mRNA_H-fluviatilis_contig102.461.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102.461.1
Unique NamemRNA_H-fluviatilis_contig102.461.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
[Close]
BLAST of mRNA_H-fluviatilis_contig102.461.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.400e-22
Identity = 75/250 (30.00%), Postives = 130/250 (52.00%), Query Frame = 1 
Query:    1 CGLCKAQSEPTRFEGILLSILCSGCASNHLNDDGKSLVCASRAVTEFGATKSD-LDHLYSRSVRNPHYRSAATMKMFSRAEIKVKADQREAVLQSKLSKLEESRRLRMERFKKSNRIAPEN-VSESMRETVFGDYLESLRPKTTLKRVKKLYCLANLAKSICQLDSSAALRFLQNRDIDPSKSSREVADLLYYNADLLSRIAETDFVNISRFLSKSDITNISEIETVGRIPKLLLDYKSNNMVRLEYALK 744
            C  C   +    FEGI L+++C  CAS  L+D+G  +VC S+A   F       +  L S   RNPHYR+AA M+M+S AE++V     +   ++K +++ + R++R+ER  + + I+P   +  ++   +FGDYL +  PK  LK+VK  +   +++  +C  D  AA+ + +NR I       ++     Y+  + +R    + V ISR+L  S++  +     + +IP  +   K N    L  AL+
Sbjct:    5 CTSCNQTNSLGIFEGIRLTLVCKSCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQVAQKRQVRLERLTRVHGISPAAPLHHALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYD-QLRRAFEYSLFVSTRAFRLEGVAISRYLCPSELAELKN-GPLSQIPASVERLKKNAPRMLRMALQ 252
[Close]
BLAST of mRNA_H-fluviatilis_contig102.461.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K)

HSP 1 Score: 102 bits (253), Expect = 1.310e-20
Identity = 74/238 (31.09%), Postives = 126/238 (52.94%), Query Frame = 1 
Query:   37 FEGILLSILCSGCASNHLNDDGKSLVCASRAVTEFGATKSD-LDHLYSRSVRNPHYRSAATMKMFSRAEIKVKADQREAVLQSKLSKLEESRRLRMERFKKSNRIAPEN-VSESMRETVFGDYLESLRPKTTLKRVKKLYCLANLAKSICQLDSSAALRFLQNRDIDPSKSSREVADLLYYNADLLSRIAETDFVNISRFLSKSDITNISEIETVGRIPKLLLDYKSNNMVRLEYALK 744
            FEGI L+++C+ CAS   +D+G  +VC S+A   F       +  L S   RNPHYR+AA M+M+S AE++V     +   ++K  ++E+ R++R+ER  + + I+P   +  ++   +FGDYL +  PK  LK+VK  +   +++  +C  D  AA+ + +NR I      +   D   Y+  + +R    + V ISRF   S++  +     + +IP  +   K N    L  AL+
Sbjct:   14 FEGIRLTLVCTSCASTARSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQAAVDEECEAKALEVEKKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWATHPKQKLKQVKYRFSAHDISVRLCPHDPVAAMNYCENRGITAFVYDQLRRDF-EYSLFVSTRAFRLEGVAISRFFCPSELAELKN-GPLSQIPASVERLKKNAPRMLRMALQ 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM66_9PHAE6.400e-2230.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN81_ESV1K1.310e-2031.09EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102contigH-fluviatilis_contig102:47301..48342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1042
