mRNA_H-fluviatilis_contig102.463.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102.463.1
Unique NamemRNA_H-fluviatilis_contig102.463.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.580e-31
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  493 QKVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            Q+VL TLQ LG GNCFDD+ QLS MS+ + AATFHKFCK F +EL+E+HI+LPTG+ Q+  +  Y KLG TGAIGSTDVTH+ W  C
Sbjct:    2 QQVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMC 88          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.490e-30
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  493 QKVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            Q+VL  LQILG GNCFDD+ QLS MS+ + AATFHKFCK F +EL+E+HI+LPTG+ Q+  +  Y KLG TGAIGSTDVTH+ W  C
Sbjct:    2 QQVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMC 88          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.180e-29
Identity = 66/147 (44.90%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  319 QWSSRYACMRFRVRG*RL*NRGEEPVCA*WHCIRWDTQKLPLFRRCGQAR--RLHCEHPAQKVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            +W  +Y C R   R         E     W        +L  F+  G  R      +  + K+L  LQILG GNCFDD+ QLS MS+ + AATFHKFCK F +EL+E+HI+LPTG+ Q+  +  Y KLG TGAIGSTDVTH+ W  C
Sbjct:  205 RWHRKYCCRRPTAR---------EKRRTLWF-------RLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMC 335          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.010e-25
Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   12 MAEWAVVLELLEEDDSMNGGQGDGDAARVKRTRRVYPRADSSAAPWSLML-KNDLSDHTSRDARVFRRRFRVPYVFFKQVVKLVKDTKWFASVEEDVAGRSCIPVELKVCMY 344
            ++ W VVL    + D +   +G G  + VKRTRRV PR D  A+ W  ML +  L +  SR+A++FRRRFR+PY FF ++++LVK  KWF   ++DVAGR CIPVELKV  +
Sbjct:   25 VSTWRVVLRSFPDGDELED-EGLGGGSPVKRTRRVLPRPDYRASFWWRMLGETGLKEPVSREAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKKDVAGRMCIPVELKVMYF 135          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5KL26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL26_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.940e-24
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 3
Query:    9 TMAEWAVVLELLEEDDSMNGGQGDGDAARVKRTRRVYPRADSSAAPWSLML-KNDLSDHTSRDARVFRRRFRVPYVFFKQVVKLVKDTKWFASVEEDVAGRSCIPVEL 329
            T++ W VVL    +DD +   +G G    VKR RRV PR D  A+ W  ML +  L +  SR+ ++FRRRFR+PY FF ++V+LVK+ KWF   ++DVAGR CIPVEL
Sbjct:   40 TVSAWRVVLRSFPDDDELED-EGLGGGPPVKRARRVLPRPDYRASFWWRMLGETGLKEPASREGKLFRRRFRIPYQFFTELVELVKEKKWFPMRKQDVAGRMCIPVEL 146          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.610e-23
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  484 HPAQ-KVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQET--AVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            HP + KVLA L ILG GNCF  + Q+S+MS A   A FHKFCK F  E+Y++HI+LP+    E    ++QY +LGF+GA+GS DVTH+ W +C
Sbjct:  120 HPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKC 212          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.750e-23
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  514 QILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            Q+LG GNCFDDV QLS MS+++   TFHKFC+ F  E++++HI+LPTG   +  +  +H+LG+TGA GSTDVTH+ W+ C
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMC 121          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.450e-22
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  496 KVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            KVLA LQIL  GNCF D+  +S++S    AATFH+F + F  E+Y +HIFLPTG  Q+  + QY +LGF+GA GSTDVTH+ W  C
