mRNA_H-fluviatilis_contig10217.502.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10217.502.1
Unique NamemRNA_H-fluviatilis_contig10217.502.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.850e-53
Identity = 107/250 (42.80%), Postives = 148/250 (59.20%), Query Frame = 1
Query:   10 ASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDIT---------------VLERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGT-RTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            A+C+G  D+LQG+W + L   A E FTM+   GL++P RVPQGVLNAT +++ +M   +L  L    C+VWV DI                +L R     +  AAHK TF+ TS++WCGK+YS   ++H  +R+ GL  LRRPE  GEL+QF+Q  NW+RTSL  M+++ AP+RE LE  + G    T+R+A+++ I  + WT      W+ A  M+ NA  L +P     VLMFPD SD   GSF  QV
Sbjct:  745 ATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMN-SILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQV 990          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.900e-51
Identity = 109/250 (43.60%), Postives = 146/250 (58.40%), Query Frame = 1
Query:   10 ASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDIT---------------VLERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRT-TRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            A  +G  D+LQ +W   L   A E FT+ T  GL+TP RVPQG+LNAT +F+A++   +L GL    C VWV D+                +L+RL    +  AAHK TFF TSI WCGK+YS+  V+H  ER+ GL  +RRPE  GEL+QF+Q  NW+RTSL  MA+V  P+R  LE+ L G ++ T+R+A ++ I  +  T      W AA  ++  A  L++P     VLMFPD SD   GSF  QV
Sbjct:  843 AKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLT-RILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQV 1088          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6A4F4L9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4F4L9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.220e-37
Identity = 86/246 (34.96%), Postives = 132/246 (53.66%), Query Frame = 1
Query:   19 FGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDI-----TVLERLITRE--ISTAAH--------KVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            +G FD ++GFW L L  ++ E  +  T EG+FTP RVPQG  +A  HF A+ME +    L+++  L+W+ D+     T+ E L   E    T AH        K   +  S+ WCGKI S+ G+ H   RI+ L+ +  P   GEL QF+  +NWMR SL+D A+   P+++ L+  L+G R T+R+AA   ++  +        +D   ++L N+  LA+PK      +F D SD+   +   QV
Sbjct:   73 YGLFDFIKGFWQLPLAESSQEMLSYATDEGVFTPTRVPQGSCDAALHFPATME-KCFAELVYKSLLIWIDDLLLFADTIEEYLAALETLFDTMAHYGLKFSVMKTCLYQQSVTWCGKIISENGMTHDPRRIDALLNMPPPSTAGELQQFICASNWMRDSLIDYARTIQPLQQCLDRGLEGKRKTKRVAAGIALQLNE---SELVSFDNVKKLLANSSTLAHPKDNATFALFCDASDVGWSAILTQV 314          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A225VK89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VK89_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.230e-36
Identity = 89/250 (35.60%), Postives = 132/250 (52.80%), Query Frame = 1
Query:    7 GASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDI---------------TVLERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            G   +  FD L+GFW L LD +  E  + MT +G+FTP RVPQG  +A  HF+A++E+ VL  L+ +  +VW+ D+                VL +L    +     K + FLT + WCG+I + +G+ H  ERI+ L  +  P    EL QF+  +NWMR  LVD A+V  P++E L++ L GT+ T+R AA   I     T      ++A   +L ++  LAYP  E ++ +  D SD   G    QV