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102.461.1prot_H-fluviatilis_contig102.461.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102 47517..48320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.4525752-UTR-H-fluviatilis_contig102:47300..475161622929053.4525752-UTR-H-fluviatilis_contig102:47300..47516Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 47301..47516 +
1691135165.0666623-UTR-H-fluviatilis_contig102:47300..475161691135165.0666623-UTR-H-fluviatilis_contig102:47300..47516Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 47301..47516 +
1622929053.4801157-UTR-H-fluviatilis_contig102:48320..483421622929053.4801157-UTR-H-fluviatilis_contig102:48320..48342Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 48321..48342 +
1691135165.084755-UTR-H-fluviatilis_contig102:48320..483421691135165.084755-UTR-H-fluviatilis_contig102:48320..48342Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 48321..48342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.4662042-CDS-H-fluviatilis_contig102:47516..483201622929053.4662042-CDS-H-fluviatilis_contig102:47516..48320Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 47517..48320 +
1691135165.0766551-CDS-H-fluviatilis_contig102:47516..483201691135165.0766551-CDS-H-fluviatilis_contig102:47516..48320Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 47517..48320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102.461.1

>prot_H-fluviatilis_contig102.461.1 ID=prot_H-fluviatilis_contig102.461.1|Name=mRNA_H-fluviatilis_contig102.461.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=268bp
MKMFSRAEIKVKADQREAVLQSKLSKLEESRRLRMERFKKSNRIAPENVS
ESMRETVFGDYLESLRPKTTLKRVKKLYCLANLAKSICQLDSSAALRFLQ
NRDIDPSKSSREVADLLYYNADLLSRIAETDFVNISRFLSKSDITNISEI
ETVGRIPKLLLDYKSNNMVRLEYALKERCVDDSKKILHLLCVTESRRTRS
TEPTPTQLQTRSSISSMEARQQVSTGSAQPCDVGDEHGNQKRLGLLQTIY
RGQRGCRSRRDCGDTGS*
back to top

mRNA from alignment at H-fluviatilis_contig102:47301..48342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102.461.1 ID=mRNA_H-fluviatilis_contig102.461.1|Name=mRNA_H-fluviatilis_contig102.461.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-fluviatilis_contig102:47301..48342+ (Heribaudiella fluviatilis SAG_13_90)
TGCGGATTGTGTAAGGCACAGTCTGAACCCACGCGATTCGAGGGGATCCT
ATTGTCAATCTTGTGCTCCGGGTGTGCAAGCAATCACCTCAATGACGACG
GTAAATCTCTCGTGTGCGCTAGTAGAGCCGTGACAGAATTTGGAGCCACA
AAGTCTGATCTGGATCATCTTTATTCCAGATCCGTTCGAAACCCTCACTA
CAGGTCAGCCGCGACGATGAAAATGTTCTCGAGAGCAGAAATCAAGGTAA
AGGCAGACCAGCGAGAAGCAGTTTTGCAATCGAAACTCTCAAAACTGGAA
GAATCCCGGAGGCTCAGGATGGAGAGATTTAAAAAATCTAACAGAATTGC
CCCGGAAAACGTCTCTGAATCGATGAGAGAAACTGTCTTCGGTGATTACC
TCGAGAGTTTAAGACCCAAGACGACCTTGAAGCGAGTCAAAAAGCTGTAT
TGCCTCGCCAATCTGGCAAAATCTATCTGTCAATTGGATTCATCGGCCGC
