mRNA_H-fluviatilis_contig10220.509.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10220.509.1
Unique NamemRNA_H-fluviatilis_contig10220.509.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: D7FNU1_ECTSI (CG-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU1_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.890e-34
Identity = 63/84 (75.00%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 TDLESELNALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLT 252
            TDLESELNALD++GFSVLHYTCLH+L AL+PVL++RGADVNLRTGDG+ QTPLHLAA  G++ IVQEL+K+GA +DA D+ GLT
Sbjct: 1089 TDLESELNALDSRGFSVLHYTCLHNLGALVPVLVERGADVNLRTGDGKKQTPLHLAARGGSIGIVQELVKQGAMVDAADSDGLT 1172          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A6H5KVR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.900e-34
Identity = 63/84 (75.00%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 TDLESELNALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLT 252
            TDLESELNALD++GFSVLHYTCLH+L AL+PVL++RGADVNLRTGDG+ QTPLHLAA  G++ IVQEL+K+GA +DA D+ GLT
Sbjct: 1082 TDLESELNALDSRGFSVLHYTCLHNLGALVPVLVERGADVNLRTGDGKKQTPLHLAARGGSIGIVQELVKQGAMVDAADSDGLT 1165          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A2G8KLY7_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KLY7_STIJA)

HSP 1 Score: 68.2 bits (165), Expect = 5.110e-12
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   22 NALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLT 252
            NALDT G++ LHY C ++   +  +LL  GAD+N+ T  G   +PLH AAY G++++ + L+ +GAN    D  G T
Sbjct:   54 NALDTSGYTALHYACRNNNEDIATLLLSHGADINITTRSG-GASPLHRAAYMGHVRLTKFLLNKGANPSLQDTDGKT 129          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A851Z329_9AVES (PP16A phosphatase (Fragment) n=1 Tax=Halcyon senegalensis TaxID=342381 RepID=A0A851Z329_9AVES)

HSP 1 Score: 69.3 bits (168), Expect = 7.510e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   40 GFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD 261
            G + LH  C+ +  A++PVLLD GADVN R  D    TPLH AA  G+LQ+VQ L+ RGA++ A+++ G  P D
Sbjct:  103 GLTALHQCCIDAAGAVVPVLLDAGADVNAR--DSELWTPLHAAATCGHLQLVQLLIHRGADLLAINSDGNMPYD 174          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A7K9BWS8_9PICI (PP16A phosphatase (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K9BWS8_9PICI)

HSP 1 Score: 67.0 bits (162), Expect = 4.570e-11
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   40 GFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD 261
            G + LH  C+    A++PVLLD GADVN R  D    TPLH AA  G+L++VQ L++RGA++ A ++ G  P D
Sbjct:  104 GLTALHQCCIDDAGAVVPVLLDAGADVNAR--DSELWTPLHAAATCGHLRLVQLLIQRGADLLATNSDGNMPYD 175          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A7K8XUA0_9PICI (PP16A phosphatase (Fragment) n=2 Tax=Ramphastidae TaxID=57381 RepID=A0A7K8XUA0_9PICI)

HSP 1 Score: 67.0 bits (162), Expect = 4.880e-11
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   40 GFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD 261
            G + LH  C+    A++PVLLD GADVN R  D    TPLH AA  G+L++VQ L++RGA++ A ++ G  P D
Sbjct:  104 GLTALHQCCIDDAGAVVPVLLDAGADVNAR--DSELWTPLHAAATCGHLRLVQLLIQRGADLLATNSDGNMPYD 175          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A7M7JIG7_VARDE (Non-specific serine/threonine protein kinase n=5 Tax=Varroa TaxID=62624 RepID=A0A7M7JIG7_VARDE)

