mRNA_H-fluviatilis_contig10212.493.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10212.493.1
Unique NamemRNA_H-fluviatilis_contig10212.493.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10212.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10212contigH-fluviatilis_contig10212:6622..6972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.5961268-CDS-H-fluviatilis_contig10212:6621..69721622929057.5961268-CDS-H-fluviatilis_contig10212:6621..6972Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10212 6622..6972 +
1691135166.4590065-CDS-H-fluviatilis_contig10212:6621..69721691135166.4590065-CDS-H-fluviatilis_contig10212:6621..6972Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10212 6622..6972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10212.493.1prot_H-fluviatilis_contig10212.493.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10212 6622..6972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10212.493.1

>prot_H-fluviatilis_contig10212.493.1 ID=prot_H-fluviatilis_contig10212.493.1|Name=mRNA_H-fluviatilis_contig10212.493.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=117bp
SVTPIRDHPLVAVTASPQVLDVPVLQHLSANHVDDVPPPPPGPPPDLDQP
HPQPLEQLHTELNLQHHAQETPQAIGANDARSSKPRKQPPPPPPGGPPPG
VLSRPIAHTHQPQQHVQ
back to top

mRNA from alignment at H-fluviatilis_contig10212:6622..6972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10212.493.1 ID=mRNA_H-fluviatilis_contig10212.493.1|Name=mRNA_H-fluviatilis_contig10212.493.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=351bp|location=Sequence derived from alignment at H-fluviatilis_contig10212:6622..6972+ (Heribaudiella fluviatilis SAG_13_90)
TCTGTGACTCCGATCCGCGACCACCCGCTGGTGGCGGTCACTGCGTCTCC
ACAGGTTCTGGACGTGCCAGTCTTGCAGCATCTTTCAGCAAATCACGTTG
ATGATGTTCCACCTCCGCCGCCGGGACCTCCTCCAGACTTAGACCAGCCC
CATCCACAACCGCTCGAGCAGCTCCATACCGAACTGAATCTGCAGCATCA
TGCGCAAGAAACGCCGCAGGCTATCGGTGCCAACGATGCACGCTCTAGCA
AACCGCGAAAACAGCCACCGCCACCTCCACCGGGGGGTCCACCTCCTGGT
GTCCTATCGCGGCCAATTGCCCACACGCACCAACCTCAACAGCATGTCCA
G
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10212:6622..6972+

>mRNA_H-fluviatilis_contig10212.493.1 ID=mRNA_H-fluviatilis_contig10212.493.1|Name=mRNA_H-fluviatilis_contig10212.493.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=702bp|location=Sequence derived from alignment at H-fluviatilis_contig10212:6622..6972+ (Heribaudiella fluviatilis SAG_13_90)
TCTGTGACTCCGATCCGCGACCACCCGCTGGTGGCGGTCACTGCGTCTCC
ACAGGTTCTGGACGTGCCAGTCTTGCAGCATCTTTCAGCAAATCACGTTG
ATGATGTTCCACCTCCGCCGCCGGGACCTCCTCCAGACTTAGACCAGCCC
CATCCACAACCGCTCGAGCAGCTCCATACCGAACTGAATCTGCAGCATCA
TGCGCAAGAAACGCCGCAGGCTATCGGTGCCAACGATGCACGCTCTAGCA
AACCGCGAAAACAGCCACCGCCACCTCCACCGGGGGGTCCACCTCCTGGT
GTCCTATCGCGGCCAATTGCCCACACGCACCAACCTCAACAGCATGTCCA
GTCTGTGACTCCGATCCGCGACCACCCGCTGGTGGCGGTCACTGCGTCTC
CACAGGTTCTGGACGTGCCAGTCTTGCAGCATCTTTCAGCAAATCACGTT
GATGATGTTCCACCTCCGCCGCCGGGACCTCCTCCAGACTTAGACCAGCC
CCATCCACAACCGCTCGAGCAGCTCCATACCGAACTGAATCTGCAGCATC
ATGCGCAAGAAACGCCGCAGGCTATCGGTGCCAACGATGCACGCTCTAGC
AAACCGCGAAAACAGCCACCGCCACCTCCACCGGGGGGTCCACCTCCTGG
TGTCCTATCGCGGCCAATTGCCCACACGCACCAACCTCAACAGCATGTCC
AG
back to top