mRNA_H-fluviatilis_contig10215.498.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10215.498.1
Unique NamemRNA_H-fluviatilis_contig10215.498.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10215.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10215contigH-fluviatilis_contig10215:7361..7957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size570
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.8519533-UTR-H-fluviatilis_contig10215:7360..73871622929057.8519533-UTR-H-fluviatilis_contig10215:7360..7387Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10215 7361..7387 +
1691135166.5249119-UTR-H-fluviatilis_contig10215:7360..73871691135166.5249119-UTR-H-fluviatilis_contig10215:7360..7387Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10215 7361..7387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.8679297-CDS-H-fluviatilis_contig10215:7387..79571622929057.8679297-CDS-H-fluviatilis_contig10215:7387..7957Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10215 7388..7957 +
1691135166.5348413-CDS-H-fluviatilis_contig10215:7387..79571691135166.5348413-CDS-H-fluviatilis_contig10215:7387..7957Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10215 7388..7957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10215.498.1prot_H-fluviatilis_contig10215.498.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10215 7388..7957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10215.498.1

>prot_H-fluviatilis_contig10215.498.1 ID=prot_H-fluviatilis_contig10215.498.1|Name=mRNA_H-fluviatilis_contig10215.498.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=190bp
MDVIKVNTLPTAQGATIEGSSATPAGQLEGEGAMAATVEVVEELIPVAVD
KRPIAMPSEASVAVDETSSVIPHEAPTAAVKEQVEVDPTALSEEVPVVVE
EAIVATVDKSSPATVKVPAVTALEDEIEKKAVAVSAKAPQEIDESSIDVV
GRVTHEFVDEPSAIVPEEAPPKTDETSVFAKEPTTATVKE
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mRNA from alignment at H-fluviatilis_contig10215:7361..7957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10215.498.1 ID=mRNA_H-fluviatilis_contig10215.498.1|Name=mRNA_H-fluviatilis_contig10215.498.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=597bp|location=Sequence derived from alignment at H-fluviatilis_contig10215:7361..7957+ (Heribaudiella fluviatilis SAG_13_90)
GTGGCACCTCCGCCAGTAGCCTCCACGATGGACGTGATAAAGGTGAACAC
CCTTCCGACAGCGCAAGGGGCGACTATCGAAGGCTCTTCTGCTACGCCTG
CAGGGCAACTCGAAGGGGAAGGGGCTATGGCGGCCACCGTGGAGGTAGTC
GAAGAGCTCATCCCCGTAGCGGTAGACAAAAGACCAATCGCCATGCCTTC
GGAGGCGTCGGTCGCTGTTGACGAGACCTCTTCCGTGATCCCGCACGAGG
CGCCGACAGCTGCCGTCAAGGAGCAGGTCGAAGTTGATCCCACCGCATTA
TCGGAGGAAGTGCCGGTAGTGGTCGAGGAGGCAATCGTGGCAACGGTTGA
CAAGTCGAGTCCGGCTACTGTGAAAGTTCCAGCAGTTACTGCCCTCGAGG
ACGAGATCGAAAAAAAAGCCGTCGCCGTGTCAGCGAAAGCACCGCAAGAG
ATCGACGAGTCGTCTATAGACGTAGTCGGGCGAGTAACCCATGAATTTGT
CGACGAGCCGTCCGCGATCGTTCCCGAAGAAGCGCCACCCAAAACTGACG
AGACGAGCGTATTCGCGAAGGAGCCTACTACAGCGACTGTGAAGGAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10215:7361..7957+

>mRNA_H-fluviatilis_contig10215.498.1 ID=mRNA_H-fluviatilis_contig10215.498.1|Name=mRNA_H-fluviatilis_contig10215.498.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1140bp|location=Sequence derived from alignment at H-fluviatilis_contig10215:7361..7957+ (Heribaudiella fluviatilis SAG_13_90)
ATGGACGTGATAAAGGTGAACACCCTTCCGACAGCGCAAGGGGCGACTAT
CGAAGGCTCTTCTGCTACGCCTGCAGGGCAACTCGAAGGGGAAGGGGCTA
TGGCGGCCACCGTGGAGGTAGTCGAAGAGCTCATCCCCGTAGCGGTAGAC
AAAAGACCAATCGCCATGCCTTCGGAGGCGTCGGTCGCTGTTGACGAGAC
CTCTTCCGTGATCCCGCACGAGGCGCCGACAGCTGCCGTCAAGGAGCAGG
TCGAAGTTGATCCCACCGCATTATCGGAGGAAGTGCCGGTAGTGGTCGAG
GAGGCAATCGTGGCAACGGTTGACAAGTCGAGTCCGGCTACTGTGAAAGT
TCCAGCAGTTACTGCCCTCGAGGACGAGATCGAAAAAAAAGCCGTCGCCG
TGTCAGCGAAAGCACCGCAAGAGATCGACGAGTCGTCTATAGACGTAGTC
GGGCGAGTAACCCATGAATTTGTCGACGAGCCGTCCGCGATCGTTCCCGA
AGAAGCGCCACCCAAAACTGACGAGACGAGCGTATTCGCGAAGGAGCCTA
CTACAGCGACTGTGAAGGAGATGGACGTGATAAAGGTGAACACCCTTCCG
ACAGCGCAAGGGGCGACTATCGAAGGCTCTTCTGCTACGCCTGCAGGGCA
ACTCGAAGGGGAAGGGGCTATGGCGGCCACCGTGGAGGTAGTCGAAGAGC
TCATCCCCGTAGCGGTAGACAAAAGACCAATCGCCATGCCTTCGGAGGCG
TCGGTCGCTGTTGACGAGACCTCTTCCGTGATCCCGCACGAGGCGCCGAC
AGCTGCCGTCAAGGAGCAGGTCGAAGTTGATCCCACCGCATTATCGGAGG
AAGTGCCGGTAGTGGTCGAGGAGGCAATCGTGGCAACGGTTGACAAGTCG
AGTCCGGCTACTGTGAAAGTTCCAGCAGTTACTGCCCTCGAGGACGAGAT
CGAAAAAAAAGCCGTCGCCGTGTCAGCGAAAGCACCGCAAGAGATCGACG
AGTCGTCTATAGACGTAGTCGGGCGAGTAACCCATGAATTTGTCGACGAG
CCGTCCGCGATCGTTCCCGAAGAAGCGCCACCCAAAACTGACGAGACGAG
CGTATTCGCGAAGGAGCCTACTACAGCGACTGTGAAGGAG
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