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMC 243          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5KPT7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.050e-22
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 3
Query:    9 TMAEWAVVLELLEEDDSMNGGQGDGDAARVKRTRRVYPRADSSAAPWSLML-KNDLSDHTSRDARVFRRRFRVPYVFFKQVVKLVKDTKWFASVEEDVAGRSCIPVELKVCMY 344
            T+A W VVL    + D +   +G G  + VKRTRRV PR D  A+ W  ML +  L +  SR+ ++FR RFR+PY F  ++++LVK  K F   ++DVAGR CIPVELKV  Y
Sbjct:   40 TVATWRVVLRSFPDGDELED-EGLGGGSPVKRTRRVLPRPDYRASFWWRMLGETGLKEPASREVKLFRGRFRIPYQFLTELMELVKKKKRFPMRKKDVAGRMCIPVELKVMYY 151          
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.010e-21
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  487 PAQKVLATLQILGGGNCFDDVSQLSYMSEAITAATFHKFCKPFDEELYEKHIFLPTGAAQETAVEQYHKLGFTGAIGSTDVTHLRWDRC 753
            P  +VLA LQIL  GN F D+  +S++S    A+TFH+FCK F  ELY+++++LPTG      +EQY ++GF GA+GSTDVTH+ W  C
Sbjct:   80 PHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMC 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE1.580e-3164.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.490e-3064.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE2.180e-2944.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGJ6_9PHAE7.010e-2548.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL26_9PHAE1.940e-2449.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L642_9PHAE5.610e-2352.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE6.750e-2355.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.450e-2255.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPT7_9PHAE7.050e-2246.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.010e-2150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102contigH-fluviatilis_contig102:63383..64821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size755
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102.463.1prot_H-fluviatilis_contig102.463.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102 63394..63834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.562192-UTR-H-fluviatilis_contig102:63382..633931622929053.562192-UTR-H-fluviatilis_contig102:63382..63393Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 63383..63393 +
1691135165.1012805-UTR-H-fluviatilis_contig102:63382..633931691135165.1012805-UTR-H-fluviatilis_contig102:63382..63393Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 63383..63393 +
1622929053.5834277-UTR-H-fluviatilis_contig102:63834..638801622929053.5834277-UTR-H-fluviatilis_contig102:63834..63880Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 63835..63880 +
1691135165.1213732-UTR-H-fluviatilis_contig102:63834..638801691135165.1213732-UTR-H-fluviatilis_contig102:63834..63880Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 63835..63880 +
1622929053.5962863-UTR-H-fluviatilis_contig102:64564..648211622929053.5962863-UTR-H-fluviatilis_contig102:64564..64821Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 64565..64821 +
1691135165.13179-UTR-H-fluviatilis_contig102:64564..648211691135165.13179-UTR-H-fluviatilis_contig102:64564..64821Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 64565..64821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.5729692-CDS-H-fluviatilis_contig102:63393..638341622929053.5729692-CDS-H-fluviatilis_contig102:63393..63834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 63394..63834 +
1691135165.1098719-CDS-H-fluviatilis_contig102:63393..638341691135165.1098719-CDS-H-fluviatilis_contig102:63393..63834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 63394..63834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102.463.1