HSP 1 Score: 66.2 bits (160), Expect = 9.630e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   16 ELNALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDG-RDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD 261
            ELN  D+ G + L   C ++  A   +LL  G + N+  G+  R +TPLHLAA A NL++VQ LM+ GA+++A D  G TP D
Sbjct:   41 ELNTPDSSGRTALFDACTNADPACARILLQAGGNPNVAAGEKERGRTPLHLAAEASNLEVVQLLMQHGADINARDCDGFTPFD 123          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: A0A663N2P7_ATHCN (Protein phosphatase 1 regulatory subunit 16A n=3 Tax=Strigidae TaxID=30459 RepID=A0A663N2P7_ATHCN)

HSP 1 Score: 63.9 bits (154), Expect = 5.890e-10
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   40 GFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD 261
            G + LH  C+     ++ VLL+ GADVN R  D    TPLH AA  G+L++VQ L++RGAN+ AV++ G  P D
Sbjct:  104 GLTALHQCCIDDYGDVVTVLLEAGADVNAR--DSELWTPLHAAATCGHLRLVQLLIRRGANLLAVNSDGNMPYD 175          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: UPI0018859B1E (protein phosphatase 1 regulatory subunit 16A-like isoform X1 n=3 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018859B1E)

HSP 1 Score: 63.9 bits (154), Expect = 6.000e-10
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   22 NALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQG 246
            N+ +  G + LH  C+    A++ +LLD GA+V+ +  D    TPLH AA  G+L +V++L++RGAN+ AV+A G
Sbjct:  102 NSTNEDGLTALHQCCIDDSEAMMALLLDHGANVDAK--DSERWTPLHAAATCGHLHLVKQLVERGANLLAVNADG 174          
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Match: UPI00159C93BF (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X1 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI00159C93BF)

HSP 1 Score: 63.9 bits (154), Expect = 6.150e-10
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 TDLESELNALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNL-RTGDGRDQTPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTP 255
            T   ++++A D  G + LH +C +     + ++L++  D +L    +   QTPLHLAA +G  Q VQEL+ RGAN+  VD  GLTP
Sbjct:  905 TGASAKISATDKDGNTALHLSCSNGKEDCVMLILEKLTDTSLINATNAALQTPLHLAARSGLKQAVQELLSRGANVQTVDENGLTP 990          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10220.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU1_ECTSI2.890e-3475.00CG-1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVR6_9PHAE2.900e-3475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G8KLY7_STIJA5.110e-1241.56Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A851Z329_9AVES7.510e-1248.65PP16A phosphatase (Fragment) n=1 Tax=Halcyon seneg... [more]
A0A7K9BWS8_9PICI4.570e-1147.30PP16A phosphatase (Fragment) n=4 Tax=Neognathae Ta... [more]
A0A7K8XUA0_9PICI4.880e-1147.30PP16A phosphatase (Fragment) n=2 Tax=Ramphastidae ... [more]
A0A7M7JIG7_VARDE9.630e-1143.37Non-specific serine/threonine protein kinase n=5 T... [more]
A0A663N2P7_ATHCN5.890e-1045.95Protein phosphatase 1 regulatory subunit 16A n=3 T... [more]
UPI0018859B1E6.000e-1041.33protein phosphatase 1 regulatory subunit 16A-like ... [more]
UPI00159C93BF6.150e-1039.53serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10220contigH-fluviatilis_contig10220:6818..7527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D7FNU1
KEGG koko:K17458
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.728266-CDS-H-fluviatilis_contig10220:6817..69281622929058.728266-CDS-H-fluviatilis_contig10220:6817..6928Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10220 6818..6928 -
1691135166.898589-CDS-H-fluviatilis_contig10220:6817..69281691135166.898589-CDS-H-fluviatilis_contig10220:6817..6928Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10220 6818..6928 -
1622929058.7481687-CDS-H-fluviatilis_contig10220:7377..75271622929058.7481687-CDS-H-fluviatilis_contig10220:7377..7527Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10220 7378..7527 -
1691135166.909008-CDS-H-fluviatilis_contig10220:7377..75271691135166.909008-CDS-H-fluviatilis_contig10220:7377..7527Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10220 7378..7527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10220.509.1prot_H-fluviatilis_contig10220.509.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10220 6818..7527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10220.509.1

