mRNA_H-fluviatilis_contig102.462.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102.462.1
Unique NamemRNA_H-fluviatilis_contig102.462.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig102.462.1 vs. uniprot
Match: B5LWE0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE0_9PHYC)

HSP 1 Score: 72.4 bits (176), Expect = 4.290e-14
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    1 PPAWLPGTPSLLHESNVYCGDVACKFVESTPSVSNMQSTRXXXXXSNIPDCKKVDSKLPEPSRSCGNEMGCGLKSACSSPITIDEDDSRYSVSTDDMMQKLLAGRR 318
            PP WLPGTP+++  ++VYCGD A  F+E+                  + D      + P PS+  G + G  L  A  SP  ID D+S + VSTDDM++++LAGRR
Sbjct:   43 PPPWLPGTPTVVDGADVYCGDAAFSFLET------------------LEDIDDNSDENPRPSKRPG-DYGQALAQAFKSPEPIDVDESSFDVSTDDMLERILAGRR 129
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BLAST of mRNA_H-fluviatilis_contig102.462.1 vs. uniprot
Match: Q6XLZ4_9PHYC (FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ4_9PHYC)

HSP 1 Score: 61.6 bits (148), Expect = 7.190e-10
Identity = 46/109 (42.20%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 PPAWLPGTPSLLHESNVYCGDVACKFVESTPSVSNMQ-STRXXXXXSNIPDCKKVDSKLPEPSRSCGNEMGCGLKSACSS-PITI-DEDDSRYSVSTDDMMQKLLAGRR 318
            PP WLPGTPSL+  ++VYCGD A K+VE      NMQ ST        +     V SK            G GL  A +  P  + D+D+SR  +ST+DMM +LLA RR
Sbjct:   42 PPTWLPGTPSLVCGNDVYCGDAAFKYVE------NMQRSTAAAEPSKAMTGQPSVASK------------GLGLSQAFAPVPSAVSDDDESRPMISTNDMMNRLLAERR 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWE0_9PHYC4.290e-1438.68Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLZ4_9PHYC7.190e-1042.20FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102contigH-fluviatilis_contig102:52963..53280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.5268412-CDS-H-fluviatilis_contig102:52962..532801622929053.5268412-CDS-H-fluviatilis_contig102:52962..53280Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 52963..53280 +
1691135165.0924993-CDS-H-fluviatilis_contig102:52962..532801691135165.0924993-CDS-H-fluviatilis_contig102:52962..53280Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 52963..53280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102.462.1prot_H-fluviatilis_contig102.462.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102 52963..53280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102.462.1

>prot_H-fluviatilis_contig102.462.1 ID=prot_H-fluviatilis_contig102.462.1|Name=mRNA_H-fluviatilis_contig102.462.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=106bp
PPAWLPGTPSLLHESNVYCGDVACKFVESTPSVSNMQSTRNMQSNSNIPD
CKKVDSKLPEPSRSCGNEMGCGLKSACSSPITIDEDDSRYSVSTDDMMQK
LLAGRR
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mRNA from alignment at H-fluviatilis_contig102:52963..53280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102.462.1 ID=mRNA_H-fluviatilis_contig102.462.1|Name=mRNA_H-fluviatilis_contig102.462.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=318bp|location=Sequence derived from alignment at H-fluviatilis_contig102:52963..53280+ (Heribaudiella fluviatilis SAG_13_90)
CCTCCGGCGTGGTTACCAGGGACACCGAGCCTTCTACACGAGAGCAACGT
GTATTGTGGTGACGTGGCTTGCAAGTTCGTTGAGAGCACCCCGAGTGTGT
CGAACATGCAGAGCACCCGAAATATGCAGTCGAACTCAAACATTCCGGAT
TGTAAAAAAGTTGACTCAAAATTACCGGAACCTTCTCGATCGTGTGGAAA
TGAAATGGGCTGCGGTTTAAAATCTGCGTGTTCGTCTCCAATTACAATCG
ATGAGGACGACAGCAGGTACTCAGTGTCCACGGATGATATGATGCAGAAA
TTATTGGCGGGAAGAAGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102:52963..53280+

>mRNA_H-fluviatilis_contig102.462.1 ID=mRNA_H-fluviatilis_contig102.462.1|Name=mRNA_H-fluviatilis_contig102.462.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=636bp|location=Sequence derived from alignment at H-fluviatilis_contig102:52963..53280+ (Heribaudiella fluviatilis SAG_13_90)
CCTCCGGCGTGGTTACCAGGGACACCGAGCCTTCTACACGAGAGCAACGT
GTATTGTGGTGACGTGGCTTGCAAGTTCGTTGAGAGCACCCCGAGTGTGT
CGAACATGCAGAGCACCCGAAATATGCAGTCGAACTCAAACATTCCGGAT
TGTAAAAAAGTTGACTCAAAATTACCGGAACCTTCTCGATCGTGTGGAAA
TGAAATGGGCTGCGGTTTAAAATCTGCGTGTTCGTCTCCAATTACAATCG
ATGAGGACGACAGCAGGTACTCAGTGTCCACGGATGATATGATGCAGAAA
TTATTGGCGGGAAGAAGACCTCCGGCGTGGTTACCAGGGACACCGAGCCT
TCTACACGAGAGCAACGTGTATTGTGGTGACGTGGCTTGCAAGTTCGTTG
AGAGCACCCCGAGTGTGTCGAACATGCAGAGCACCCGAAATATGCAGTCG
AACTCAAACATTCCGGATTGTAAAAAAGTTGACTCAAAATTACCGGAACC
TTCTCGATCGTGTGGAAATGAAATGGGCTGCGGTTTAAAATCTGCGTGTT
CGTCTCCAATTACAATCGATGAGGACGACAGCAGGTACTCAGTGTCCACG
GATGATATGATGCAGAAATTATTGGCGGGAAGAAGA
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