mRNA_H-fluviatilis_contig102167.501.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102167.501.1
Unique NamemRNA_H-fluviatilis_contig102167.501.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-21
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    DG K + +KW ++WKT+E GLIVD KAR+ A+GFS+I G ++  + + +PS ASI++ IAVA
Sbjct:    3 YKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVA 101
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.320e-20
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++    +  PS ASI++ IAVA
Sbjct:  125 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5KGD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  + +  PS ASI++ IAVA
Sbjct:  154 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARIVARGFSQIPGTDFHHSSSACPSAASIKTVIAVA 252
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.250e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  + +  PS ASI++ IAVA
Sbjct:  111 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVA 209
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.330e-19
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFDVHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVAC 297
            Y EA    +  +W    +KEF  L+  GTF+      GT  + AKW Y+WK DE G  V AKARL A+GF+Q EG ++ ETF+P PS+ SIR   A+AC
Sbjct: 1254 YGEAHAGPHHHIWTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIAC 1348
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.330e-19
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFDVHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVAC 297
            Y EA    +  +W    +KEF  L+  GTF+      GT  + AKW Y+WK DE G  V AKARL A+GF+Q EG ++ ETF+P PS+ SIR   A+AC
Sbjct: 1372 YGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIAC 1467
[Close]
BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.740e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+ +  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  +F+  PS ASI++ IAVA
Sbjct:  111 YKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVA 209
[Close]
BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.060e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  + +  PS ASI++ IAVA
Sbjct:  461 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVA 559
[Close]
BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.130e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  + +  PS ASI++ IAVA
Sbjct:  651 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVA 749
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BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.160e-19
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFD-VHASWDGTKPVDAKWFYTWKTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVA 294
            YK+ + S+Y+  W   MKKE +    TGTF  V    +G K + +KW ++WKT+E GLIVD KAR+ A+GFSQI G ++  + +  PS ASI++ IAVA
Sbjct:  362 YKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVA 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102167.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAZ3_9PHAE1.960e-2146.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE8.320e-2046.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGD1_9PHAE1.120e-1946.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX2_9PHAE1.250e-1946.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBJ6_9PHAE1.330e-1946.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE1.330e-1946.46Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JNP9_9PHAE3.740e-1946.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE6.060e-1946.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE6.130e-1946.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.160e-1946.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102167contigH-fluviatilis_contig102167:511..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog164328.Phyra86609
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.1119914-CDS-H-fluviatilis_contig102167:510..8071622929058.1119914-CDS-H-fluviatilis_contig102167:510..807Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102167 511..807 +
1691135166.6173615-CDS-H-fluviatilis_contig102167:510..8071691135166.6173615-CDS-H-fluviatilis_contig102167:510..807Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102167 511..807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102167.501.1prot_H-fluviatilis_contig102167.501.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102167 511..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102167.501.1

>prot_H-fluviatilis_contig102167.501.1 ID=prot_H-fluviatilis_contig102167.501.1|Name=mRNA_H-fluviatilis_contig102167.501.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=99bp
YKEAVTSRYQDVWIYCMKKEFEKLSTTGTFDVHASWDGTKPVDAKWFYTW
KTDEMGLIVDAKARLAAKGFSQIEGQNYDETFAPTPSVASIRSAIAVAC
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mRNA from alignment at H-fluviatilis_contig102167:511..807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102167.501.1 ID=mRNA_H-fluviatilis_contig102167.501.1|Name=mRNA_H-fluviatilis_contig102167.501.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=297bp|location=Sequence derived from alignment at H-fluviatilis_contig102167:511..807+ (Heribaudiella fluviatilis SAG_13_90)
TACAAGGAAGCGGTGACATCACGATATCAGGACGTTTGGATTTATTGTAT
GAAGAAAGAGTTTGAGAAGCTCAGTACAACCGGAACGTTTGATGTGCATG
CTTCATGGGATGGGACCAAACCTGTTGACGCCAAGTGGTTTTACACTTGG
AAGACTGATGAGATGGGCTTGATAGTAGACGCAAAAGCTAGACTGGCAGC
TAAGGGTTTCTCCCAGATTGAGGGACAAAATTACGATGAAACATTTGCGC
CTACACCATCTGTAGCATCGATCAGGTCTGCCATTGCGGTCGCGTGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102167:511..807+

>mRNA_H-fluviatilis_contig102167.501.1 ID=mRNA_H-fluviatilis_contig102167.501.1|Name=mRNA_H-fluviatilis_contig102167.501.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=594bp|location=Sequence derived from alignment at H-fluviatilis_contig102167:511..807+ (Heribaudiella fluviatilis SAG_13_90)
TACAAGGAAGCGGTGACATCACGATATCAGGACGTTTGGATTTATTGTAT
GAAGAAAGAGTTTGAGAAGCTCAGTACAACCGGAACGTTTGATGTGCATG
CTTCATGGGATGGGACCAAACCTGTTGACGCCAAGTGGTTTTACACTTGG
AAGACTGATGAGATGGGCTTGATAGTAGACGCAAAAGCTAGACTGGCAGC
TAAGGGTTTCTCCCAGATTGAGGGACAAAATTACGATGAAACATTTGCGC
CTACACCATCTGTAGCATCGATCAGGTCTGCCATTGCGGTCGCGTGCTAC
AAGGAAGCGGTGACATCACGATATCAGGACGTTTGGATTTATTGTATGAA
GAAAGAGTTTGAGAAGCTCAGTACAACCGGAACGTTTGATGTGCATGCTT
CATGGGATGGGACCAAACCTGTTGACGCCAAGTGGTTTTACACTTGGAAG
ACTGATGAGATGGGCTTGATAGTAGACGCAAAAGCTAGACTGGCAGCTAA
GGGTTTCTCCCAGATTGAGGGACAAAATTACGATGAAACATTTGCGCCTA
CACCATCTGTAGCATCGATCAGGTCTGCCATTGCGGTCGCGTGC
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