>prot_H-fluviatilis_contig10220.509.1 ID=prot_H-fluviatilis_contig10220.509.1|Name=mRNA_H-fluviatilis_contig10220.509.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=87bp
TDLESELNALDTQGFSVLHYTCLHSLSALLPVLLDRGADVNLRTGDGRDQ
TPLHLAAYAGNLQIVQELMKRGANMDAVDAQGLTPGD
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mRNA from alignment at H-fluviatilis_contig10220:6818..7527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10220.509.1 ID=mRNA_H-fluviatilis_contig10220.509.1|Name=mRNA_H-fluviatilis_contig10220.509.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=710bp|location=Sequence derived from alignment at H-fluviatilis_contig10220:6818..7527- (Heribaudiella fluviatilis SAG_13_90)
ACCGATCTTGAATCCGAGCTGAACGCCCTCGACACTCAAGGCTTCAGCGT TCTTCACTACACGTGTCTGCACAGCCTGAGCGCGCTTTTACCTGTTCTGC TGGACAGAGGCGCAGATGTCAACCTTCGAACGGGGGATGGTCGAGATCAG GTTAGCCAGGATAATTGATCAGTACACAGTGGTCGCGATGTCGCGACGGA ACGGCTGTCTCGCTCAAATATTTGCTCCCTGCCTGTTGCACACAAGTGCT GCCAACGTGATTATTGAAAGCCGGCCGCGGGTAGTTGATTCTGCGCTTCG TAGCGGCTTCTGTTGTGGCGTGCGAATATTGCAGATGGCAAATCGATGGC AACAGCGTCTCTTCGTATCACTGGTCGTCCACCATAATCAGGCCATCACT CACCGTTACTCATAACGTTTTTTCGTTGGATAATGACTTCCCTCCGCTTG TGGCCATGTTGTGTGAATTGTTTGTTTCCACGGTCTGTAGAAGTCAACCA TTTATGCGTGCCAACAACCACTTTGTGACTACGCATCGCGCGTTCTTTTT GATGTTTTTGTGGTGTATCGATGTGTCCACTCGTTTCATTTCTTCGCAGA CGCCGCTGCACCTGGCGGCGTATGCTGGAAATCTTCAGATCGTACAAGAG CTGATGAAGAGGGGGGCCAATATGGACGCCGTGGACGCCCAAGGACTAAC TCCAGGTGAT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10220:6818..7527-

>mRNA_H-fluviatilis_contig10220.509.1 ID=mRNA_H-fluviatilis_contig10220.509.1|Name=mRNA_H-fluviatilis_contig10220.509.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=522bp|location=Sequence derived from alignment at H-fluviatilis_contig10220:6818..7527- (Heribaudiella fluviatilis SAG_13_90)
ACCGATCTTGAATCCGAGCTGAACGCCCTCGACACTCAAGGCTTCAGCGT
TCTTCACTACACGTGTCTGCACAGCCTGAGCGCGCTTTTACCTGTTCTGC
TGGACAGAGGCGCAGATGTCAACCTTCGAACGGGGGATGGTCGAGATCAG
ACCGATCTTGAATCCGAGCTGAACGCCCTCGACACTCAAGGCTTCAGCGT
TCTTCACTACACGTGTCTGCACAGCCTGAGCGCGCTTTTACCTGTTCTGC
TGGACAGAGGCGCAGATGTCAACCTTCGAACGGGGGATGGTCGAGATCAG
ACGCCGCTGCACCTGGCGGCGTATGCTGGAAATCTTCAGATCGTACAAGA
GCTGATGAAGAGGGGGGCCAATATGGACGCCGTGGACGCCCAAGGACTAA
CTCCAGGTGATACGCCGCTGCACCTGGCGGCGTATGCTGGAAATCTTCAG
ATCGTACAAGAGCTGATGAAGAGGGGGGCCAATATGGACGCCGTGGACGC
CCAAGGACTAACTCCAGGTGAT
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