mRNA_H-fluviatilis_contig102156.499.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102156.499.1
Unique NamemRNA_H-fluviatilis_contig102156.499.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.840e-32
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 ANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            A   F G LDILVNNVGT+IRKATVDYTPEE A VMDTNF SLFLLT+L HPLLKAAAAV G++E GGSSV+NISSVAG+T I
Sbjct:  120 AEEHFGGLLDILVNNVGTNIRKATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPI 202          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: D7FL79_ECTSI (Tropinone reductase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL79_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.250e-25
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    4 ANAEFDGKLDILVNNVGTSIRKA-TVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            A   FDG LDILVNNVG SIRK+ T D+TPEEF  +++TNF+++  LT+L HPLLKAAAA +GA++ GGSSVVNISS+AG+T++
Sbjct:   87 AEEHFDGALDILVNNVGRSIRKSSTFDFTPEEFETIINTNFSTVLSLTKLFHPLLKAAAAAEGARDKGGSSVVNISSIAGVTAV 170          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: A0A6H5JMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.120e-20
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 ANAEFDGKLDILVNNVGTSIRKA-TVDYTPEEFAKVMDTNFNSLFLLTQ-----------------------LAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            A   FDG LDILVNNVG SIRK+ T DYTPEEF  ++DTNF+++  LT+                       L HPLLKAAAA +GA+  GGSSVVNISS+AG+ ++
Sbjct:  101 AEERFDGALDILVNNVGRSIRKSSTFDYTPEEFETIIDTNFSTVLSLTKARLYVFTLICLGRFASLIPCSVFLFHPLLKAAAAAEGARAKGGSSVVNISSIAGVIAV 207          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: A0A087G546_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087G546_ARAAL)

HSP 1 Score: 87.4 bits (215), Expect = 4.350e-19
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            + +A F GKL+ILVNNVGT+IRK TVDY+ EE+AK+M TN  S F L+QLAHPLLKA+         G  SVV ISSVAGL  +
Sbjct:   81 EVSAMFSGKLNILVNNVGTNIRKPTVDYSSEEYAKIMSTNLESAFHLSQLAHPLLKAS---------GVGSVVFISSVAGLVHV 155          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.290e-19
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   16 FDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            F G LDILVNNVGTSIR+ATVDYT EE   V+  NF+S F + QL HPLLK A         GG SVVNI SVAG+TSI
Sbjct:   84 FGGSLDILVNNVGTSIRRATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEAQ--------GGGSVVNIGSVAGVTSI 154          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: UPI000A29A4C8 (tropinone reductase homolog At5g06060 isoform X2 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29A4C8)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-18
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGL 243
            +A++ F GKL+ILVNNVGT++RK TV+Y+ EE+AK+M TN  S F L+Q+AHPLLKA+         G  S+V ISSVAGL
Sbjct:   81 EASSAFSGKLNILVNNVGTNVRKPTVEYSSEEYAKIMTTNLESAFHLSQIAHPLLKAS---------GVGSIVFISSVAGL 152          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: A0A7J8N572_9ROSI (Uncharacterized protein n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8N572_9ROSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.530e-18
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   16 FDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            F+GKL+ILVNNVGT+IRK TV+YT EE++K+M TNF S +   QLAHPLLKA+         G  S+V ISSVAGLT I
Sbjct:   27 FNGKLNILVNNVGTNIRKPTVEYTAEEYSKLMSTNFESSYHFCQLAHPLLKAS---------GKGSIVFISSVAGLTHI 96          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: V4SM77_CITCL (Uncharacterized protein n=1 Tax=Citrus clementina TaxID=85681 RepID=V4SM77_CITCL)

HSP 1 Score: 84.7 bits (208), Expect = 1.560e-18
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            Q ++ FDGKL+IL+NNVGT+IRKATV+YT E+F+ +M TNF S + L QLAHPLLKA+         G +S+V +SSV G+ S+
Sbjct:   89 QVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKAS---------GAASIVLMSSVCGVVSV 163          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: V4SCC6_CITCL (Uncharacterized protein n=3 Tax=Citrus TaxID=2706 RepID=V4SCC6_CITCL)

HSP 1 Score: 84.7 bits (208), Expect = 5.390e-18
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI 252
            Q ++ FDGKL+IL+NNVGT+IRKATV+YT E+F+ +M TNF S + L QLAHPLLKA+         G +S+V +SSV G+ S+
Sbjct:   89 QVSSLFDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKAS---------GAASIVLMSSVCGVVSV 163          
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Match: TRNHF_ARATH (Tropinone reductase homolog At5g06060 n=9 Tax=Brassicaceae TaxID=3700 RepID=TRNHF_ARATH)

