mRNA_H-fluviatilis_contig102130.496.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102130.496.1
Unique NamemRNA_H-fluviatilis_contig102130.496.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102130.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102130contigH-fluviatilis_contig102130:76..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.67607-CDS-H-fluviatilis_contig102130:77..1591622929057.67607-CDS-H-fluviatilis_contig102130:77..159Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102130 78..159 -
1691135166.478081-CDS-H-fluviatilis_contig102130:77..1591691135166.478081-CDS-H-fluviatilis_contig102130:77..159Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102130 78..159 -
1622929057.6860423-CDS-H-fluviatilis_contig102130:207..3921622929057.6860423-CDS-H-fluviatilis_contig102130:207..392Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102130 208..392 -
1691135166.4880233-CDS-H-fluviatilis_contig102130:207..3921691135166.4880233-CDS-H-fluviatilis_contig102130:207..392Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102130 208..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102130.496.1prot_H-fluviatilis_contig102130.496.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102130 78..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102130.496.1

>prot_H-fluviatilis_contig102130.496.1 ID=prot_H-fluviatilis_contig102130.496.1|Name=mRNA_H-fluviatilis_contig102130.496.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=89bp
GEGGVAQRHCERGAVSSSHCGGGGRPSERPPSVCTATLCGAGKDSAGRRH
CAAGRSGLRHHRRARRAAAAGRVIAVFTVNVDPRCAASM
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mRNA from alignment at H-fluviatilis_contig102130:76..392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102130.496.1 ID=mRNA_H-fluviatilis_contig102130.496.1|Name=mRNA_H-fluviatilis_contig102130.496.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=317bp|location=Sequence derived from alignment at H-fluviatilis_contig102130:76..392- (Heribaudiella fluviatilis SAG_13_90)
GGCGAAGGCGGAGTTGCGCAACGACATTGCGAGCGCGGCGCGGTCAGCTC
GTCACACTGTGGTGGTGGTGGACGGCCGTCTGAACGACCTCCGTCTGTTT
GCACAGCAACGCTGTGCGGGGCTGGCAAAGACAGCGCTGGCCGGCGTCAC
TGTGCTGCTGGAAGATCTGGATTACGACACCACCGGTTAGGCCATGAATG
CCACGGCCTGCGCTTGTTGAGTATGTTTGGCAGGCGTGCCAGACGTGCTG
CGGCGGCAGGGCGAGTCATCGCTGTCTTCACAGTCAATGTTGATCCACGC
TGTGCTGCGTCGATGCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102130:76..392-

>mRNA_H-fluviatilis_contig102130.496.1 ID=mRNA_H-fluviatilis_contig102130.496.1|Name=mRNA_H-fluviatilis_contig102130.496.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=534bp|location=Sequence derived from alignment at H-fluviatilis_contig102130:76..392- (Heribaudiella fluviatilis SAG_13_90)
GGCGAAGGCGGAGTTGCGCAACGACATTGCGAGCGCGGCGCGGTCAGCTC
GTCACACTGTGGTGGTGGTGGACGGCCGTCTGAACGACCTCCGTCTGTTT
GCACAGCAACGCTGTGCGGGGCTGGCAAAGACAGCGCTGGCCGGCGTCAC
TGTGCTGCTGGAAGATCTGGATTACGACACCACCGGGCGAAGGCGGAGTT
GCGCAACGACATTGCGAGCGCGGCGCGGTCAGCTCGTCACACTGTGGTGG
TGGTGGACGGCCGTCTGAACGACCTCCGTCTGTTTGCACAGCAACGCTGT
GCGGGGCTGGCAAAGACAGCGCTGGCCGGCGTCACTGTGCTGCTGGAAGA
TCTGGATTACGACACCACCGGCGTGCCAGACGTGCTGCGGCGGCAGGGCG
AGTCATCGCTGTCTTCACAGTCAATGTTGATCCACGCTGTGCTGCGTCGA
TGGCGTGCCAGACGTGCTGCGGCGGCAGGGCGAGTCATCGCTGTCTTCAC
AGTCAATGTTGATCCACGCTGTGCTGCGTCGATG
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