Sbjct:  656 GKMFYALFDFLKGFWQLPLDESCREYLSYMTDKGIFTPTRVPQGSTDAALHFQATVEM-VLGDLVNKNVIVWIDDLLVFADSAHELLDVIKAVLTKLDEFGLLLNPKKSSLFLTEVRWCGRIINRQGIGHDPERIKALQDMPAPTTAAELQQFLCASNWMRAGLVDYARVARPLQEKLDDALSGTKKTKRAAAGVQI---TLTDSELKSFEAVKELLGHSAMLAYPDPEKQLCLLSDASDYGWGLVVSQV 901          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A2P4XAX7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XAX7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.180e-36
Identity = 78/224 (34.82%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   19 FGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDITVLERLITREI---STAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESD 681
            +G FD ++GFW L L   + E  +  T EG+FTP RVPQG  ++  HF+A+ME +    L++   L+W+ D+ V    I   +   + +A K   +  S+ WCG++ S  GV +  +RI+ L  +  P     L QF+  +NWMR SL+D A++T P++  L++ L   R T+RIAA  VI+ +D        +    +++ NA +L+YP  E  + +F D SD
Sbjct:  142 YGLFDFIKGFWQLPLTKNSQEILSYATDEGIFTPTRVPQGSCDSALHFQATME-KCFANLLYESLLIWIDDLLVFTNSIDEYLEGLNFSAAKTRLYQQSVTWCGRVISPNGVSYDPKRIDTLANMPVPTTAAGLQQFICASNWMRDSLLDYAKITQPLQTKLDKALDRKRKTKRIAAGVVIKLDD---SEVDSFSKVKQLIANATKLSYPSNEATMRLFCDASD 361          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6A4C6S8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4C6S8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.500e-35
Identity = 85/239 (35.56%), Postives = 127/239 (53.14%), Query Frame = 1
Query:    7 GASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDITVLER---------------LITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDES 678
            G+  FG FD  +GFW + L   + E F+ +T++G+FTP RVPQG  ++  HF+A M  +VL  L+FR   VW+ D+ +  R               L  R++   A K   F   ++WCGK+   EGV+H  ER+  L ++  P  G  L  F+   NW+R S+VD A+ TAP++E LE  +Q +R  R+   S VI E  W+      +     M++ + +LA+P K   V MF D S
Sbjct:  263 GSYGFGAFDFHKGFWQMPLHPNSREIFSFVTEDGVFTPTRVPQGASDSAVHFQAQMN-DVLKDLLFRSVFVWIDDVLLYARTAGEYLENLSAFFAILRQRKLKLNARKCKLFAKRVKWCGKVIDGEGVEHDPERLAALQQMPLPPTGAALQHFLCAFNWLRDSMVDYARTTAPLQEKLERVMQ-SRGCRKAQLSGVILE--WSDDEADAFRKTLEMVERSCKLAFPDKGATVCMFSDAS 497          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6A3UVY4_9STRA (RNA-directed DNA polymerase n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UVY4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.150e-34
Identity = 84/241 (34.85%), Postives = 128/241 (53.11%), Query Frame = 1
Query:    7 GASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDITV-----------LERLIT----REISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQ--GTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDES 678
            GA  FG FD  +GFW + L   + E F+ +T++G+FTP RVPQG  ++  HF+A M  ++L  L+FR  LVW+ D+ +           LE+  +    R++   A K   F   +EWCGK+   EGV+H  ER+  L  +  P  G  L  F+   NW+R S+VD A+ TAP++E LE+ ++  G R  +   AS      +W+    A +     M++ + +L +P K   V MF D S
Sbjct:  625 GAYGFGAFDFHKGFWQMPLHPNSQEMFSFVTEDGVFTPTRVPQGASDSAVHFQAQMN-DILKDLLFRSVLVWIDDVLLFAQSAGAYLKNLEQFFSILRQRKLKLNAKKCKLFAKRVEWCGKLIDGEGVEHNPERLAALRPMPLPPTGAALQHFLCALNWLRDSMVDYARTTAPLQEKLEQVMRARGRRKAQLSGASL-----EWSDGEAAAYRETLAMVERSCKLVFPDKAATVCMFTDAS 859          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A225WF48_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WF48_9STRA)