CTTGCGATTCTTACAGAATAGAGACATTGATCCAAGTAAGTCTTCACGGG
AAGTGGCCGATTTGCTTTATTACAACGCTGATCTTCTGTCGCGCATTGCG
GAGACTGATTTCGTTAACATCTCCAGGTTTCTCTCCAAATCGGACATCAC
AAATATATCAGAGATTGAGACTGTAGGAAGAATTCCAAAATTACTGTTGG
ATTACAAGAGCAATAACATGGTTCGTCTGGAGTACGCCTTGAAAGAGAGA
TGTGTCGATGATTCCAAAAAGATCCTGCATCTGCTCTGCGTGACAGAGTC
TCGACGTACAAGAAGTACGGAGCCGACTCCGACCCAACTGCAGACAAGAT
CAAGTATTTCCTCGATGGAAGCTAGACAGCAAGTCTCGACGGGCTCAGCT
CAGCCTTGCGATGTCGGAGATGAACATGGAAATCAGAAGCGACTCGGTTT
ATTGCAGACAATATATCGAGGGCAACGTGGATGTCGATCTAGACGAGATT
GTGGGGATACAGGCTCTTAAGAGACACCTCTTCGACGGTGGA
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig102:47301..48342+

>mRNA_H-fluviatilis_contig102.461.1 ID=mRNA_H-fluviatilis_contig102.461.1|Name=mRNA_H-fluviatilis_contig102.461.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1608bp|location=Sequence derived from alignment at H-fluviatilis_contig102:47301..48342+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAAATGTTCTCGAGAGCAGAAATCAAGGTAAAGGCAGACCAGCGAGA
AGCAGTTTTGCAATCGAAACTCTCAAAACTGGAAGAATCCCGGAGGCTCA
GGATGGAGAGATTTAAAAAATCTAACAGAATTGCCCCGGAAAACGTCTCT
GAATCGATGAGAGAAACTGTCTTCGGTGATTACCTCGAGAGTTTAAGACC
CAAGACGACCTTGAAGCGAGTCAAAAAGCTGTATTGCCTCGCCAATCTGG
CAAAATCTATCTGTCAATTGGATTCATCGGCCGCCTTGCGATTCTTACAG
AATAGAGACATTGATCCAAGTAAGTCTTCACGGGAAGTGGCCGATTTGCT
TTATTACAACGCTGATCTTCTGTCGCGCATTGCGGAGACTGATTTCGTTA
ACATCTCCAGGTTTCTCTCCAAATCGGACATCACAAATATATCAGAGATT
GAGACTGTAGGAAGAATTCCAAAATTACTGTTGGATTACAAGAGCAATAA
CATGGTTCGTCTGGAGTACGCCTTGAAAGAGAGATGTGTCGATGATTCCA
AAAAGATCCTGCATCTGCTCTGCGTGACAGAGTCTCGACGTACAAGAAGT
ACGGAGCCGACTCCGACCCAACTGCAGACAAGATCAAGTATTTCCTCGAT
GGAAGCTAGACAGCAAGTCTCGACGGGCTCAGCTCAGCCTTGCGATGTCG
GAGATGAACATGGAAATCAGAAGCGACTCGGTTTATTGCAGACAATATAT
CGAGGGCAACGTGGATGTCGATCTAGACGAGATTGTGGGGATACAGGCTC
TTAAATGAAAATGTTCTCGAGAGCAGAAATCAAGGTAAAGGCAGACCAGC
GAGAAGCAGTTTTGCAATCGAAACTCTCAAAACTGGAAGAATCCCGGAGG
CTCAGGATGGAGAGATTTAAAAAATCTAACAGAATTGCCCCGGAAAACGT
CTCTGAATCGATGAGAGAAACTGTCTTCGGTGATTACCTCGAGAGTTTAA
GACCCAAGACGACCTTGAAGCGAGTCAAAAAGCTGTATTGCCTCGCCAAT
CTGGCAAAATCTATCTGTCAATTGGATTCATCGGCCGCCTTGCGATTCTT
ACAGAATAGAGACATTGATCCAAGTAAGTCTTCACGGGAAGTGGCCGATT
TGCTTTATTACAACGCTGATCTTCTGTCGCGCATTGCGGAGACTGATTTC
GTTAACATCTCCAGGTTTCTCTCCAAATCGGACATCACAAATATATCAGA
GATTGAGACTGTAGGAAGAATTCCAAAATTACTGTTGGATTACAAGAGCA
ATAACATGGTTCGTCTGGAGTACGCCTTGAAAGAGAGATGTGTCGATGAT
TCCAAAAAGATCCTGCATCTGCTCTGCGTGACAGAGTCTCGACGTACAAG
AAGTACGGAGCCGACTCCGACCCAACTGCAGACAAGATCAAGTATTTCCT
CGATGGAAGCTAGACAGCAAGTCTCGACGGGCTCAGCTCAGCCTTGCGAT
GTCGGAGATGAACATGGAAATCAGAAGCGACTCGGTTTATTGCAGACAAT
ATATCGAGGGCAACGTGGATGTCGATCTAGACGAGATTGTGGGGATACAG
GCTCTTAA
back to top