HSP 1 Score: 84.3 bits (207), Expect = 6.690e-18
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQLAHPLLKAAAAVDGAQEAGGSSVVNISSVAGL 243
            +A++ F GKL+IL+NNVGT++RK TV+Y+ EE+AK+M TN  S F L+Q+AHPLLKA+         G  S+V ISSVAGL
Sbjct:   81 EASSAFSGKLNILINNVGTNVRKPTVEYSSEEYAKIMSTNLESAFHLSQIAHPLLKAS---------GVGSIVFISSVAGL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102156.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL76_ECTSI9.840e-3278.31Tropinone reductase, putative / tropine dehydrogen... [more]
D7FL79_ECTSI2.250e-2564.29Tropinone reductase, putative n=1 Tax=Ectocarpus s... [more]
A0A6H5JMS4_9PHAE4.120e-2051.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A087G546_ARAAL4.350e-1959.52Uncharacterized protein n=2 Tax=Arabis TaxID=50451... [more]
A0A835YM08_9STRA8.290e-1963.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000A29A4C81.020e-1856.79tropinone reductase homolog At5g06060 isoform X2 n... [more]
A0A7J8N572_9ROSI1.530e-1860.76Uncharacterized protein n=1 Tax=Gossypium lobatum ... [more]
V4SM77_CITCL1.560e-1854.76Uncharacterized protein n=1 Tax=Citrus clementina ... [more]
V4SCC6_CITCL5.390e-1854.76Uncharacterized protein n=3 Tax=Citrus TaxID=2706 ... [more]
TRNHF_ARATH6.690e-1855.56Tropinone reductase homolog At5g06060 n=9 Tax=Bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102156contigH-fluviatilis_contig102156:324..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue7.3e-26
Seed eggNOG ortholog2880.D7FL76
KEGG rclassRC00144
KEGG koko:K05354,ko:K08081
KEGG ReactionR02832,R06734
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
GOsGO:0002213,GO:0003674,GO:0003824,GO:0004022,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006950,GO:0006952,GO:0007568,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.206,1.1.1.236
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-19_005190.1
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.9139967-CDS-H-fluviatilis_contig102156:323..4281622929057.9139967-CDS-H-fluviatilis_contig102156:323..428Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102156 324..428 -
1691135166.543936-CDS-H-fluviatilis_contig102156:323..4281691135166.543936-CDS-H-fluviatilis_contig102156:323..428Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102156 324..428 -
1622929057.9254582-CDS-H-fluviatilis_contig102156:669..8161622929057.9254582-CDS-H-fluviatilis_contig102156:669..816Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102156 670..816 -
1691135166.5558226-CDS-H-fluviatilis_contig102156:669..8161691135166.5558226-CDS-H-fluviatilis_contig102156:669..816Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102156 670..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102156.499.1prot_H-fluviatilis_contig102156.499.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102156 324..816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102156.499.1

>prot_H-fluviatilis_contig102156.499.1 ID=prot_H-fluviatilis_contig102156.499.1|Name=mRNA_H-fluviatilis_contig102156.499.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=84bp
QANAEFDGKLDILVNNVGTSIRKATVDYTPEEFAKVMDTNFNSLFLLTQL
AHPLLKAAAAVDGAQEAGGSSVVNISSVAGLTSI
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mRNA from alignment at H-fluviatilis_contig102156:324..816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102156.499.1 ID=mRNA_H-fluviatilis_contig102156.499.1|Name=mRNA_H-fluviatilis_contig102156.499.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=493bp|location=Sequence derived from alignment at H-fluviatilis_contig102156:324..816- (Heribaudiella fluviatilis SAG_13_90)
CAGGCGAATGCCGAGTTCGATGGAAAGCTGGACATCCTTGTGAATAACGT TGGAACCAGCATTCGAAAGGCGACCGTGGATTATACTCCCGAGGAGTTTG CCAAGGTCATGGACACCAATTTCAACTCGCTCTTCCTGCTCACCCAGGTG CGAGCGACCGTAGCTTTCTGCCTCTCAGGCCGAATATTGACAGTTGACAG CTGATACTGTGACCACGCTTTACCTTCTCCGGTGCTCGTTCCCTCGACGC CTACGCTCGTGAAGAGAATCATTGTCATTGCGTTGGAAACATTTGTGTTT GACGGATGTTTGCTGGCAGACCTCATGGCTGACATATACTGTCGACCCCT TTAATTGCCGGTCCGAACTTGATGGAGACGACCTCTAGCTGGCGCACCCG CTGCTGAAGGCGGCAGCTGCCGTGGACGGCGCTCAGGAGGCGGGAGGGTC GTCCGTTGTAAATATATCTAGCGTGGCTGGGCTCACATCCATT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102156:324..816-

>mRNA_H-fluviatilis_contig102156.499.1 ID=mRNA_H-fluviatilis_contig102156.499.1|Name=mRNA_H-fluviatilis_contig102156.499.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=504bp|location=Sequence derived from alignment at H-fluviatilis_contig102156:324..816- (Heribaudiella fluviatilis SAG_13_90)
CAGGCGAATGCCGAGTTCGATGGAAAGCTGGACATCCTTGTGAATAACGT
TGGAACCAGCATTCGAAAGGCGACCGTGGATTATACTCCCGAGGAGTTTG
CCAAGGTCATGGACACCAATTTCAACTCGCTCTTCCTGCTCACCCAGCAG
GCGAATGCCGAGTTCGATGGAAAGCTGGACATCCTTGTGAATAACGTTGG
AACCAGCATTCGAAAGGCGACCGTGGATTATACTCCCGAGGAGTTTGCCA
AGGTCATGGACACCAATTTCAACTCGCTCTTCCTGCTCACCCAGCTGGCG
CACCCGCTGCTGAAGGCGGCAGCTGCCGTGGACGGCGCTCAGGAGGCGGG
AGGGTCGTCCGTTGTAAATATATCTAGCGTGGCTGGGCTCACATCCATTC
TGGCGCACCCGCTGCTGAAGGCGGCAGCTGCCGTGGACGGCGCTCAGGAG
GCGGGAGGGTCGTCCGTTGTAAATATATCTAGCGTGGCTGGGCTCACATC
CATT
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