HSP 1 Score: 141 bits (355), Expect = 7.890e-34
Identity = 87/244 (35.66%), Postives = 131/244 (53.69%), Query Frame = 1
Query:    1 AGGASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDI--------TVLERLITREI---------STAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESD 681
            A G   FG FD L+GFW L L     E  + MT   +FTP RVPQG  +A  HF+ +ME +   GL++   L+W+ D+        T L+++  +E+           +  K + + TS++WCGK+ S++G+ H  ERI  L  +  P   GEL QF+  ANWMR SLVD A+  AP++  L+  L   + T+R+AA   I+ E    +RQ  ++A   ML ++  LA+P  +    +  D SD
Sbjct:  622 AKGMKHFGLFDFLKGFWQLPLAEWCQEILSYMTDAKIFTPRRVPQGCSDAAIHFQQTME-KCFAGLLYEHLLIWIDDLLLFAADIETYLQKM--QELFGLINDFGLKLSVKKSSLYQTSVKWCGKVVSEDGIAHDPERIACLRSMPEPTNAGELQQFLCAANWMRESLVDYARTVAPLQTRLDTALASGKRTKRVAAG--IKIELTCDERQT-FEAVKEMLGHSATLAFPDNDAVTCLLTDASD 859          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6A3SZ70_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3SZ70_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.750e-33
Identity = 85/250 (34.00%), Postives = 126/250 (50.40%), Query Frame = 1
Query:    7 GASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDI---------------TVLERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            G   +  FD ++ FW L L  A  E  + MT  G+FTP RVPQG  +A  HF++++E EVL   +    L+W+ D+                +L+RL          K   F T I+WCG++ + +GV H  ERI+ L K+  P    EL +F+   NWMR  LVD A+V  P++E L+E L+GT+ ++R AA   I     +    A ++A   +L N+  L YP    ++ +  D SD   G    QV
Sbjct:  572 GKEFYAIFDFIKCFWQLPLHKAYQEILSYMTDRGIFTPTRVPQGCTDAALHFQSTVE-EVLKEYLQECVLLWIDDLLAYANTVVELMDVIEAILKRLDEYGFKLNPRKCKLFQTEIKWCGRVINKDGVGHDPERIQALQKIPPPSTAAELQEFVCATNWMREGLVDYARVVKPLQERLDESLRGTKRSKRAAAGIRI---SLSHSELASFEAVKELLSNSAMLTYPDPSKQLCLLSDASDSGWGLIVSQV 817          
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Match: A0A6A3XJV5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XJV5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.960e-33
Identity = 85/250 (34.00%), Postives = 126/250 (50.40%), Query Frame = 1
Query:    7 GASCFGPFDILQGFW*LLLDAAACEAFTMMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDI---------------TVLERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRRPEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAASKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFSGSF*RQV 711
            G   +  FD ++ FW L L  A  E  + MT  G+FTP RVPQG  +A  HF++++E EVL   +    L+W+ D+                +L+RL          K   F T I+WCG++ + +GV H  ERI+ L K+  P    EL +F+   NWMR  LVD A+V  P++E L+E L+GT+ ++R AA   I     +    A ++A   +L N+  L YP    ++ +  D SD   G    QV
Sbjct:  572 GKEFYAIFDFIKCFWQLPLHKAYQEILSYMTDRGIFTPTRVPQGCTDAALHFQSTVE-EVLKEYLQECVLLWIDDLLAYANTVVELMDVIEAILKRLDEYGFKLNPRKCKLFQTEIKWCGRVINKDGVGHDPERIQALQKIPPPSTAAELQEFVCATNWMREGLVDYARVVKPLQERLDESLRGTKRSKRAAAGIRI---SLSHSELASFEAVKELLSNSAMLTYPDPSKQLCLLSDASDSGWGLIVSQV 817          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10217.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.850e-5342.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.900e-5143.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4F4L9_9STRA4.220e-3734.96Reverse transcriptase domain-containing protein n=... [more]