>prot_H-fluviatilis_contig102.463.1 ID=prot_H-fluviatilis_contig102.463.1|Name=mRNA_H-fluviatilis_contig102.463.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=147bp
MAEWAVVLELLEEDDSMNGGQGDGDAARVKRTRRVYPRADSSAAPWSLML
KNDLSDHTSRDARVFRRRFRVPYVFFKQVVKLVKDTKWFASVEEDVAGRS
CIPVELKVCMYAISCPWVTSVKPWRRTGMRMMALYTLGHAEAAAVP*
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mRNA from alignment at H-fluviatilis_contig102:63383..64821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102.463.1 ID=mRNA_H-fluviatilis_contig102.463.1|Name=mRNA_H-fluviatilis_contig102.463.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1439bp|location=Sequence derived from alignment at H-fluviatilis_contig102:63383..64821+ (Heribaudiella fluviatilis SAG_13_90)
GGTTGAGGACCATGGCAGAGTGGGCAGTGGTGCTGGAGTTGCTGGAGGAG GATGATTCCATGAATGGGGGACAGGGCGACGGCGACGCTGCCCGTGTGAA GCGCACCCGGCGTGTGTATCCACGTGCAGACTCCAGCGCGGCACCGTGGT CACTAATGCTGAAAAATGACCTGTCGGACCATACCTCGAGAGATGCAAGA GTATTTCGGAGGCGCTTCCGCGTCCCCTACGTCTTCTTCAAGCAGGTGGT CAAGTTGGTGAAGGATACCAAGTGGTTTGCATCTGTCGAAGAGGATGTTG CAGGGCGGAGCTGCATCCCAGTGGAGCTCAAGGTATGCATGTATGCGATT TCGTGTCCGTGGGTGACGTCTGTGAAACCGTGGAGAAGAACCGGTATGCG CATGATGGCATTGTATACGTTGGGACACGCAGAAGCTGCCGCTGTTCCGT AGATGCGGGCAAGCACGACGGCTGCACTGTGAACACCCAGCTCAAAAGGT ACATGCTTCCCACCTTACCTTTACCGTTCTTTGCCACAACGCCTTGCTGC TTCATGCGACCTATTGCTGAGTGCATGTTGGAATCTTGGTTTCAGCCAGT GCACAACACGGTTGTGACCATTCGAACCCATACCATGAGTTGGTGCAGCT GCTTTGTACTAGATCTCACAAGCGGTGTGCTCGGCTGACGACTTTGCCGG ATCTAACTTGCCGTGGAATAACGCTGTTCCCGCTGGTGTGTGCGGATATC CACGCCAATATGATGAAGGGTATCTGTACATGTCAATGAAACGCGAAATA ACAGGTATGGGGCTAACATGTCGACCAAACCGCGGAGTTACCAATCGGTC TAGAGGCAATGCAGACCCTGGCACGATCGTGCGGGCCTATGTCTCCGAGC TCTACGGGCCGGCATCGACACTGATCCTGACTGTATCATGCTTATGCGGT GAATTCCAGCTTGTTGCCGATTGAATAGGACGTACGGCTGCAGGTAAATC AGGGGCAGAGTCACATGATGAAATCAAGGAACGCCCTTCGTTTTACCCTT TGTGCACGAGAAACTCCCACATCACTTTTTTGTACTCTAGTCACCACGAT ACCGTACGTACGCCGTATTTACATTTTTGTCGAGGCGAACATGAAAGCAA CGTCGATATGAACTTGTGCCCGTGCGTGGCAGGTTTTGGCAACACTACAG ATATTGGGCGGGGGCAACTGCTTCGACGACGTCAGCCAATTGTCGTACAT GAGTGAGGCGATCACAGCTGCCACGTTCCACAAATTCTGCAAGCCCTTTG ATGAGGAGCTTTACGAGAAGCACATATTTCTCCCGACTGGAGCTGCCCAG GAGACGGCAGTGGAGCAGTACCACAAGCTGGGGTTCACTGGAGCGATCGG GTCGACCGATGTAACCCACTTGAGATGGGACCGCTGCAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102:63383..64821+

>mRNA_H-fluviatilis_contig102.463.1 ID=mRNA_H-fluviatilis_contig102.463.1|Name=mRNA_H-fluviatilis_contig102.463.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=882bp|location=Sequence derived from alignment at H-fluviatilis_contig102:63383..64821+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCAGAGTGGGCAGTGGTGCTGGAGTTGCTGGAGGAGGATGATTCCAT
GAATGGGGGACAGGGCGACGGCGACGCTGCCCGTGTGAAGCGCACCCGGC
GTGTGTATCCACGTGCAGACTCCAGCGCGGCACCGTGGTCACTAATGCTG
AAAAATGACCTGTCGGACCATACCTCGAGAGATGCAAGAGTATTTCGGAG
GCGCTTCCGCGTCCCCTACGTCTTCTTCAAGCAGGTGGTCAAGTTGGTGA
AGGATACCAAGTGGTTTGCATCTGTCGAAGAGGATGTTGCAGGGCGGAGC
TGCATCCCAGTGGAGCTCAAGGTATGCATGTATGCGATTTCGTGTCCGTG
GGTGACGTCTGTGAAACCGTGGAGAAGAACCGGTATGCGCATGATGGCAT
TGTATACGTTGGGACACGCAGAAGCTGCCGCTGTTCCGTAGATGGCAGAG
TGGGCAGTGGTGCTGGAGTTGCTGGAGGAGGATGATTCCATGAATGGGGG
ACAGGGCGACGGCGACGCTGCCCGTGTGAAGCGCACCCGGCGTGTGTATC
CACGTGCAGACTCCAGCGCGGCACCGTGGTCACTAATGCTGAAAAATGAC
CTGTCGGACCATACCTCGAGAGATGCAAGAGTATTTCGGAGGCGCTTCCG
CGTCCCCTACGTCTTCTTCAAGCAGGTGGTCAAGTTGGTGAAGGATACCA
AGTGGTTTGCATCTGTCGAAGAGGATGTTGCAGGGCGGAGCTGCATCCCA
GTGGAGCTCAAGGTATGCATGTATGCGATTTCGTGTCCGTGGGTGACGTC
TGTGAAACCGTGGAGAAGAACCGGTATGCGCATGATGGCATTGTATACGT
TGGGACACGCAGAAGCTGCCGCTGTTCCGTAG
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