATGATGACCGAGT
TTGGGGCAATGGAGGGTAACGACATTGGGCTGGCGGACCTGAACTACATT
CTGGGCAAGGCGGATGGCTTCATCCAAGAGGTCGGCGGGATGATGACCGA
GTTTGGGGCAATGGAGGGTAACGACATTGGGCTGGCGGACCTGAACTACA
TTCTGGGCAAGGCGGATGGCTTCATCCAAGGCTGGGCGTACTGGCAATTC
AAGAGTTTCAATGACATCACTACACAGTCCACGGGTGAGGCTGGGCGTAC
TGGCAATTCAAGAGTTTCAATGACATCACTACACAGTCCACGGGTGAG
back to top