A0A225VK89_9STRA3.230e-3635.60Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4XAX7_9STRA9.180e-3634.82Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A4C6S8_9STRA3.500e-3535.56Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A6A3UVY4_9STRA3.150e-3434.85RNA-directed DNA polymerase n=4 Tax=Phytophthora f... [more]
A0A225WF48_9STRA7.890e-3435.66RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6A3SZ70_9STRA1.750e-3334.00Reverse transcriptase domain-containing protein n=... [more]
A0A6A3XJV5_9STRA1.960e-3334.00Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10217contigH-fluviatilis_contig10217:7147..8099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog67593.Physo127601
EggNOG free text desc.zinc finger
EggNOG OGs2QT1S@2759,3QI5A@4776,COG2801@1
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size908
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10217.502.1prot_H-fluviatilis_contig10217.502.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10217 7237..7893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.1481826-UTR-H-fluviatilis_contig10217:7146..72361622929058.1481826-UTR-H-fluviatilis_contig10217:7146..7236Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10217 7147..7236 +
1691135166.62851-UTR-H-fluviatilis_contig10217:7146..72361691135166.62851-UTR-H-fluviatilis_contig10217:7146..7236Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10217 7147..7236 +
1622929058.2030702-UTR-H-fluviatilis_contig10217:7893..80991622929058.2030702-UTR-H-fluviatilis_contig10217:7893..8099Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10217 7894..8099 +
1691135166.6586285-UTR-H-fluviatilis_contig10217:7893..80991691135166.6586285-UTR-H-fluviatilis_contig10217:7893..8099Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10217 7894..8099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.1604152-CDS-H-fluviatilis_contig10217:7236..73831622929058.1604152-CDS-H-fluviatilis_contig10217:7236..7383Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10217 7237..7383 +
1691135166.6388028-CDS-H-fluviatilis_contig10217:7236..73831691135166.6388028-CDS-H-fluviatilis_contig10217:7236..7383Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10217 7237..7383 +
1622929058.186346-CDS-H-fluviatilis_contig10217:7428..78931622929058.186346-CDS-H-fluviatilis_contig10217:7428..7893Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10217 7429..7893 +
1691135166.6489847-CDS-H-fluviatilis_contig10217:7428..78931691135166.6489847-CDS-H-fluviatilis_contig10217:7428..7893Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10217 7429..7893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10217.502.1

>prot_H-fluviatilis_contig10217.502.1 ID=prot_H-fluviatilis_contig10217.502.1|Name=mRNA_H-fluviatilis_contig10217.502.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=204bp
MMTQEGLFTPLRVPQGVLNATPHFEASMELEVLVGLIFRICLVWVGDITV
LERLITREISTAAHKVTFFLTSIEWCGKIYSDEGVKHATERIEGLVKLRR
PEKGGELLQFMQVANWMRTSLVDMAQVTAPMRELLEEFLQGTRTTRRIAA
SKVIREEDWTGQRQALWDAAPRMLKNAEELAYPKKEWKVLMFPDESDLFS
GSF*
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mRNA from alignment at H-fluviatilis_contig10217:7147..8099+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10217.502.1 ID=mRNA_H-fluviatilis_contig10217.502.1|Name=mRNA_H-fluviatilis_contig10217.502.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=953bp|location=Sequence derived from alignment at H-fluviatilis_contig10217:7147..8099+ (Heribaudiella fluviatilis SAG_13_90)
GCTGGGGGTGCTTCCTGCTTTGGTCCATTTGACATTCTGCAGGGTTTTTG GTAGTTGCTGCTGGATGCTGCCGCGTGCGAGGCATTTACCATGATGACGC AGGAGGGACTTTTTACCCCGCTTCGTGTGCCGCAAGGAGTGCTAAACGCG ACGCCCCATTTCGAAGCAAGCATGGAGCTCGAGGTGCTGGTTGGCCTGAT CTTTCGGATATGTTTGGTGTGGGTGGGTGACATCACTGTGTAGGGACGCA CGTCAGAGGAGCTGGTGGTGAACACGGGGTAGGTGTTAGAGCGGCTTATT ACGAGGGAAATATCCACCGCGGCACACAAGGTGACATTTTTCTTGACTTC CATAGAGTGGTGTGGTAAAATTTACTCGGACGAGGGAGTGAAGCACGCGA CGGAGCGCATCGAGGGACTGGTGAAGTTGCGCCGGCCGGAAAAGGGGGGA GAGTTGCTGCAGTTCATGCAAGTGGCAAACTGGATGCGGACGTCCCTGGT CGACATGGCGCAGGTGACGGCGCCAATGAGGGAGCTGTTGGAGGAATTTT TGCAGGGAACGCGTACAACGAGGAGGATTGCGGCCAGCAAAGTGATACGT GAGGAAGATTGGACGGGGCAGCGGCAAGCGTTGTGGGATGCGGCTCCGCG CATGCTGAAGAATGCCGAGGAGCTGGCATATCCCAAAAAGGAGTGGAAGG TGCTGATGTTCCCGGACGAGAGCGACCTTTTTTCGGGGAGTTTCTGACGC CAGGTTTGCAAGTTGAGGATATATGTCATGAACCTGTGGGGATTCTGAGC GGAGCGTTCACGGGGTCGCAGCTACGGTGGCCGACGATGGATAAGGAAGC CTTTGCTATAGTGAGCACTTTCAGGCGTTTGGAGTATTTACCATGGGGTG GAGTTTCTATCTACTGCGATCATCGGAATCTGGCGTACATTTTCAGGCCG GAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10217:7147..8099+

>mRNA_H-fluviatilis_contig10217.502.1 ID=mRNA_H-fluviatilis_contig10217.502.1|Name=mRNA_H-fluviatilis_contig10217.502.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1224bp|location=Sequence derived from alignment at H-fluviatilis_contig10217:7147..8099+ (Heribaudiella fluviatilis SAG_13_90)
ATGATGACGCAGGAGGGACTTTTTACCCCGCTTCGTGTGCCGCAAGGAGT
GCTAAACGCGACGCCCCATTTCGAAGCAAGCATGGAGCTCGAGGTGCTGG
TTGGCCTGATCTTTCGGATATGTTTGGTGTGGGTGGGTGACATCACTATG
ATGACGCAGGAGGGACTTTTTACCCCGCTTCGTGTGCCGCAAGGAGTGCT
AAACGCGACGCCCCATTTCGAAGCAAGCATGGAGCTCGAGGTGCTGGTTG
GCCTGATCTTTCGGATATGTTTGGTGTGGGTGGGTGACATCACTGTGTTA
GAGCGGCTTATTACGAGGGAAATATCCACCGCGGCACACAAGGTGACATT
TTTCTTGACTTCCATAGAGTGGTGTGGTAAAATTTACTCGGACGAGGGAG
TGAAGCACGCGACGGAGCGCATCGAGGGACTGGTGAAGTTGCGCCGGCCG
GAAAAGGGGGGAGAGTTGCTGCAGTTCATGCAAGTGGCAAACTGGATGCG
GACGTCCCTGGTCGACATGGCGCAGGTGACGGCGCCAATGAGGGAGCTGT
TGGAGGAATTTTTGCAGGGAACGCGTACAACGAGGAGGATTGCGGCCAGC
AAAGTGATACGTGAGGAAGATTGGACGGGGCAGCGGCAAGCGTTGTGGGA
TGCGGCTCCGCGCATGCTGAAGAATGCCGAGGAGCTGGCATATCCCAAAA
AGGAGTGGAAGGTGCTGATGTTCCCGGACGAGAGCGACCTTTTTTCGGGG
AGTTTCTGAGTGTTAGAGCGGCTTATTACGAGGGAAATATCCACCGCGGC
ACACAAGGTGACATTTTTCTTGACTTCCATAGAGTGGTGTGGTAAAATTT
ACTCGGACGAGGGAGTGAAGCACGCGACGGAGCGCATCGAGGGACTGGTG
AAGTTGCGCCGGCCGGAAAAGGGGGGAGAGTTGCTGCAGTTCATGCAAGT
GGCAAACTGGATGCGGACGTCCCTGGTCGACATGGCGCAGGTGACGGCGC
CAATGAGGGAGCTGTTGGAGGAATTTTTGCAGGGAACGCGTACAACGAGG
AGGATTGCGGCCAGCAAAGTGATACGTGAGGAAGATTGGACGGGGCAGCG
GCAAGCGTTGTGGGATGCGGCTCCGCGCATGCTGAAGAATGCCGAGGAGC
TGGCATATCCCAAAAAGGAGTGGAAGGTGCTGATGTTCCCGGACGAGAGC
GACCTTTTTTCGGGGAGTTTCTGA
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